Wall clock time and date at job start Tue Mar 31 2020 22:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38138 * 120.03332 * 2 1 4 4 C 1.38257 * 120.06526 * 180.02562 * 3 2 1 5 5 C 1.38294 * 120.13395 * 359.97248 * 4 3 2 6 6 C 1.38100 * 120.06748 * 359.77207 * 5 4 3 7 7 C 1.38811 * 120.03091 * 180.02562 * 2 1 3 8 8 N 1.40215 * 120.06804 * 359.97438 * 7 2 1 9 9 C 1.35109 * 126.60811 * 132.38056 * 8 7 2 10 10 C 1.36687 * 106.77655 * 180.13930 * 9 8 7 11 11 C 1.47430 * 125.77179 * 179.87831 * 10 9 8 12 12 O 1.21624 * 119.99926 * 353.44647 * 11 10 9 13 13 N 1.34776 * 119.99984 * 173.43970 * 11 10 9 14 14 C 1.36954 * 120.00032 * 3.59494 * 13 11 10 15 15 H 1.08000 * 120.00146 * 117.83654 * 14 13 11 16 16 C 1.38990 * 119.99621 * 297.83501 * 14 13 11 17 17 N 1.31411 * 119.99622 * 172.39336 * 16 14 13 18 18 Si 1.86797 * 120.00191 * 352.38920 * 16 14 13 19 19 H 1.48505 * 109.46848 * 95.02077 * 18 16 14 20 20 H 1.48502 * 109.47249 * 215.01913 * 18 16 14 21 21 H 1.48496 * 109.47320 * 335.01983 * 18 16 14 22 22 C 1.46505 * 119.99997 * 183.58615 * 13 11 10 23 23 C 1.55238 * 110.58112 * 231.71730 * 22 13 11 24 24 C 1.54886 * 102.58328 * 203.34200 * 23 22 13 25 25 C 1.54273 * 104.31733 * 37.93117 * 24 23 22 26 26 C 1.53872 * 106.59286 * 336.32189 * 25 24 23 27 27 N 1.34436 * 108.45467 * 359.61774 * 10 9 8 28 28 N 1.28743 * 109.58307 * 0.23810 * 27 10 9 29 29 H 1.09002 * 109.47153 * 272.55323 * 1 2 3 30 30 H 1.09001 * 109.47253 * 32.55501 * 1 2 3 31 31 H 1.08999 * 109.47232 * 152.55422 * 1 2 3 32 32 H 1.08005 * 119.96672 * 0.04388 * 3 2 1 33 33 H 1.08006 * 119.93382 * 180.02562 * 4 3 2 34 34 H 1.08004 * 119.97070 * 180.02562 * 5 4 3 35 35 H 1.07994 * 120.03563 * 180.24946 * 6 5 4 36 36 H 1.07995 * 126.60951 * 0.03737 * 9 8 7 37 37 H 0.97002 * 119.99684 * 180.02562 * 17 16 14 38 38 H 1.08996 * 110.43389 * 354.30208 * 22 13 11 39 39 H 1.08992 * 110.90077 * 85.05008 * 23 22 13 40 40 H 1.09001 * 110.76245 * 321.56624 * 23 22 13 41 41 H 1.08999 * 110.48486 * 279.18240 * 24 23 22 42 42 H 1.09005 * 110.48438 * 156.67594 * 24 23 22 43 43 H 1.08992 * 110.02958 * 95.60874 * 25 24 23 44 44 H 1.09004 * 110.03058 * 216.99184 * 25 24 23 45 45 H 1.09004 * 110.03128 * 119.28760 * 26 25 24 46 46 H 1.09000 * 110.03042 * 240.66403 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1959 0.0000 4 6 3.5809 1.1967 -0.0005 5 6 4.2758 0.0010 -0.0005 6 6 3.5902 -1.1978 0.0048 7 6 2.2017 -1.2018 -0.0005 8 7 1.5027 -2.4173 -0.0005 9 6 1.7345 -3.4800 -0.8020 10 6 0.8206 -4.4377 -0.4615 11 6 0.6982 -5.7706 -1.0795 12 8 1.3706 -6.0538 -2.0526 13 7 -0.1585 -6.6754 -0.5659 14 6 -0.9686 -6.3325 0.4838 15 1 -2.0420 -6.3489 0.3654 16 6 -0.4093 -5.9635 1.7015 17 7 -1.1746 -5.4921 2.6601 18 14 1.4303 -6.1378 1.9755 19 1 2.0993 -4.8453 1.6801 20 1 1.6867 -6.5163 3.3884 21 1 1.9672 -7.1901 1.0758 22 6 -0.2235 -8.0257 -1.1307 23 6 -1.6891 -8.4024 -1.4771 24 6 -1.6530 -9.9507 -1.4578 25 6 -0.7104 -10.2958 -0.2864 26 6 0.1985 -9.0718 -0.0785 27 7 0.0560 -3.9608 0.5361 28 7 0.4321 -2.7663 0.8348 29 1 -0.3633 0.0458 1.0267 30 1 -0.3634 0.8662 -0.5530 31 1 -0.3634 -0.9120 -0.4737 32 1 1.6583 2.1313 0.0007 33 1 4.1193 2.1330 -0.0001 34 1 5.3559 0.0047 -0.0005 35 1 4.1334 -2.1311 0.0089 36 1 2.4942 -3.5571 -1.5657 37 1 -0.7842 -5.2342 3.5098 38 1 0.4083 -8.0987 -2.0159 39 1 -1.9617 -8.0346 -2.4662 40 1 -2.3750 -8.0226 -0.7199 41 1 -1.2522 -10.3347 -2.3959 42 1 -2.6497 -10.3533 -1.2768 43 1 -1.2909 -10.4875 0.6160 44 1 -0.1092 -11.1702 -0.5360 45 1 0.0592 -8.6694 0.9250 46 1 1.2415 -9.3518 -0.2266 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413485315.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:17 Heat of formation + Delta-G solvation = 116.549882 kcal Electronic energy + Delta-G solvation = -30238.087224 eV Core-core repulsion = 26323.947524 eV Total energy + Delta-G solvation = -3914.139700 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.78406 -39.54275 -38.86413 -36.75061 -34.53322 -33.82343 -32.88448 -31.62804 -30.35185 -29.71411 -28.05680 -27.25850 -26.94339 -24.61921 -23.91365 -22.72904 -21.90180 -20.98247 -20.04100 -19.84062 -19.06631 -18.23165 -16.73141 -16.22803 -15.96273 -15.80135 -15.39873 -14.78916 -14.73484 -14.63331 -13.93405 -13.91928 -13.77005 -13.62420 -13.52674 -13.37621 -12.83971 -12.54895 -12.45468 -12.26065 -11.93390 -11.71822 -11.52465 -11.47349 -11.24436 -11.09094 -10.93787 -10.72967 -10.62143 -10.56048 -10.42161 -10.05481 -9.87273 -9.79496 -9.63726 -9.11224 -9.07091 -8.83893 -8.41682 -8.33755 -7.37098 -6.20186 -4.07666 0.77187 1.09420 1.87622 2.51863 2.61393 3.19259 3.29716 3.39080 3.44833 4.24503 4.26619 4.35328 4.57971 4.61039 4.77381 4.88410 5.05360 5.13695 5.16610 5.28047 5.33858 5.41501 5.45430 5.50367 5.54548 5.64028 5.69392 5.77370 5.83728 6.06236 6.08282 6.14535 6.18182 6.19657 6.21005 6.21444 6.30798 6.35310 6.46112 6.47680 6.52600 6.61021 6.66337 6.90197 6.98944 7.12829 7.15997 7.87022 7.94698 8.61048 8.77012 9.12224 9.39805 9.75062 10.88546 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019996 B = 0.003530 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.919445 B = 7930.056197 C = 8145.807121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.062 4.062 3 C -0.109 4.109 4 C -0.112 4.112 5 C -0.112 4.112 6 C -0.113 4.113 7 C 0.138 3.862 8 N -0.336 5.336 9 C 0.067 3.933 10 C -0.073 4.073 11 C 0.564 3.436 12 O -0.594 6.594 13 N -0.442 5.442 14 C -0.348 4.348 15 H 0.100 0.900 16 C 0.127 3.873 17 N -0.847 5.847 18 Si 0.854 3.146 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.260 1.260 22 C 0.132 3.868 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.117 4.117 26 C -0.132 4.132 27 N -0.112 5.112 28 N -0.078 5.078 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.194 0.806 37 H 0.270 0.730 38 H 0.085 0.915 39 H 0.057 0.943 40 H 0.086 0.914 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.081 0.919 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.822 8.041 -5.062 11.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.064 4.064 3 C -0.128 4.128 4 C -0.130 4.130 5 C -0.131 4.131 6 C -0.133 4.133 7 C 0.047 3.953 8 N -0.116 5.116 9 C -0.086 4.086 10 C -0.210 4.210 11 C 0.352 3.648 12 O -0.478 6.478 13 N -0.161 5.161 14 C -0.475 4.475 15 H 0.117 0.883 16 C -0.084 4.084 17 N -0.481 5.481 18 Si 0.681 3.319 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.184 1.184 22 C 0.029 3.971 23 C -0.163 4.163 24 C -0.159 4.159 25 C -0.155 4.155 26 C -0.170 4.170 27 N 0.014 4.986 28 N -0.057 5.057 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.211 0.789 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.105 0.895 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.099 0.901 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.157 8.358 -4.219 11.205 hybrid contribution 1.878 -0.215 -0.222 1.904 sum 8.035 8.143 -4.441 12.271 Atomic orbital electron populations 1.20819 0.89744 1.03024 1.03541 1.19910 0.97209 0.91155 0.98102 1.20966 0.94179 0.97000 1.00616 1.21243 0.94211 0.98274 0.99319 1.20978 1.00140 0.91461 1.00476 1.21158 0.91794 0.99705 1.00663 1.17405 0.90270 0.82785 1.04843 1.47680 1.26656 1.10488 1.26780 1.23229 1.01180 0.87111 0.97050 1.21500 0.99359 0.98803 1.01297 1.17382 0.82564 0.82317 0.82566 1.90631 1.49642 1.79677 1.27894 1.43428 1.34740 1.07517 1.30417 1.18654 0.91121 1.49294 0.88473 0.88266 1.25260 0.96137 0.92130 0.94887 1.69562 1.35526 1.38234 1.04779 0.87327 0.87731 0.78857 0.77978 1.21008 1.21577 1.18411 1.22009 0.96185 0.83119 0.95831 1.22776 0.97830 0.94277 1.01407 1.22271 0.99003 0.96581 0.98006 1.22031 0.97577 0.97381 0.98472 1.22438 0.97900 0.94903 1.01776 1.75652 1.16579 0.99418 1.06961 1.82295 0.99651 1.10060 1.13685 0.89861 0.91378 0.91062 0.84983 0.85357 0.85061 0.85156 0.78937 0.91912 0.89710 0.92452 0.89526 0.92363 0.92163 0.91969 0.92801 0.90059 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 9.12 36.00 0.33 -1.22 16 2 C -0.06 -0.83 5.89 -104.45 -0.62 -1.45 16 3 C -0.11 -1.12 9.71 -39.61 -0.38 -1.51 16 4 C -0.11 -1.02 10.04 -39.55 -0.40 -1.41 16 5 C -0.11 -1.11 10.04 -39.61 -0.40 -1.51 16 6 C -0.11 -1.45 9.66 -39.40 -0.38 -1.83 16 7 C 0.14 2.15 6.26 -83.58 -0.52 1.62 16 8 N -0.34 -6.45 3.08 -10.40 -0.03 -6.49 16 9 C 0.07 1.33 10.95 -16.67 -0.18 1.15 16 10 C -0.07 -1.74 4.26 -83.54 -0.36 -2.09 16 11 C 0.56 14.06 6.22 -12.52 -0.08 13.98 16 12 O -0.59 -15.05 16.24 5.26 0.09 -14.97 16 13 N -0.44 -10.82 1.84 -106.97 -0.20 -11.02 16 14 C -0.35 -9.13 6.82 -14.99 -0.10 -9.24 16 15 H 0.10 2.79 7.16 -52.49 -0.38 2.42 16 16 C 0.13 3.43 3.14 -17.45 -0.05 3.38 16 17 N -0.85 -23.97 13.93 55.50 0.77 -23.20 16 18 Si 0.85 21.92 23.14 -169.99 -3.93 17.98 16 19 H -0.28 -7.40 6.35 56.52 0.36 -7.04 16 20 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 21 H -0.26 -6.64 6.79 56.52 0.38 -6.26 16 22 C 0.13 2.80 3.25 -66.08 -0.21 2.59 16 23 C -0.12 -2.30 6.41 -24.55 -0.16 -2.46 16 24 C -0.12 -1.83 6.82 -25.07 -0.17 -2.00 16 25 C -0.12 -1.86 6.80 -25.61 -0.17 -2.04 16 26 C -0.13 -2.61 6.10 -25.62 -0.16 -2.76 16 27 N -0.11 -2.81 6.70 32.85 0.22 -2.59 16 28 N -0.08 -1.78 12.01 60.35 0.73 -1.06 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 31 H 0.07 1.17 6.70 -51.93 -0.35 0.82 16 32 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 33 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 34 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 35 H 0.13 1.61 8.05 -52.49 -0.42 1.18 16 36 H 0.19 3.15 8.06 -52.49 -0.42 2.73 16 37 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.08 1.83 6.99 -51.93 -0.36 1.46 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.09 1.74 6.54 -51.93 -0.34 1.41 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.08 1.81 6.07 -51.93 -0.32 1.50 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 365.82 15.07 5.51 5.51 Total: -1.00 -31.78 365.82 -7.29 -39.07 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.43 Total: 3.55 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -4.02 Total: -6.80 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 1.49 Total: -44.35 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: 0.09 Total: -14.97 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -3.93 Total: 17.98 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.78 -7.29 -39.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413485315.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.621 kcal (2) G-P(sol) polarization free energy of solvation -31.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds