Wall clock time and date at job start Tue Mar 31 2020 23:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31846 * 119.06329 * 2 1 4 4 C 1.32398 * 121.06014 * 180.02562 * 3 2 1 5 5 C 1.38373 * 119.19208 * 359.97438 * 4 3 2 6 6 C 1.39714 * 118.28506 * 0.02562 * 5 4 3 7 7 C 1.48318 * 120.54913 * 179.97438 * 6 5 4 8 8 C 1.39428 * 120.09449 * 4.99809 * 7 6 5 9 9 C 1.38026 * 120.02024 * 179.72391 * 8 7 6 10 10 C 1.38231 * 120.19810 * 0.02562 * 9 8 7 11 11 C 1.38935 * 120.18168 * 359.97438 * 10 9 8 12 12 N 1.39941 * 120.00532 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99912 * 144.90785 * 12 11 10 14 14 O 1.21288 * 120.00040 * 4.60956 * 13 12 11 15 15 C 1.50698 * 120.00081 * 184.61485 * 13 12 11 16 16 H 1.08997 * 109.47356 * 39.99766 * 15 13 12 17 17 N 1.46900 * 109.47061 * 159.99630 * 15 13 12 18 18 C 1.53002 * 109.47164 * 279.99607 * 15 13 12 19 19 C 1.53003 * 109.46891 * 174.99794 * 18 15 13 20 20 C 1.50697 * 109.46644 * 180.02562 * 19 18 15 21 21 H 1.08001 * 120.00608 * 0.02562 * 20 19 18 22 22 C 1.37876 * 119.99921 * 179.97438 * 20 19 18 23 23 N 1.31518 * 120.00423 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00135 * 0.02562 * 22 20 19 25 25 H 1.48505 * 109.46909 * 89.99519 * 24 22 20 26 26 H 1.48498 * 109.47434 * 209.99741 * 24 22 20 27 27 H 1.48497 * 109.46783 * 329.99615 * 24 22 20 28 28 C 1.38680 * 119.98050 * 0.03923 * 11 10 9 29 29 N 1.31657 * 119.05832 * 180.25578 * 2 1 3 30 30 H 1.08999 * 109.47397 * 89.99796 * 1 2 3 31 31 H 1.09002 * 109.47427 * 209.99851 * 1 2 3 32 32 H 1.09001 * 109.47254 * 330.00055 * 1 2 3 33 33 H 1.08007 * 120.41024 * 180.02562 * 4 3 2 34 34 H 1.07997 * 120.85816 * 179.97438 * 5 4 3 35 35 H 1.08002 * 119.99108 * 359.75101 * 8 7 6 36 36 H 1.07995 * 119.90371 * 180.02562 * 9 8 7 37 37 H 1.07993 * 119.91039 * 180.02562 * 10 9 8 38 38 H 0.96995 * 120.00284 * 324.90229 * 12 11 10 39 39 H 1.00902 * 110.99890 * 60.00432 * 17 15 13 40 40 H 1.00903 * 110.99700 * 183.95153 * 17 15 13 41 41 H 1.08997 * 109.46909 * 295.00202 * 18 15 13 42 42 H 1.08999 * 109.46554 * 55.00026 * 18 15 13 43 43 H 1.08999 * 109.47185 * 299.99778 * 19 18 15 44 44 H 1.08991 * 109.47017 * 60.00544 * 19 18 15 45 45 H 0.96994 * 120.00749 * 180.02562 * 23 22 20 46 46 H 1.07999 * 120.09810 * 179.97438 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1474 1.1524 0.0000 4 6 3.4706 1.1986 -0.0005 5 6 4.1871 0.0148 -0.0005 6 6 3.4775 -1.1886 -0.0005 7 6 4.1949 -2.4868 -0.0011 8 6 5.5849 -2.5175 0.1035 9 6 6.2505 -3.7267 0.1085 10 6 5.5431 -4.9101 0.0096 11 6 4.1578 -4.8892 -0.0950 12 7 3.4453 -6.0896 -0.1944 13 6 2.2326 -6.2031 0.3825 14 8 1.7221 -5.2407 0.9157 15 6 1.5108 -7.5259 0.3652 16 1 2.2243 -8.3315 0.5384 17 7 0.4900 -7.5406 1.4215 18 6 0.8395 -7.7229 -0.9955 19 6 0.2126 -9.1172 -1.0578 20 6 -0.4480 -9.3114 -2.3982 21 1 -0.4229 -8.5198 -3.1325 22 6 -1.0836 -10.5002 -2.6878 23 7 -1.6606 -10.6696 -3.8574 24 14 -1.1266 -11.8698 -1.4182 25 1 -2.3342 -11.7182 -0.5673 26 1 -1.1692 -13.1838 -2.1087 27 1 0.0896 -11.7960 -0.5693 28 6 3.4815 -3.6786 -0.1011 29 7 2.1464 -1.1508 -0.0051 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 3.9845 2.1485 -0.0001 34 1 5.2671 0.0211 -0.0013 35 1 6.1409 -1.5949 0.1810 36 1 7.3271 -3.7483 0.1900 37 1 6.0685 -5.8536 0.0144 38 1 3.8242 -6.8398 -0.6786 39 1 -0.1840 -6.8025 1.2833 40 1 0.0357 -8.4401 1.4728 41 1 0.0637 -6.9693 -1.1303 42 1 1.5839 -7.6235 -1.7855 43 1 0.9885 -9.8708 -0.9229 44 1 -0.5317 -9.2165 -0.2678 45 1 -2.1081 -11.5057 -4.0610 46 1 2.4047 -3.6601 -0.1827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424077253.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:13 Heat of formation + Delta-G solvation = 32.957648 kcal Electronic energy + Delta-G solvation = -28064.872360 eV Core-core repulsion = 24147.107829 eV Total energy + Delta-G solvation = -3917.764532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.34224 -40.53528 -38.73678 -35.85571 -35.16234 -34.03232 -33.56028 -32.85498 -30.73739 -30.37965 -30.10610 -28.56204 -26.89008 -25.15303 -24.31523 -23.34499 -22.52026 -21.42258 -20.56278 -19.90749 -18.19181 -17.73145 -17.43311 -16.75510 -16.69353 -16.10716 -15.43996 -15.36942 -15.29441 -14.92379 -14.54116 -14.38312 -14.26078 -13.97628 -13.65427 -13.44128 -13.34763 -13.27221 -12.94602 -12.70698 -12.67943 -12.54772 -12.14764 -11.96095 -11.71669 -11.41414 -11.21282 -11.04185 -10.98719 -10.45551 -10.34272 -10.16415 -9.91109 -9.86715 -9.52910 -9.43277 -9.35523 -8.80612 -8.65407 -8.43133 -8.26948 -6.14649 -4.14672 0.18111 0.73920 1.15883 1.52184 2.67206 2.95690 3.22551 3.30964 3.31537 3.39123 3.58079 3.79911 3.81265 4.11994 4.34558 4.59755 4.64603 4.72844 4.78167 4.90364 4.95302 4.96456 5.12712 5.17792 5.18698 5.30672 5.34277 5.38118 5.38747 5.49342 5.54363 5.71727 5.81755 6.04118 6.05176 6.12271 6.18111 6.25639 6.29945 6.33340 6.58983 6.81231 6.84295 7.02921 7.15903 7.20360 7.42184 7.62096 7.70766 7.90084 8.18180 8.40979 8.89219 9.46223 10.98505 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013633 B = 0.002397 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.342973 B =11677.961850 C =12849.781625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.325 3.675 3 N -0.528 5.528 4 C 0.152 3.848 5 C -0.232 4.232 6 C 0.228 3.772 7 C -0.051 4.051 8 C -0.112 4.112 9 C -0.106 4.106 10 C -0.128 4.128 11 C 0.148 3.852 12 N -0.678 5.678 13 C 0.524 3.476 14 O -0.508 6.508 15 C 0.074 3.926 16 H 0.100 0.900 17 N -0.830 5.830 18 C -0.131 4.131 19 C -0.010 4.010 20 C -0.525 4.525 21 H 0.071 0.929 22 C 0.067 3.933 23 N -0.900 5.900 24 Si 0.881 3.119 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.265 1.265 28 C -0.073 4.073 29 N -0.506 5.506 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.169 0.831 34 H 0.149 0.851 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.414 0.586 39 H 0.349 0.651 40 H 0.352 0.648 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.019 0.981 44 H 0.012 0.988 45 H 0.264 0.736 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.552 18.966 8.926 26.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.058 3.942 3 N -0.243 5.243 4 C -0.013 4.013 5 C -0.254 4.254 6 C 0.083 3.917 7 C -0.052 4.052 8 C -0.132 4.132 9 C -0.125 4.125 10 C -0.149 4.149 11 C 0.053 3.947 12 N -0.324 5.324 13 C 0.312 3.688 14 O -0.381 6.381 15 C -0.041 4.041 16 H 0.118 0.882 17 N -0.362 5.362 18 C -0.171 4.171 19 C -0.047 4.047 20 C -0.563 4.563 21 H 0.090 0.910 22 C -0.134 4.134 23 N -0.538 5.538 24 Si 0.708 3.292 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.190 1.190 28 C -0.094 4.094 29 N -0.220 5.220 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.186 0.814 34 H 0.166 0.834 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.250 0.750 39 H 0.163 0.837 40 H 0.168 0.832 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.037 0.963 44 H 0.030 0.970 45 H 0.074 0.926 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 15.574 19.623 9.735 26.877 hybrid contribution 0.511 -1.398 -0.574 1.596 sum 16.085 18.225 9.161 25.977 Atomic orbital electron populations 1.20611 0.85459 1.04405 1.04121 1.23290 0.98319 0.83006 0.89592 1.68250 1.10275 1.30477 1.15311 1.23138 0.89630 0.98464 0.90050 1.22823 1.02842 0.93806 1.05896 1.20154 0.89207 0.92764 0.89552 1.18267 0.92487 0.90400 1.04062 1.21118 0.92637 0.98537 1.00873 1.20803 0.99894 0.91373 1.00415 1.21113 0.92372 0.99333 1.02111 1.17736 0.90856 0.86120 0.99976 1.43612 1.19472 1.14132 1.55186 1.21073 0.80124 0.91365 0.76252 1.90686 1.65197 1.39505 1.42715 1.21505 0.95734 0.93319 0.93514 0.88180 1.58728 1.19968 1.10324 1.47223 1.22237 1.00094 1.01100 0.93647 1.19569 0.95685 0.91490 0.97983 1.21052 1.34599 1.01614 0.99021 0.91040 1.25047 0.94716 0.98406 0.95266 1.69907 1.36163 1.26058 1.21702 0.86769 0.79012 0.81588 0.81838 1.20193 1.21310 1.18979 1.21555 1.02386 0.89321 0.96161 1.68343 1.08894 1.30472 1.14322 0.89432 0.89210 0.89589 0.81371 0.83358 0.85503 0.85068 0.85198 0.74962 0.83686 0.83238 0.91829 0.91816 0.96300 0.96980 0.92586 0.82596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.86 10.32 36.00 0.37 -0.49 16 2 C 0.33 4.11 7.64 -157.27 -1.20 2.91 16 3 N -0.53 -6.14 10.32 -10.79 -0.11 -6.25 16 4 C 0.15 1.37 11.30 -17.26 -0.19 1.17 16 5 C -0.23 -2.12 9.53 -38.98 -0.37 -2.49 16 6 C 0.23 2.85 6.76 -82.59 -0.56 2.29 16 7 C -0.05 -0.62 5.87 -104.93 -0.62 -1.24 16 8 C -0.11 -1.01 9.43 -39.22 -0.37 -1.38 16 9 C -0.11 -0.88 10.03 -39.66 -0.40 -1.27 16 10 C -0.13 -1.22 9.96 -39.33 -0.39 -1.62 16 11 C 0.15 1.86 6.29 -83.73 -0.53 1.33 16 12 N -0.68 -8.42 5.34 -9.89 -0.05 -8.47 16 13 C 0.52 8.07 6.92 -10.99 -0.08 7.99 16 14 O -0.51 -9.32 13.69 5.55 0.08 -9.25 16 15 C 0.07 1.13 3.21 -68.86 -0.22 0.91 16 16 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 17 N -0.83 -12.83 8.94 -5.65 -0.05 -12.88 16 18 C -0.13 -2.36 4.78 -26.73 -0.13 -2.49 16 19 C -0.01 -0.21 3.81 -27.88 -0.11 -0.32 16 20 C -0.53 -14.31 9.66 -34.44 -0.33 -14.64 16 21 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 22 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 23 N -0.90 -27.11 13.96 55.43 0.77 -26.33 16 24 Si 0.88 20.77 27.47 -169.99 -4.67 16.10 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.27 -5.89 6.54 56.52 0.37 -5.52 16 28 C -0.07 -1.05 8.24 -39.04 -0.32 -1.37 16 29 N -0.51 -7.20 9.50 -7.30 -0.07 -7.27 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.17 0.85 8.06 -52.48 -0.42 0.43 16 34 H 0.15 0.84 6.35 -52.49 -0.33 0.51 16 35 H 0.13 0.77 6.29 -52.49 -0.33 0.44 16 36 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 38 H 0.41 3.97 8.82 -40.82 -0.36 3.61 16 39 H 0.35 5.53 8.58 -39.29 -0.34 5.20 16 40 H 0.35 5.24 7.55 -39.29 -0.30 4.95 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 44 H 0.01 0.26 6.30 -51.93 -0.33 -0.07 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.16 2.67 5.75 -52.49 -0.30 2.37 16 LS Contribution 385.33 15.07 5.81 5.81 Total: -1.00 -34.90 385.33 -9.89 -44.79 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -6.05 Total: 12.65 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -5.54 Total: -8.89 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: 0.49 Total: -61.20 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.08 Total: -9.25 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.90 -9.89 -44.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424077253.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.743 kcal (2) G-P(sol) polarization free energy of solvation -34.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds