Wall clock time and date at job start Tue Mar 31 2020 22:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38138 * 120.03332 * 2 1 4 4 C 1.38257 * 120.06526 * 180.02562 * 3 2 1 5 5 C 1.38294 * 120.13395 * 359.97248 * 4 3 2 6 6 C 1.38100 * 120.06748 * 359.77207 * 5 4 3 7 7 C 1.38811 * 120.03091 * 180.02562 * 2 1 3 8 8 N 1.40215 * 120.06804 * 359.97438 * 7 2 1 9 9 C 1.35109 * 126.60811 * 132.38056 * 8 7 2 10 10 C 1.36687 * 106.77655 * 180.13930 * 9 8 7 11 11 C 1.47430 * 125.77179 * 179.87831 * 10 9 8 12 12 O 1.21624 * 119.99926 * 353.44647 * 11 10 9 13 13 N 1.34776 * 119.99984 * 173.43970 * 11 10 9 14 14 C 1.36954 * 120.00032 * 3.59494 * 13 11 10 15 15 H 1.08000 * 120.00146 * 117.83654 * 14 13 11 16 16 C 1.38990 * 119.99621 * 297.83501 * 14 13 11 17 17 N 1.31411 * 119.99622 * 172.39336 * 16 14 13 18 18 Si 1.86797 * 120.00191 * 352.38920 * 16 14 13 19 19 H 1.48505 * 109.46848 * 95.02077 * 18 16 14 20 20 H 1.48502 * 109.47249 * 215.01913 * 18 16 14 21 21 H 1.48496 * 109.47320 * 335.01983 * 18 16 14 22 22 C 1.46505 * 119.99997 * 183.58615 * 13 11 10 23 23 C 1.55238 * 110.58112 * 231.71730 * 22 13 11 24 24 C 1.54886 * 102.58328 * 203.34200 * 23 22 13 25 25 C 1.54273 * 104.31733 * 37.93117 * 24 23 22 26 26 C 1.53872 * 106.59286 * 336.32189 * 25 24 23 27 27 N 1.34436 * 108.45467 * 359.61774 * 10 9 8 28 28 N 1.28743 * 109.58307 * 0.23810 * 27 10 9 29 29 H 1.09002 * 109.47153 * 272.55323 * 1 2 3 30 30 H 1.09001 * 109.47253 * 32.55501 * 1 2 3 31 31 H 1.08999 * 109.47232 * 152.55422 * 1 2 3 32 32 H 1.08005 * 119.96672 * 0.04388 * 3 2 1 33 33 H 1.08006 * 119.93382 * 180.02562 * 4 3 2 34 34 H 1.08004 * 119.97070 * 180.02562 * 5 4 3 35 35 H 1.07994 * 120.03563 * 180.24946 * 6 5 4 36 36 H 1.07995 * 126.60951 * 0.03737 * 9 8 7 37 37 H 0.97002 * 119.99684 * 180.02562 * 17 16 14 38 38 H 1.08996 * 110.43389 * 354.30208 * 22 13 11 39 39 H 1.08992 * 110.90077 * 85.05008 * 23 22 13 40 40 H 1.09001 * 110.76245 * 321.56624 * 23 22 13 41 41 H 1.08999 * 110.48486 * 279.18240 * 24 23 22 42 42 H 1.09005 * 110.48438 * 156.67594 * 24 23 22 43 43 H 1.08992 * 110.02958 * 95.60874 * 25 24 23 44 44 H 1.09004 * 110.03058 * 216.99184 * 25 24 23 45 45 H 1.09004 * 110.03128 * 119.28760 * 26 25 24 46 46 H 1.09000 * 110.03042 * 240.66403 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1959 0.0000 4 6 3.5809 1.1967 -0.0005 5 6 4.2758 0.0010 -0.0005 6 6 3.5902 -1.1978 0.0048 7 6 2.2017 -1.2018 -0.0005 8 7 1.5027 -2.4173 -0.0005 9 6 1.7345 -3.4800 -0.8020 10 6 0.8206 -4.4377 -0.4615 11 6 0.6982 -5.7706 -1.0795 12 8 1.3706 -6.0538 -2.0526 13 7 -0.1585 -6.6754 -0.5659 14 6 -0.9686 -6.3325 0.4838 15 1 -2.0420 -6.3489 0.3654 16 6 -0.4093 -5.9635 1.7015 17 7 -1.1746 -5.4921 2.6601 18 14 1.4303 -6.1378 1.9755 19 1 2.0993 -4.8453 1.6801 20 1 1.6867 -6.5163 3.3884 21 1 1.9672 -7.1901 1.0758 22 6 -0.2235 -8.0257 -1.1307 23 6 -1.6891 -8.4024 -1.4771 24 6 -1.6530 -9.9507 -1.4578 25 6 -0.7104 -10.2958 -0.2864 26 6 0.1985 -9.0718 -0.0785 27 7 0.0560 -3.9608 0.5361 28 7 0.4321 -2.7663 0.8348 29 1 -0.3633 0.0458 1.0267 30 1 -0.3634 0.8662 -0.5530 31 1 -0.3634 -0.9120 -0.4737 32 1 1.6583 2.1313 0.0007 33 1 4.1193 2.1330 -0.0001 34 1 5.3559 0.0047 -0.0005 35 1 4.1334 -2.1311 0.0089 36 1 2.4942 -3.5571 -1.5657 37 1 -0.7842 -5.2342 3.5098 38 1 0.4083 -8.0987 -2.0159 39 1 -1.9617 -8.0346 -2.4662 40 1 -2.3750 -8.0226 -0.7199 41 1 -1.2522 -10.3347 -2.3959 42 1 -2.6497 -10.3533 -1.2768 43 1 -1.2909 -10.4875 0.6160 44 1 -0.1092 -11.1702 -0.5360 45 1 0.0592 -8.6694 0.9250 46 1 1.2415 -9.3518 -0.2266 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413485315.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:16 Heat of formation + Delta-G solvation = 97.975640 kcal Electronic energy + Delta-G solvation = -30238.892664 eV Core-core repulsion = 26323.947524 eV Total energy + Delta-G solvation = -3914.945140 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.38875 -40.93020 -40.28707 -38.40140 -36.23187 -35.31256 -33.89251 -33.65999 -31.92781 -30.92920 -29.52211 -28.74585 -28.03899 -26.63973 -25.21008 -24.36169 -23.01296 -22.28194 -21.58729 -21.38141 -20.77762 -19.66711 -18.44606 -17.69117 -17.58773 -17.14910 -16.74069 -16.28009 -16.22709 -15.95651 -15.74496 -15.54369 -15.26725 -15.05795 -14.88169 -14.62385 -14.24303 -14.14013 -13.70983 -13.57328 -13.42938 -13.15520 -13.08622 -12.91551 -12.83900 -12.51571 -12.45821 -12.26292 -12.14846 -12.00533 -11.89016 -11.81764 -11.52147 -11.37787 -11.20233 -11.00832 -10.43278 -10.39163 -9.92528 -9.64969 -9.30403 -8.32895 -6.19153 -0.37529 0.22253 0.47581 0.76497 1.12605 1.13554 1.18754 1.29762 2.18801 2.39513 2.48828 2.61861 3.09458 3.41116 3.61027 3.66133 3.77925 3.87671 3.88957 3.95952 4.03160 4.11831 4.16758 4.26881 4.39609 4.47037 4.56501 4.59601 4.62572 4.66448 4.69603 4.75598 4.81596 4.86666 4.93300 5.03174 5.13415 5.17349 5.25099 5.26570 5.35640 5.39013 5.41118 5.47339 5.59154 5.59823 5.85328 5.94586 5.97805 6.46082 6.99087 7.17289 7.37706 7.75274 8.78579 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019996 B = 0.003530 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.919445 B = 7930.056197 C = 8145.807121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.076 4.076 3 C -0.104 4.104 4 C -0.093 4.093 5 C -0.104 4.104 6 C -0.120 4.120 7 C 0.085 3.915 8 N -0.314 5.314 9 C 0.084 3.916 10 C -0.112 4.112 11 C 0.558 3.442 12 O -0.605 6.605 13 N -0.451 5.451 14 C -0.331 4.331 15 H 0.073 0.927 16 C 0.110 3.890 17 N -0.880 5.880 18 Si 0.896 3.104 19 H -0.292 1.292 20 H -0.291 1.291 21 H -0.261 1.261 22 C 0.120 3.880 23 C -0.122 4.122 24 C -0.109 4.109 25 C -0.111 4.111 26 C -0.132 4.132 27 N -0.151 5.151 28 N -0.101 5.101 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.034 0.966 32 H 0.163 0.837 33 H 0.171 0.829 34 H 0.166 0.834 35 H 0.130 0.870 36 H 0.227 0.773 37 H 0.268 0.732 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.083 0.917 45 H 0.050 0.950 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.230 9.521 -6.298 14.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.078 4.078 3 C -0.122 4.122 4 C -0.111 4.111 5 C -0.122 4.122 6 C -0.141 4.141 7 C -0.004 4.004 8 N -0.093 5.093 9 C -0.071 4.071 10 C -0.250 4.250 11 C 0.346 3.654 12 O -0.490 6.490 13 N -0.170 5.170 14 C -0.459 4.459 15 H 0.090 0.910 16 C -0.098 4.098 17 N -0.516 5.516 18 Si 0.724 3.276 19 H -0.219 1.219 20 H -0.219 1.219 21 H -0.185 1.185 22 C 0.017 3.983 23 C -0.160 4.160 24 C -0.147 4.147 25 C -0.149 4.149 26 C -0.171 4.171 27 N -0.024 5.024 28 N -0.079 5.079 29 H 0.091 0.909 30 H 0.117 0.883 31 H 0.053 0.947 32 H 0.181 0.819 33 H 0.189 0.811 34 H 0.184 0.816 35 H 0.148 0.852 36 H 0.243 0.757 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.101 0.899 45 H 0.069 0.931 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.558 9.849 -5.444 14.138 hybrid contribution 1.261 -0.400 0.052 1.323 sum 9.819 9.449 -5.392 14.655 Atomic orbital electron populations 1.20757 0.90572 1.02494 1.02936 1.20074 0.96944 0.91814 0.98968 1.21354 0.95101 0.96681 0.99102 1.21789 0.93732 0.99680 0.95857 1.21423 1.01836 0.90440 0.98533 1.21334 0.90574 1.01273 1.00898 1.17957 0.91465 0.81769 1.09243 1.47816 1.25199 1.11413 1.24893 1.23666 1.00407 0.86314 0.96743 1.21594 1.01309 0.99410 1.02681 1.17643 0.82298 0.82921 0.82536 1.90591 1.49988 1.80148 1.28259 1.43558 1.34440 1.08868 1.30118 1.18272 0.90051 1.48777 0.88786 0.90974 1.25462 0.97790 0.91812 0.94759 1.69633 1.36478 1.40237 1.05237 0.86680 0.85599 0.78029 0.77321 1.21855 1.21855 1.18537 1.22289 0.98101 0.81828 0.96042 1.22725 0.95281 0.97187 1.00801 1.22255 1.00200 0.93488 0.98746 1.22024 0.97336 0.96434 0.99056 1.22429 0.99161 0.96116 0.99383 1.75590 1.18068 1.00542 1.08196 1.82152 1.01454 1.09552 1.14760 0.90937 0.88341 0.94715 0.81918 0.81109 0.81646 0.85236 0.75712 0.92160 0.89943 0.91824 0.91960 0.90099 0.90082 0.91810 0.89874 0.93146 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.03 9.12 71.23 0.65 -2.38 16 2 C -0.08 -1.96 5.89 -19.75 -0.12 -2.07 16 3 C -0.10 -1.74 9.71 22.25 0.22 -1.53 16 4 C -0.09 -1.19 10.04 22.29 0.22 -0.97 16 5 C -0.10 -1.61 10.04 22.25 0.22 -1.39 16 6 C -0.12 -2.86 9.66 22.39 0.22 -2.64 16 7 C 0.09 2.60 6.26 38.09 0.24 2.83 16 8 N -0.31 -12.34 3.08 -186.82 -0.58 -12.92 16 9 C 0.08 3.38 10.95 83.83 0.92 4.29 16 10 C -0.11 -5.51 4.26 40.80 0.17 -5.34 16 11 C 0.56 28.65 6.22 86.66 0.54 29.19 16 12 O -0.60 -31.06 16.24 -4.11 -0.07 -31.13 16 13 N -0.45 -22.89 1.84 -610.60 -1.12 -24.02 16 14 C -0.33 -18.30 6.82 84.07 0.57 -17.72 16 15 H 0.07 4.35 7.16 -2.91 -0.02 4.33 16 16 C 0.11 6.22 3.14 84.94 0.27 6.49 16 17 N -0.88 -52.29 13.93 21.67 0.30 -51.98 16 18 Si 0.90 47.12 23.14 68.60 1.59 48.71 16 19 H -0.29 -15.60 6.35 99.48 0.63 -14.97 16 20 H -0.29 -15.17 7.11 99.48 0.71 -14.46 16 21 H -0.26 -13.56 6.79 99.48 0.68 -12.89 16 22 C 0.12 5.17 3.25 46.19 0.15 5.32 16 23 C -0.12 -4.50 6.41 32.01 0.21 -4.29 16 24 C -0.11 -3.06 6.82 31.67 0.22 -2.85 16 25 C -0.11 -3.33 6.80 31.32 0.21 -3.12 16 26 C -0.13 -5.24 6.10 31.32 0.19 -5.05 16 27 N -0.15 -7.97 6.70 -49.99 -0.33 -8.30 16 28 N -0.10 -4.80 12.01 37.02 0.44 -4.35 16 29 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.10 1.97 8.10 -2.39 -0.02 1.95 16 31 H 0.03 1.19 6.70 -2.39 -0.02 1.17 16 32 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 33 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 34 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 35 H 0.13 3.01 8.05 -2.91 -0.02 2.98 16 36 H 0.23 7.25 8.06 -2.91 -0.02 7.22 16 37 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 38 H 0.08 3.57 6.99 -2.39 -0.02 3.55 16 39 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.06 2.60 6.54 -2.39 -0.02 2.58 16 41 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 43 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.05 2.30 6.07 -2.39 -0.01 2.29 16 46 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -74.94 365.82 6.22 -68.72 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.89 Total: 16.48 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 5.10 Total: -1.21 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -1.29 Total: -101.57 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.07 Total: -31.13 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.59 Total: 48.71 kcal Total: -74.94 6.22 -68.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413485315.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.696 kcal (2) G-P(sol) polarization free energy of solvation -74.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds