Wall clock time and date at job start Tue Mar 31 2020 23:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40004 * 125.80718 * 2 1 4 4 C 1.35242 * 107.96774 * 180.02562 * 3 2 1 5 5 C 1.50708 * 126.19556 * 180.02562 * 4 3 2 6 6 N 1.35912 * 107.60865 * 0.26276 * 4 3 2 7 7 C 1.39488 * 126.10898 * 179.71610 * 6 4 3 8 8 C 1.39166 * 119.53219 * 154.73126 * 7 6 4 9 9 C 1.38028 * 119.25688 * 179.73338 * 8 7 6 10 10 C 1.40233 * 118.35320 * 0.52719 * 9 8 7 11 11 C 1.47666 * 120.49030 * 179.70987 * 10 9 8 12 12 O 1.21572 * 120.00667 * 354.54765 * 11 10 9 13 13 N 1.34779 * 119.99444 * 174.54651 * 11 10 9 14 14 C 1.46501 * 119.99760 * 184.97630 * 13 11 10 15 15 C 1.53003 * 109.47316 * 185.06641 * 14 13 11 16 16 C 1.50700 * 115.54574 * 56.04238 * 15 14 13 17 17 H 1.08006 * 119.99686 * 267.47952 * 16 15 14 18 18 C 1.37873 * 120.00147 * 87.48734 * 16 15 14 19 19 N 1.31514 * 119.99703 * 178.85763 * 18 16 15 20 20 Si 1.86800 * 120.00036 * 358.85564 * 18 16 15 21 21 H 1.48501 * 109.47220 * 91.34483 * 20 18 16 22 22 H 1.48492 * 109.47004 * 211.34513 * 20 18 16 23 23 H 1.48497 * 109.47057 * 331.34676 * 20 18 16 24 24 C 1.52997 * 117.49852 * 270.37351 * 15 14 13 25 25 C 1.53001 * 117.49964 * 201.71148 * 15 14 13 26 26 C 1.39546 * 119.00894 * 359.73483 * 10 9 8 27 27 N 1.31623 * 120.64019 * 359.97438 * 26 10 9 28 28 N 1.30785 * 125.81362 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.47302 * 90.00008 * 1 2 3 30 30 H 1.09001 * 109.47326 * 209.99579 * 1 2 3 31 31 H 1.08999 * 109.47167 * 329.99767 * 1 2 3 32 32 H 1.07996 * 126.02093 * 0.04633 * 3 2 1 33 33 H 1.08996 * 109.46989 * 90.02357 * 5 4 3 34 34 H 1.08993 * 109.47200 * 330.02237 * 5 4 3 35 35 H 1.09004 * 109.46949 * 210.02473 * 5 4 3 36 36 H 1.08002 * 120.36839 * 359.97438 * 8 7 6 37 37 H 1.08001 * 120.81934 * 180.26374 * 9 8 7 38 38 H 0.96994 * 120.00455 * 4.96971 * 13 11 10 39 39 H 1.09005 * 109.47117 * 305.06620 * 14 13 11 40 40 H 1.09001 * 109.47253 * 65.06481 * 14 13 11 41 41 H 0.97002 * 119.99634 * 179.97438 * 19 18 16 42 42 H 1.09004 * 117.49930 * 359.97438 * 24 15 14 43 43 H 1.09002 * 117.49796 * 145.01427 * 24 15 14 44 44 H 1.08998 * 117.49373 * 214.97506 * 25 15 14 45 45 H 1.08995 * 117.50129 * 359.97438 * 25 15 14 46 46 H 1.08003 * 119.67935 * 179.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3261 1.1354 0.0000 4 6 3.6135 0.7211 -0.0006 5 6 4.8333 1.6062 -0.0002 6 7 3.6080 -0.6380 -0.0069 7 6 4.7316 -1.4645 -0.0151 8 6 4.6373 -2.7554 0.4961 9 6 5.7512 -3.5704 0.4801 10 6 6.9454 -3.0558 -0.0450 11 6 8.1672 -3.8844 -0.0794 12 8 8.1706 -4.9844 0.4382 13 7 9.2787 -3.4210 -0.6848 14 6 10.4555 -4.2837 -0.8150 15 6 11.6106 -3.4830 -1.4197 16 6 11.9908 -2.2284 -0.6764 17 1 11.5484 -1.2824 -0.9519 18 6 12.9036 -2.2881 0.3552 19 7 13.2523 -1.1898 0.9891 20 14 13.6449 -3.9290 0.8526 21 1 14.9026 -4.1538 0.0956 22 1 13.9384 -3.9187 2.3082 23 1 12.6831 -5.0190 0.5492 24 6 11.7367 -3.4665 -2.9444 25 6 12.7329 -4.2674 -2.1022 26 6 6.9618 -1.7489 -0.5341 27 7 5.8744 -1.0080 -0.5048 28 7 2.2723 -1.0606 -0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.9893 2.1615 0.0007 33 1 5.1278 1.8185 1.0275 34 1 4.6045 2.5404 -0.5130 35 1 5.6498 1.0997 -0.5150 36 1 3.7020 -3.1168 0.8974 37 1 5.7053 -4.5779 0.8664 38 1 9.2994 -2.5165 -1.0343 39 1 10.7456 -4.6536 0.1685 40 1 10.2183 -5.1263 -1.4645 41 1 13.8942 -1.2319 1.7151 42 1 10.9971 -4.0265 -3.5167 43 1 12.0951 -2.5483 -3.4099 44 1 13.7463 -3.8758 -2.0140 45 1 12.6488 -5.3540 -2.1201 46 1 7.8758 -1.3415 -0.9406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431176550.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:06 Heat of formation + Delta-G solvation = 110.227048 kcal Electronic energy + Delta-G solvation = -28322.202124 eV Core-core repulsion = 24407.788245 eV Total energy + Delta-G solvation = -3914.413879 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.91560 -40.46779 -38.86998 -37.10858 -34.48914 -33.75796 -32.88348 -32.38767 -32.20041 -30.79825 -28.49989 -27.26129 -26.67660 -25.36896 -24.11693 -23.65762 -21.81163 -20.63477 -20.55840 -19.92669 -19.42531 -18.02431 -17.52194 -16.91657 -16.29637 -15.84126 -15.22732 -15.13291 -14.95824 -14.82458 -14.45217 -14.14298 -14.03881 -13.80849 -13.59771 -13.46291 -13.34196 -13.09714 -12.92522 -12.82547 -12.65208 -12.57644 -12.46050 -12.18468 -12.02078 -11.22449 -10.94157 -10.82829 -10.58076 -10.36422 -10.26272 -10.17151 -10.05444 -9.73171 -9.53937 -9.26049 -9.11222 -8.75545 -8.66625 -8.56595 -8.34565 -6.22674 -4.28297 0.20242 0.95045 1.62731 1.87885 2.43443 2.97882 3.23771 3.34917 3.37770 3.48746 3.72928 4.00863 4.16302 4.34005 4.40215 4.59015 4.66452 4.74356 4.79171 4.95757 5.01210 5.10511 5.16926 5.26340 5.31652 5.37853 5.40238 5.45038 5.56374 5.60404 5.71445 5.79472 5.89662 5.93210 5.99490 6.05766 6.12764 6.13374 6.33235 6.36564 6.41395 6.63802 6.86035 6.87257 6.97311 7.01339 7.16411 7.60187 7.61483 7.96506 8.32383 8.53457 8.76141 9.40398 10.88229 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018873 B = 0.002409 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.217664 B =11619.721155 C =12175.414692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.090 3.910 3 C -0.270 4.270 4 C 0.117 3.883 5 C -0.109 4.109 6 N -0.328 5.328 7 C 0.383 3.617 8 C -0.169 4.169 9 C 0.002 3.998 10 C -0.185 4.185 11 C 0.556 3.444 12 O -0.549 6.549 13 N -0.690 5.690 14 C 0.153 3.847 15 C -0.018 4.018 16 C -0.493 4.493 17 H 0.079 0.921 18 C 0.082 3.918 19 N -0.892 5.892 20 Si 0.878 3.122 21 H -0.278 1.278 22 H -0.294 1.294 23 H -0.256 1.256 24 C -0.179 4.179 25 C -0.192 4.192 26 C 0.169 3.831 27 N -0.502 5.502 28 N -0.286 5.286 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.154 0.846 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.150 0.850 37 H 0.157 0.843 38 H 0.405 0.595 39 H 0.069 0.931 40 H 0.046 0.954 41 H 0.266 0.734 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.075 0.925 46 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.734 3.061 -2.986 21.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.079 4.079 3 C -0.298 4.298 4 C -0.005 4.005 5 C -0.167 4.167 6 N -0.106 5.106 7 C 0.157 3.843 8 C -0.191 4.191 9 C -0.024 4.024 10 C -0.191 4.191 11 C 0.341 3.659 12 O -0.428 6.428 13 N -0.339 5.339 14 C 0.030 3.970 15 C -0.019 4.019 16 C -0.530 4.530 17 H 0.097 0.903 18 C -0.122 4.122 19 N -0.529 5.529 20 Si 0.706 3.294 21 H -0.204 1.204 22 H -0.221 1.221 23 H -0.181 1.181 24 C -0.216 4.216 25 C -0.230 4.230 26 C 0.010 3.990 27 N -0.215 5.215 28 N -0.106 5.106 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.172 0.828 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.124 0.876 36 H 0.168 0.832 37 H 0.174 0.826 38 H 0.241 0.759 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.093 0.907 46 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -20.443 1.905 -2.812 20.723 hybrid contribution 0.584 -0.261 0.521 0.825 sum -19.859 1.644 -2.290 20.058 Atomic orbital electron populations 1.20232 0.85994 1.03623 1.03296 1.22568 0.97215 0.90706 0.97393 1.21247 0.90809 1.00024 1.17680 1.21585 0.97807 0.83529 0.97571 1.20790 0.94244 0.97815 1.03853 1.45563 1.03650 1.03785 1.57593 1.17849 0.84536 0.88016 0.93936 1.21598 1.01022 0.93168 1.03356 1.21641 0.89653 1.00133 0.91016 1.21152 0.96132 0.96553 1.05286 1.17834 0.82904 0.86030 0.79129 1.90753 1.84419 1.21406 1.46248 1.45753 1.12641 1.17999 1.57519 1.21213 0.83957 0.90989 1.00830 1.19623 0.93693 0.97267 0.91353 1.20145 1.25453 0.91611 1.15827 0.90300 1.24965 0.95607 0.96264 0.95361 1.69879 1.32799 1.27489 1.22701 0.86873 0.80137 0.85179 0.77201 1.20394 1.22051 1.18052 1.22888 1.02160 1.01533 0.95001 1.22941 0.96282 0.96670 1.07106 1.22915 0.95067 0.89017 0.92021 1.66949 0.98607 1.38013 1.17907 1.77429 0.84469 1.22370 1.26320 0.90145 0.90643 0.90066 0.82791 0.90313 0.89790 0.87602 0.83228 0.82573 0.75923 0.91238 0.93533 0.92409 0.90837 0.89316 0.89099 0.90695 0.80666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.44 36.01 0.38 -0.09 16 2 C 0.09 0.95 7.21 -82.38 -0.59 0.36 16 3 C -0.27 -2.75 10.65 -39.99 -0.43 -3.18 16 4 C 0.12 1.39 6.89 -81.85 -0.56 0.83 16 5 C -0.11 -1.07 9.98 36.01 0.36 -0.71 16 6 N -0.33 -4.44 3.77 -8.37 -0.03 -4.48 16 7 C 0.38 5.27 7.35 -154.49 -1.14 4.13 16 8 C -0.17 -2.12 9.71 -39.31 -0.38 -2.50 16 9 C 0.00 0.03 9.70 -38.91 -0.38 -0.35 16 10 C -0.19 -2.66 5.89 -104.81 -0.62 -3.28 16 11 C 0.56 9.69 7.76 -12.41 -0.10 9.59 16 12 O -0.55 -11.20 16.41 5.30 0.09 -11.12 16 13 N -0.69 -12.18 5.31 -61.30 -0.33 -12.51 16 14 C 0.15 3.05 5.34 -4.04 -0.02 3.03 16 15 C -0.02 -0.38 0.93 -155.66 -0.14 -0.52 16 16 C -0.49 -12.31 8.88 -34.44 -0.31 -12.62 16 17 H 0.08 2.10 8.06 -52.48 -0.42 1.68 16 18 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 19 N -0.89 -25.63 13.96 55.43 0.77 -24.85 16 20 Si 0.88 20.87 24.90 -169.99 -4.23 16.64 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.26 -5.83 5.60 56.52 0.32 -5.51 16 24 C -0.18 -3.24 9.93 -26.69 -0.27 -3.51 16 25 C -0.19 -3.77 7.59 -26.69 -0.20 -3.97 16 26 C 0.17 2.23 10.70 -17.15 -0.18 2.04 16 27 N -0.50 -6.79 7.61 -11.99 -0.09 -6.88 16 28 N -0.29 -3.76 12.08 33.69 0.41 -3.35 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.11 1.18 5.84 -51.93 -0.30 0.88 16 36 H 0.15 1.69 7.89 -52.49 -0.41 1.27 16 37 H 0.16 1.86 7.74 -52.49 -0.41 1.45 16 38 H 0.40 6.50 6.25 -40.82 -0.26 6.25 16 39 H 0.07 1.55 6.45 -51.93 -0.34 1.21 16 40 H 0.05 0.87 8.10 -51.93 -0.42 0.45 16 41 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 44 H 0.09 1.88 7.20 -51.93 -0.37 1.51 16 45 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 46 H 0.18 2.02 6.43 -52.48 -0.34 1.68 16 LS Contribution 383.75 15.07 5.78 5.78 Total: -1.00 -31.78 383.75 -8.60 -40.38 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -6.29 Total: 9.03 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -4.68 Total: -8.65 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: 0.73 Total: -52.07 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.23 Total: 16.64 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.78 -8.60 -40.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431176550.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.610 kcal (2) G-P(sol) polarization free energy of solvation -31.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds