Wall clock time and date at job start Tue Mar 31 2020 23:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31846 * 119.06329 * 2 1 4 4 C 1.32398 * 121.06014 * 180.02562 * 3 2 1 5 5 C 1.38373 * 119.19208 * 359.97438 * 4 3 2 6 6 C 1.39714 * 118.28506 * 0.02562 * 5 4 3 7 7 C 1.48318 * 120.54913 * 179.97438 * 6 5 4 8 8 C 1.39428 * 120.09449 * 4.99809 * 7 6 5 9 9 C 1.38026 * 120.02024 * 179.72391 * 8 7 6 10 10 C 1.38231 * 120.19810 * 0.02562 * 9 8 7 11 11 C 1.38935 * 120.18168 * 359.97438 * 10 9 8 12 12 N 1.39941 * 120.00532 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99912 * 144.90785 * 12 11 10 14 14 O 1.21288 * 120.00040 * 4.60956 * 13 12 11 15 15 C 1.50698 * 120.00081 * 184.61485 * 13 12 11 16 16 H 1.08997 * 109.47356 * 39.99766 * 15 13 12 17 17 N 1.46900 * 109.47061 * 159.99630 * 15 13 12 18 18 C 1.53002 * 109.47164 * 279.99607 * 15 13 12 19 19 C 1.53003 * 109.46891 * 174.99794 * 18 15 13 20 20 C 1.50697 * 109.46644 * 180.02562 * 19 18 15 21 21 H 1.08001 * 120.00608 * 0.02562 * 20 19 18 22 22 C 1.37876 * 119.99921 * 179.97438 * 20 19 18 23 23 N 1.31518 * 120.00423 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00135 * 0.02562 * 22 20 19 25 25 H 1.48505 * 109.46909 * 89.99519 * 24 22 20 26 26 H 1.48498 * 109.47434 * 209.99741 * 24 22 20 27 27 H 1.48497 * 109.46783 * 329.99615 * 24 22 20 28 28 C 1.38680 * 119.98050 * 0.03923 * 11 10 9 29 29 N 1.31657 * 119.05832 * 180.25578 * 2 1 3 30 30 H 1.08999 * 109.47397 * 89.99796 * 1 2 3 31 31 H 1.09002 * 109.47427 * 209.99851 * 1 2 3 32 32 H 1.09001 * 109.47254 * 330.00055 * 1 2 3 33 33 H 1.08007 * 120.41024 * 180.02562 * 4 3 2 34 34 H 1.07997 * 120.85816 * 179.97438 * 5 4 3 35 35 H 1.08002 * 119.99108 * 359.75101 * 8 7 6 36 36 H 1.07995 * 119.90371 * 180.02562 * 9 8 7 37 37 H 1.07993 * 119.91039 * 180.02562 * 10 9 8 38 38 H 0.96995 * 120.00284 * 324.90229 * 12 11 10 39 39 H 1.00902 * 110.99890 * 60.00432 * 17 15 13 40 40 H 1.00903 * 110.99700 * 183.95153 * 17 15 13 41 41 H 1.08997 * 109.46909 * 295.00202 * 18 15 13 42 42 H 1.08999 * 109.46554 * 55.00026 * 18 15 13 43 43 H 1.08999 * 109.47185 * 299.99778 * 19 18 15 44 44 H 1.08991 * 109.47017 * 60.00544 * 19 18 15 45 45 H 0.96994 * 120.00749 * 180.02562 * 23 22 20 46 46 H 1.07999 * 120.09810 * 179.97438 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1474 1.1524 0.0000 4 6 3.4706 1.1986 -0.0005 5 6 4.1871 0.0148 -0.0005 6 6 3.4775 -1.1886 -0.0005 7 6 4.1949 -2.4868 -0.0011 8 6 5.5849 -2.5175 0.1035 9 6 6.2505 -3.7267 0.1085 10 6 5.5431 -4.9101 0.0096 11 6 4.1578 -4.8892 -0.0950 12 7 3.4453 -6.0896 -0.1944 13 6 2.2326 -6.2031 0.3825 14 8 1.7221 -5.2407 0.9157 15 6 1.5108 -7.5259 0.3652 16 1 2.2243 -8.3315 0.5384 17 7 0.4900 -7.5406 1.4215 18 6 0.8395 -7.7229 -0.9955 19 6 0.2126 -9.1172 -1.0578 20 6 -0.4480 -9.3114 -2.3982 21 1 -0.4229 -8.5198 -3.1325 22 6 -1.0836 -10.5002 -2.6878 23 7 -1.6606 -10.6696 -3.8574 24 14 -1.1266 -11.8698 -1.4182 25 1 -2.3342 -11.7182 -0.5673 26 1 -1.1692 -13.1838 -2.1087 27 1 0.0896 -11.7960 -0.5693 28 6 3.4815 -3.6786 -0.1011 29 7 2.1464 -1.1508 -0.0051 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 3.9845 2.1485 -0.0001 34 1 5.2671 0.0211 -0.0013 35 1 6.1409 -1.5949 0.1810 36 1 7.3271 -3.7483 0.1900 37 1 6.0685 -5.8536 0.0144 38 1 3.8242 -6.8398 -0.6786 39 1 -0.1840 -6.8025 1.2833 40 1 0.0357 -8.4401 1.4728 41 1 0.0637 -6.9693 -1.1303 42 1 1.5839 -7.6235 -1.7855 43 1 0.9885 -9.8708 -0.9229 44 1 -0.5317 -9.2165 -0.2678 45 1 -2.1081 -11.5057 -4.0610 46 1 2.4047 -3.6601 -0.1827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424077253.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:12 Heat of formation + Delta-G solvation = 7.535130 kcal Electronic energy + Delta-G solvation = -28065.974763 eV Core-core repulsion = 24147.107829 eV Total energy + Delta-G solvation = -3918.866935 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.16298 -41.57915 -39.67932 -37.24442 -36.19976 -34.88292 -34.83545 -34.35065 -32.11982 -31.53442 -31.00538 -29.37974 -28.35857 -25.97649 -25.78066 -24.25005 -23.42978 -22.50271 -21.95938 -21.11197 -19.27758 -18.88924 -18.56117 -18.31804 -17.52322 -16.87312 -16.43242 -16.32103 -16.27452 -16.12515 -16.05859 -15.73148 -15.43352 -15.05560 -14.76667 -14.56267 -14.45932 -14.26119 -14.16363 -14.08782 -13.63363 -13.47574 -13.33024 -13.10940 -12.87170 -12.64232 -12.50121 -12.12089 -12.06831 -11.93174 -11.77093 -11.68136 -11.42868 -11.34538 -10.79618 -10.76401 -10.64581 -10.29765 -9.72179 -9.62040 -9.15776 -8.30842 -6.36861 -0.61876 -0.02344 0.31233 0.73439 1.38256 1.39461 1.50899 1.52763 1.95098 2.35460 2.58307 2.81066 2.98400 3.04738 3.06614 3.38209 3.64822 3.68758 3.89582 3.97760 4.03585 4.07745 4.12846 4.18504 4.26106 4.44439 4.46095 4.52273 4.53048 4.59409 4.60765 4.68991 4.79334 4.91606 4.96821 5.02187 5.26569 5.32971 5.34669 5.41059 5.44612 5.48303 5.50814 5.61197 5.97513 6.00755 6.05303 6.23614 6.38061 6.44949 6.71834 7.08038 7.09268 7.28020 8.86055 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013633 B = 0.002397 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.342973 B =11677.961850 C =12849.781625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.302 3.698 3 N -0.542 5.542 4 C 0.150 3.850 5 C -0.217 4.217 6 C 0.197 3.803 7 C -0.068 4.068 8 C -0.101 4.101 9 C -0.097 4.097 10 C -0.120 4.120 11 C 0.121 3.879 12 N -0.665 5.665 13 C 0.521 3.479 14 O -0.545 6.545 15 C 0.086 3.914 16 H 0.128 0.872 17 N -0.830 5.830 18 C -0.120 4.120 19 C -0.005 4.005 20 C -0.536 4.536 21 H 0.024 0.976 22 C 0.001 3.999 23 N -0.954 5.954 24 Si 0.955 3.045 25 H -0.269 1.269 26 H -0.288 1.288 27 H -0.234 1.234 28 C -0.107 4.107 29 N -0.548 5.548 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.213 0.787 34 H 0.190 0.810 35 H 0.165 0.835 36 H 0.174 0.826 37 H 0.159 0.841 38 H 0.427 0.573 39 H 0.345 0.655 40 H 0.357 0.643 41 H 0.039 0.961 42 H 0.065 0.935 43 H 0.036 0.964 44 H 0.024 0.976 45 H 0.266 0.734 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.739 19.116 10.922 30.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.035 3.965 3 N -0.258 5.258 4 C -0.015 4.015 5 C -0.238 4.238 6 C 0.053 3.947 7 C -0.070 4.070 8 C -0.120 4.120 9 C -0.115 4.115 10 C -0.141 4.141 11 C 0.027 3.973 12 N -0.312 5.312 13 C 0.309 3.691 14 O -0.421 6.421 15 C -0.029 4.029 16 H 0.146 0.854 17 N -0.362 5.362 18 C -0.160 4.160 19 C -0.042 4.042 20 C -0.574 4.574 21 H 0.043 0.957 22 C -0.196 4.196 23 N -0.594 5.594 24 Si 0.778 3.222 25 H -0.194 1.194 26 H -0.214 1.214 27 H -0.157 1.157 28 C -0.128 4.128 29 N -0.263 5.263 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.229 0.771 34 H 0.207 0.793 35 H 0.182 0.818 36 H 0.192 0.808 37 H 0.177 0.823 38 H 0.266 0.734 39 H 0.158 0.842 40 H 0.173 0.827 41 H 0.058 0.942 42 H 0.084 0.916 43 H 0.054 0.946 44 H 0.042 0.958 45 H 0.075 0.925 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 19.813 19.775 11.727 30.350 hybrid contribution -0.704 -1.289 -1.292 1.956 sum 19.108 18.486 10.435 28.562 Atomic orbital electron populations 1.20628 0.84696 1.04508 1.04478 1.23623 0.99236 0.83211 0.90425 1.68300 1.11891 1.29811 1.15766 1.23937 0.88861 1.00305 0.88383 1.23214 1.04655 0.92278 1.03681 1.20570 0.89089 0.94339 0.90670 1.18517 0.94063 0.89593 1.04784 1.21560 0.91103 1.00690 0.98655 1.21349 1.01842 0.90261 0.98045 1.21488 0.90788 1.01456 1.00367 1.17965 0.92244 0.85225 1.01862 1.43423 1.18566 1.14811 1.54352 1.21089 0.80940 0.90812 0.76276 1.90689 1.66308 1.40475 1.44634 1.21425 0.95908 0.94248 0.91338 0.85446 1.58748 1.20031 1.10418 1.47024 1.22045 0.99571 0.98437 0.95920 1.19495 0.96055 0.93788 0.94900 1.21437 1.34890 1.00391 1.00653 0.95738 1.26109 0.94201 1.01623 0.97622 1.70084 1.37799 1.27097 1.24430 0.85589 0.80450 0.77193 0.78980 1.19408 1.21410 1.15676 1.21359 1.00831 0.91460 0.99181 1.68314 1.10600 1.31582 1.15808 0.88939 0.90403 0.88058 0.77063 0.79293 0.81808 0.80819 0.82295 0.73387 0.84213 0.82715 0.94197 0.91612 0.94599 0.95779 0.92508 0.86815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.84 10.32 71.23 0.73 -1.11 16 2 C 0.30 8.10 7.64 138.77 1.06 9.16 16 3 N -0.54 -12.47 10.32 -188.04 -1.94 -14.42 16 4 C 0.15 2.37 11.30 84.64 0.96 3.33 16 5 C -0.22 -3.47 9.53 22.66 0.22 -3.25 16 6 C 0.20 4.96 6.76 41.98 0.28 5.25 16 7 C -0.07 -1.65 5.87 -20.06 -0.12 -1.77 16 8 C -0.10 -1.48 9.43 22.51 0.21 -1.27 16 9 C -0.10 -1.17 10.03 22.22 0.22 -0.95 16 10 C -0.12 -1.94 9.96 22.44 0.22 -1.72 16 11 C 0.12 3.00 6.29 38.12 0.24 3.24 16 12 N -0.66 -16.37 5.34 -303.59 -1.62 -17.99 16 13 C 0.52 16.39 6.92 87.66 0.61 17.00 16 14 O -0.55 -21.28 13.69 -3.05 -0.04 -21.32 16 15 C 0.09 2.55 3.21 44.17 0.14 2.70 16 16 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 17 N -0.83 -25.23 8.94 -171.80 -1.54 -26.76 16 18 C -0.12 -4.37 4.78 30.60 0.15 -4.22 16 19 C 0.00 -0.21 3.81 29.85 0.11 -0.10 16 20 C -0.54 -30.02 9.66 25.60 0.25 -29.78 16 21 H 0.02 1.54 7.99 -2.91 -0.02 1.52 16 22 C 0.00 0.06 5.47 84.65 0.46 0.53 16 23 N -0.95 -59.42 13.96 21.45 0.30 -59.12 16 24 Si 0.96 42.27 27.47 68.60 1.88 44.15 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 27 H -0.23 -9.12 6.54 99.48 0.65 -8.47 16 28 C -0.11 -3.23 8.24 22.62 0.19 -3.04 16 29 N -0.55 -16.81 9.50 -176.99 -1.68 -18.49 16 30 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.21 1.29 8.06 -2.91 -0.02 1.27 16 34 H 0.19 1.24 6.35 -2.91 -0.02 1.22 16 35 H 0.16 1.10 6.29 -2.91 -0.02 1.08 16 36 H 0.17 0.69 8.06 -2.91 -0.02 0.66 16 37 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 38 H 0.43 7.67 8.82 -92.71 -0.82 6.85 16 39 H 0.34 11.20 8.58 -89.69 -0.77 10.43 16 40 H 0.36 10.07 7.55 -89.69 -0.68 9.39 16 41 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.04 1.43 7.20 -2.39 -0.02 1.41 16 44 H 0.02 0.98 6.30 -2.39 -0.02 0.96 16 45 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 46 H 0.11 4.38 5.75 -2.91 -0.02 4.36 16 Total: -1.00 -83.54 385.33 0.03 -83.51 By element: Atomic # 1 Polarization: 37.71 SS G_CDS: -1.27 Total: 36.44 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 5.94 Total: -6.00 kcal Atomic # 7 Polarization: -130.31 SS G_CDS: -6.48 Total: -136.78 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.04 Total: -21.32 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 1.88 Total: 44.15 kcal Total: -83.54 0.03 -83.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424077253.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.043 kcal (2) G-P(sol) polarization free energy of solvation -83.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds