Wall clock time and date at job start Tue Mar 31 2020 23:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31791 * 119.08200 * 2 1 4 4 C 1.32556 * 121.00613 * 180.02562 * 3 2 1 5 5 C 1.38108 * 119.20335 * 359.97438 * 4 3 2 6 6 C 1.39626 * 118.33308 * 359.97438 * 5 4 3 7 7 N 1.38537 * 120.53103 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00251 * 0.02562 * 7 6 5 9 9 C 1.50695 * 109.47262 * 179.97438 * 8 7 6 10 10 C 1.38382 * 119.92673 * 269.97249 * 9 8 7 11 11 C 1.38339 * 120.29486 * 180.02562 * 10 9 8 12 12 C 1.37981 * 120.14356 * 359.73941 * 11 10 9 13 13 C 1.39556 * 119.85074 * 0.53781 * 12 11 10 14 14 C 1.47846 * 120.14398 * 179.74157 * 13 12 11 15 15 O 1.21554 * 120.00284 * 179.72298 * 14 13 12 16 16 N 1.34781 * 119.99994 * 359.72118 * 14 13 12 17 17 C 1.46499 * 119.99874 * 179.97438 * 16 14 13 18 18 H 1.09002 * 109.47391 * 325.00213 * 17 16 14 19 19 C 1.53000 * 109.46840 * 85.00543 * 17 16 14 20 20 C 1.50699 * 109.47060 * 205.00285 * 17 16 14 21 21 H 1.07999 * 120.00019 * 0.02562 * 20 17 16 22 22 C 1.37877 * 120.00129 * 180.02562 * 20 17 16 23 23 N 1.31519 * 119.99723 * 359.97438 * 22 20 17 24 24 Si 1.86803 * 119.99900 * 179.97438 * 22 20 17 25 25 H 1.48501 * 109.47147 * 90.00197 * 24 22 20 26 26 H 1.48499 * 109.46797 * 209.99607 * 24 22 20 27 27 H 1.48500 * 109.47032 * 329.99738 * 24 22 20 28 28 C 1.37940 * 119.93202 * 89.99843 * 9 8 7 29 29 N 1.31749 * 119.08535 * 180.25617 * 2 1 3 30 30 H 1.09000 * 109.47110 * 90.00108 * 1 2 3 31 31 H 1.08998 * 109.47163 * 209.99777 * 1 2 3 32 32 H 1.09003 * 109.47328 * 329.99977 * 1 2 3 33 33 H 1.08006 * 120.39218 * 180.02562 * 4 3 2 34 34 H 1.08001 * 120.83381 * 179.97438 * 5 4 3 35 35 H 0.97001 * 119.99902 * 180.02562 * 7 6 5 36 36 H 1.08996 * 109.47286 * 59.99311 * 8 7 6 37 37 H 1.09006 * 109.46971 * 299.99328 * 8 7 6 38 38 H 1.07998 * 119.85551 * 0.02849 * 10 9 8 39 39 H 1.08000 * 119.92829 * 180.02562 * 11 10 9 40 40 H 1.08002 * 120.07289 * 180.25312 * 12 11 10 41 41 H 0.97002 * 119.99716 * 0.02562 * 16 14 13 42 42 H 1.09001 * 109.47194 * 299.99493 * 19 17 16 43 43 H 1.08992 * 109.47399 * 59.99666 * 19 17 16 44 44 H 1.09004 * 109.46724 * 180.02562 * 19 17 16 45 45 H 0.97003 * 119.99231 * 179.97438 * 23 22 20 46 46 H 1.08002 * 120.07116 * 0.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1475 1.1518 0.0000 4 6 3.4723 1.1963 -0.0005 5 6 4.1863 0.0140 -0.0005 6 6 3.4768 -1.1885 0.0006 7 7 4.1469 -2.4010 0.0001 8 6 5.6117 -2.4285 -0.0010 9 6 6.0873 -3.8584 -0.0007 10 6 6.3067 -4.5127 1.1987 11 6 6.7439 -5.8252 1.2079 12 6 6.9589 -6.4922 0.0193 13 6 6.7452 -5.8363 -1.1938 14 6 6.9791 -6.5430 -2.4712 15 8 6.7873 -5.9708 -3.5264 16 7 7.4050 -7.8217 -2.4657 17 6 7.6362 -8.5222 -3.7315 18 1 6.9039 -8.1923 -4.4684 19 6 9.0457 -8.2089 -4.2376 20 6 7.4983 -10.0073 -3.5163 21 1 7.2616 -10.3910 -2.5349 22 6 7.6742 -10.8762 -4.5722 23 7 7.9619 -10.4089 -5.7674 24 14 7.5039 -12.7172 -4.3052 25 1 6.0930 -13.1217 -4.5306 26 1 8.3841 -13.4391 -5.2587 27 1 7.8994 -13.0543 -2.9140 28 6 6.3036 -4.5121 -1.1960 29 7 2.1474 -1.1513 -0.0051 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 3.9872 2.1457 -0.0001 34 1 5.2663 0.0196 -0.0013 35 1 3.6463 -3.2319 0.0005 36 1 5.9853 -1.9214 0.8886 37 1 5.9839 -1.9216 -0.8914 38 1 6.1358 -3.9966 2.1319 39 1 6.9128 -6.3303 2.1474 40 1 7.2963 -7.5182 0.0278 41 1 7.5577 -8.2784 -1.6237 42 1 9.1455 -7.1347 -4.3933 43 1 9.7780 -8.5387 -3.5008 44 1 9.2175 -8.7297 -5.1796 45 1 8.0860 -11.0203 -6.5102 46 1 6.1329 -4.0000 -2.1314 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348733764.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:38 Heat of formation + Delta-G solvation = 13.796028 kcal Electronic energy + Delta-G solvation = -27406.256536 eV Core-core repulsion = 23487.661095 eV Total energy + Delta-G solvation = -3918.595442 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.87847 -41.22493 -39.67394 -37.49981 -36.78788 -34.59383 -34.33364 -33.68469 -32.31948 -31.64550 -30.51897 -29.22848 -27.38687 -27.09521 -25.23041 -24.67854 -23.30251 -22.74320 -22.39993 -21.07730 -19.60866 -18.84975 -18.18740 -17.87181 -17.39195 -16.95452 -16.55658 -16.27225 -16.21873 -16.04500 -15.92724 -15.70027 -15.43426 -14.99211 -14.74999 -14.50739 -14.41621 -14.07269 -13.89756 -13.79573 -13.43343 -13.37784 -13.17108 -13.00237 -12.90354 -12.78499 -12.65988 -12.30549 -12.18511 -12.14432 -12.04031 -11.63562 -11.16166 -10.90542 -10.69444 -10.62651 -10.19891 -10.08652 -9.96788 -9.74422 -9.14601 -8.20356 -6.38458 -0.16738 0.11801 0.21795 0.43478 1.43891 1.44600 1.55397 1.79654 2.14452 2.30676 2.53340 2.89381 2.92355 3.10270 3.24527 3.44512 3.56532 3.75258 3.84824 3.88354 4.10157 4.23095 4.27300 4.36166 4.46670 4.53578 4.58631 4.62184 4.70528 4.74894 4.81878 4.87449 4.89788 4.96250 5.04135 5.07034 5.31012 5.35450 5.37145 5.39121 5.43987 5.54899 5.63254 5.78990 5.83433 5.88985 6.04948 6.23992 6.53398 6.68106 6.86590 7.27346 7.34426 7.44679 8.86151 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018332 B = 0.001870 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.988430 B =14966.678099 C =15371.065791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.340 3.660 3 N -0.585 5.585 4 C 0.171 3.829 5 C -0.300 4.300 6 C 0.424 3.576 7 N -0.705 5.705 8 C 0.173 3.827 9 C -0.117 4.117 10 C -0.063 4.063 11 C -0.119 4.119 12 C -0.077 4.077 13 C -0.149 4.149 14 C 0.535 3.465 15 O -0.602 6.602 16 N -0.697 5.697 17 C 0.269 3.731 18 H -0.003 1.003 19 C -0.133 4.133 20 C -0.547 4.547 21 H 0.075 0.925 22 C 0.013 3.987 23 N -0.917 5.917 24 Si 0.975 3.025 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.257 1.257 28 C -0.055 4.055 29 N -0.606 5.606 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.196 0.804 34 H 0.167 0.833 35 H 0.406 0.594 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.163 0.837 39 H 0.166 0.834 40 H 0.139 0.861 41 H 0.405 0.595 42 H 0.010 0.990 43 H 0.043 0.957 44 H 0.068 0.932 45 H 0.266 0.734 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.580 18.680 20.729 28.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.072 3.928 3 N -0.305 5.305 4 C 0.010 3.990 5 C -0.328 4.328 6 C 0.180 3.820 7 N -0.336 5.336 8 C 0.051 3.949 9 C -0.117 4.117 10 C -0.082 4.082 11 C -0.137 4.137 12 C -0.096 4.096 13 C -0.152 4.152 14 C 0.324 3.676 15 O -0.485 6.485 16 N -0.345 5.345 17 C 0.166 3.834 18 H 0.015 0.985 19 C -0.192 4.192 20 C -0.585 4.585 21 H 0.093 0.907 22 C -0.188 4.188 23 N -0.555 5.555 24 Si 0.800 3.200 25 H -0.205 1.205 26 H -0.209 1.209 27 H -0.181 1.181 28 C -0.075 4.075 29 N -0.332 5.332 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.213 0.787 34 H 0.185 0.815 35 H 0.242 0.758 36 H 0.125 0.875 37 H 0.096 0.904 38 H 0.181 0.819 39 H 0.183 0.817 40 H 0.157 0.843 41 H 0.241 0.759 42 H 0.029 0.971 43 H 0.062 0.938 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.372 18.992 19.780 28.152 hybrid contribution 0.851 -1.688 -0.667 2.005 sum -5.521 17.304 19.112 26.367 Atomic orbital electron populations 1.20630 0.84349 1.04670 1.04426 1.23473 0.98936 0.82580 0.87849 1.68336 1.11168 1.29753 1.21289 1.23472 0.89083 0.99402 0.87084 1.22417 1.03519 0.92201 1.14660 1.18846 0.88376 0.87668 0.87124 1.44695 1.06128 1.04779 1.78045 1.20403 0.77793 0.92542 1.04202 1.19708 1.03198 0.96224 0.92603 1.21645 0.94145 0.94402 0.97991 1.21489 0.98947 0.94933 0.98304 1.21662 0.96078 1.00445 0.91448 1.19958 1.06734 0.96010 0.92537 1.19028 0.76789 0.82277 0.89524 1.90693 1.55145 1.67829 1.34837 1.46216 1.65280 1.11958 1.11063 1.18405 0.92852 0.91005 0.81186 0.98506 1.21895 0.98178 0.96808 1.02318 1.21512 1.49761 0.90518 0.96728 0.90666 1.25848 0.94101 1.04257 0.94548 1.70061 1.47670 1.36689 1.01112 0.85295 0.77844 0.78256 0.78639 1.20452 1.20920 1.18128 1.21141 0.94823 0.92766 0.98786 1.67784 1.08604 1.32134 1.24672 0.89055 0.89419 0.88525 0.78701 0.81536 0.75823 0.87461 0.90359 0.81941 0.81662 0.84290 0.75895 0.97066 0.93827 0.91297 0.92492 0.86788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 10.32 71.23 0.73 -0.49 16 2 C 0.34 7.38 7.64 138.76 1.06 8.44 16 3 N -0.58 -12.25 10.33 -188.11 -1.94 -14.19 16 4 C 0.17 2.72 11.29 84.55 0.95 3.68 16 5 C -0.30 -4.70 9.40 22.57 0.21 -4.49 16 6 C 0.42 8.59 7.71 133.16 1.03 9.62 16 7 N -0.71 -12.16 5.70 -348.33 -1.99 -14.14 16 8 C 0.17 2.27 5.05 85.63 0.43 2.70 16 9 C -0.12 -2.00 5.24 -19.90 -0.10 -2.11 16 10 C -0.06 -0.82 9.69 22.33 0.22 -0.60 16 11 C -0.12 -1.73 10.03 22.23 0.22 -1.51 16 12 C -0.08 -1.70 9.54 22.53 0.21 -1.49 16 13 C -0.15 -4.53 5.87 -20.09 -0.12 -4.65 16 14 C 0.54 22.57 7.74 86.79 0.67 23.24 16 15 O -0.60 -31.01 16.01 -3.89 -0.06 -31.07 16 16 N -0.70 -29.63 5.02 -448.97 -2.25 -31.89 16 17 C 0.27 14.19 2.56 44.25 0.11 14.30 16 18 H 0.00 -0.19 7.58 -2.39 -0.02 -0.20 16 19 C -0.13 -6.85 9.26 71.98 0.67 -6.18 16 20 C -0.55 -28.94 8.73 25.60 0.22 -28.72 16 21 H 0.08 3.67 7.74 -2.91 -0.02 3.65 16 22 C 0.01 0.68 5.30 84.65 0.45 1.13 16 23 N -0.92 -52.78 11.32 21.45 0.24 -52.53 16 24 Si 0.98 41.72 29.54 68.60 2.03 43.75 16 25 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 26 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 28 C -0.06 -1.46 9.24 22.53 0.21 -1.26 16 29 N -0.61 -14.33 10.37 -185.45 -1.92 -16.25 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.20 1.61 8.06 -2.91 -0.02 1.59 16 34 H 0.17 1.60 6.87 -2.91 -0.02 1.58 16 35 H 0.41 7.64 8.59 -92.71 -0.80 6.84 16 36 H 0.11 0.81 7.92 -2.39 -0.02 0.79 16 37 H 0.08 1.05 7.92 -2.38 -0.02 1.03 16 38 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 39 H 0.17 1.31 8.06 -2.91 -0.02 1.28 16 40 H 0.14 2.75 6.41 -2.91 -0.02 2.73 16 41 H 0.40 14.18 6.57 -92.71 -0.61 13.57 16 42 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 45 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 46 H 0.11 3.46 7.65 -2.91 -0.02 3.43 16 Total: -1.00 -76.77 390.72 0.91 -75.86 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: -0.38 Total: 28.88 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 7.18 Total: 11.60 kcal Atomic # 7 Polarization: -121.15 SS G_CDS: -7.86 Total: -129.01 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.06 Total: -31.07 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -76.77 0.91 -75.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348733764.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.652 kcal (2) G-P(sol) polarization free energy of solvation -76.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds