Wall clock time and date at job start Tue Mar 31 2020 23:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40004 * 125.80718 * 2 1 4 4 C 1.35242 * 107.96774 * 180.02562 * 3 2 1 5 5 C 1.50708 * 126.19556 * 180.02562 * 4 3 2 6 6 N 1.35912 * 107.60865 * 0.26276 * 4 3 2 7 7 C 1.39488 * 126.10898 * 179.71610 * 6 4 3 8 8 C 1.39166 * 119.53219 * 154.73126 * 7 6 4 9 9 C 1.38028 * 119.25688 * 179.73338 * 8 7 6 10 10 C 1.40233 * 118.35320 * 0.52719 * 9 8 7 11 11 C 1.47666 * 120.49030 * 179.70987 * 10 9 8 12 12 O 1.21572 * 120.00667 * 354.54765 * 11 10 9 13 13 N 1.34779 * 119.99444 * 174.54651 * 11 10 9 14 14 C 1.46501 * 119.99760 * 184.97630 * 13 11 10 15 15 C 1.53003 * 109.47316 * 185.06641 * 14 13 11 16 16 C 1.50700 * 115.54574 * 56.04238 * 15 14 13 17 17 H 1.08006 * 119.99686 * 267.47952 * 16 15 14 18 18 C 1.37873 * 120.00147 * 87.48734 * 16 15 14 19 19 N 1.31514 * 119.99703 * 178.85763 * 18 16 15 20 20 Si 1.86800 * 120.00036 * 358.85564 * 18 16 15 21 21 H 1.48501 * 109.47220 * 91.34483 * 20 18 16 22 22 H 1.48492 * 109.47004 * 211.34513 * 20 18 16 23 23 H 1.48497 * 109.47057 * 331.34676 * 20 18 16 24 24 C 1.52997 * 117.49852 * 270.37351 * 15 14 13 25 25 C 1.53001 * 117.49964 * 201.71148 * 15 14 13 26 26 C 1.39546 * 119.00894 * 359.73483 * 10 9 8 27 27 N 1.31623 * 120.64019 * 359.97438 * 26 10 9 28 28 N 1.30785 * 125.81362 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.47302 * 90.00008 * 1 2 3 30 30 H 1.09001 * 109.47326 * 209.99579 * 1 2 3 31 31 H 1.08999 * 109.47167 * 329.99767 * 1 2 3 32 32 H 1.07996 * 126.02093 * 0.04633 * 3 2 1 33 33 H 1.08996 * 109.46989 * 90.02357 * 5 4 3 34 34 H 1.08993 * 109.47200 * 330.02237 * 5 4 3 35 35 H 1.09004 * 109.46949 * 210.02473 * 5 4 3 36 36 H 1.08002 * 120.36839 * 359.97438 * 8 7 6 37 37 H 1.08001 * 120.81934 * 180.26374 * 9 8 7 38 38 H 0.96994 * 120.00455 * 4.96971 * 13 11 10 39 39 H 1.09005 * 109.47117 * 305.06620 * 14 13 11 40 40 H 1.09001 * 109.47253 * 65.06481 * 14 13 11 41 41 H 0.97002 * 119.99634 * 179.97438 * 19 18 16 42 42 H 1.09004 * 117.49930 * 359.97438 * 24 15 14 43 43 H 1.09002 * 117.49796 * 145.01427 * 24 15 14 44 44 H 1.08998 * 117.49373 * 214.97506 * 25 15 14 45 45 H 1.08995 * 117.50129 * 359.97438 * 25 15 14 46 46 H 1.08003 * 119.67935 * 179.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3261 1.1354 0.0000 4 6 3.6135 0.7211 -0.0006 5 6 4.8333 1.6062 -0.0002 6 7 3.6080 -0.6380 -0.0069 7 6 4.7316 -1.4645 -0.0151 8 6 4.6373 -2.7554 0.4961 9 6 5.7512 -3.5704 0.4801 10 6 6.9454 -3.0558 -0.0450 11 6 8.1672 -3.8844 -0.0794 12 8 8.1706 -4.9844 0.4382 13 7 9.2787 -3.4210 -0.6848 14 6 10.4555 -4.2837 -0.8150 15 6 11.6106 -3.4830 -1.4197 16 6 11.9908 -2.2284 -0.6764 17 1 11.5484 -1.2824 -0.9519 18 6 12.9036 -2.2881 0.3552 19 7 13.2523 -1.1898 0.9891 20 14 13.6449 -3.9290 0.8526 21 1 14.9026 -4.1538 0.0956 22 1 13.9384 -3.9187 2.3082 23 1 12.6831 -5.0190 0.5492 24 6 11.7367 -3.4665 -2.9444 25 6 12.7329 -4.2674 -2.1022 26 6 6.9618 -1.7489 -0.5341 27 7 5.8744 -1.0080 -0.5048 28 7 2.2723 -1.0606 -0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.9893 2.1615 0.0007 33 1 5.1278 1.8185 1.0275 34 1 4.6045 2.5404 -0.5130 35 1 5.6498 1.0997 -0.5150 36 1 3.7020 -3.1168 0.8974 37 1 5.7053 -4.5779 0.8664 38 1 9.2994 -2.5165 -1.0343 39 1 10.7456 -4.6536 0.1685 40 1 10.2183 -5.1263 -1.4645 41 1 13.8942 -1.2319 1.7151 42 1 10.9971 -4.0265 -3.5167 43 1 12.0951 -2.5483 -3.4099 44 1 13.7463 -3.8758 -2.0140 45 1 12.6488 -5.3540 -2.1201 46 1 7.8758 -1.3415 -0.9406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431176550.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:05 Heat of formation + Delta-G solvation = 91.585466 kcal Electronic energy + Delta-G solvation = -28323.010484 eV Core-core repulsion = 24407.788245 eV Total energy + Delta-G solvation = -3915.222239 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.80616 -41.57996 -40.19685 -38.69220 -35.46813 -35.11590 -34.21079 -33.90116 -33.29154 -31.71323 -29.39669 -28.23016 -28.04147 -27.09833 -25.16835 -24.73419 -23.33148 -21.85212 -21.46633 -21.11018 -20.85006 -19.20988 -18.70706 -18.24724 -17.79748 -16.92942 -16.81816 -16.39230 -16.24684 -16.08784 -15.72956 -15.15058 -15.11629 -14.80575 -14.75035 -14.56204 -14.35892 -14.32357 -14.14037 -14.07636 -13.85874 -13.72831 -13.30623 -13.20891 -13.09104 -12.80436 -12.62687 -12.18208 -11.98328 -11.77779 -11.61126 -11.39157 -11.28719 -11.11477 -10.97663 -10.74336 -10.64119 -10.36675 -10.03684 -9.91430 -9.41995 -8.28955 -6.34918 -0.85244 -0.06479 0.70310 0.97455 1.33830 1.40788 1.49324 1.65837 1.75809 2.11962 2.36922 2.58897 3.02735 3.07346 3.22551 3.28948 3.53265 3.61939 3.69604 3.80639 3.92421 4.04022 4.13195 4.37382 4.39772 4.43574 4.46116 4.54761 4.59572 4.67434 4.69100 4.75828 4.82730 4.86504 4.89190 4.91042 5.01749 5.09498 5.12014 5.15959 5.28320 5.28679 5.47588 5.52028 5.60966 5.71040 5.96459 6.23875 6.29464 6.56737 6.67706 6.74395 7.14941 7.36157 8.85052 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018873 B = 0.002409 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.217664 B =11619.721155 C =12175.414692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.090 3.910 3 C -0.264 4.264 4 C 0.094 3.906 5 C -0.106 4.106 6 N -0.346 5.346 7 C 0.378 3.622 8 C -0.168 4.168 9 C 0.010 3.990 10 C -0.199 4.199 11 C 0.560 3.440 12 O -0.581 6.581 13 N -0.690 5.690 14 C 0.161 3.839 15 C -0.042 4.042 16 C -0.476 4.476 17 H 0.052 0.948 18 C 0.028 3.972 19 N -0.942 5.942 20 Si 0.924 3.076 21 H -0.269 1.269 22 H -0.307 1.307 23 H -0.239 1.239 24 C -0.151 4.151 25 C -0.194 4.194 26 C 0.176 3.824 27 N -0.508 5.508 28 N -0.319 5.319 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.184 0.816 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.161 0.839 37 H 0.166 0.834 38 H 0.411 0.589 39 H 0.042 0.958 40 H 0.066 0.934 41 H 0.263 0.737 42 H 0.105 0.895 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.099 0.901 46 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.759 2.811 -4.226 23.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.079 4.079 3 C -0.292 4.292 4 C -0.027 4.027 5 C -0.164 4.164 6 N -0.124 5.124 7 C 0.151 3.849 8 C -0.190 4.190 9 C -0.017 4.017 10 C -0.205 4.205 11 C 0.347 3.653 12 O -0.463 6.463 13 N -0.339 5.339 14 C 0.037 3.963 15 C -0.043 4.043 16 C -0.513 4.513 17 H 0.070 0.930 18 C -0.170 4.170 19 N -0.581 5.581 20 Si 0.751 3.249 21 H -0.194 1.194 22 H -0.235 1.235 23 H -0.162 1.162 24 C -0.188 4.188 25 C -0.231 4.231 26 C 0.016 3.984 27 N -0.221 5.221 28 N -0.139 5.139 29 H 0.112 0.888 30 H 0.095 0.905 31 H 0.124 0.876 32 H 0.202 0.798 33 H 0.099 0.901 34 H 0.126 0.874 35 H 0.108 0.892 36 H 0.179 0.821 37 H 0.183 0.817 38 H 0.248 0.752 39 H 0.061 0.939 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.123 0.877 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.117 0.883 46 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -22.490 1.667 -4.085 22.919 hybrid contribution 1.043 -0.046 0.855 1.349 sum -21.448 1.620 -3.231 21.750 Atomic orbital electron populations 1.20418 0.83107 1.04935 1.04507 1.23331 0.98966 0.90236 0.95372 1.21684 0.90052 1.01348 1.16088 1.22090 0.99208 0.83254 0.98107 1.20808 0.93131 0.98310 1.04104 1.45724 1.03684 1.04363 1.58640 1.18146 0.84821 0.88551 0.93388 1.21677 1.01274 0.92822 1.03226 1.21740 0.89214 1.00499 0.90217 1.20912 0.95346 0.96814 1.07448 1.18150 0.83384 0.85753 0.78040 1.90728 1.85035 1.22920 1.47629 1.45716 1.12315 1.18180 1.57725 1.21002 0.84117 0.91594 0.99593 1.19486 0.95235 0.96430 0.93193 1.20344 1.23577 0.92448 1.14968 0.93024 1.25662 0.96732 0.98670 0.95969 1.70006 1.34562 1.29497 1.24060 0.86124 0.80134 0.82601 0.76090 1.19412 1.23452 1.16225 1.22923 1.01601 1.01389 0.92935 1.23006 0.95293 0.98083 1.06749 1.23068 0.95474 0.88538 0.91323 1.67041 0.98704 1.37972 1.18356 1.77408 0.84593 1.23880 1.28046 0.88813 0.90463 0.87640 0.79842 0.90051 0.87439 0.89198 0.82111 0.81690 0.75158 0.93937 0.91601 0.92789 0.87705 0.89554 0.90465 0.88284 0.79533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.44 71.24 0.74 0.03 16 2 C 0.09 1.72 7.21 43.14 0.31 2.04 16 3 C -0.26 -4.80 10.65 22.01 0.23 -4.57 16 4 C 0.09 2.13 6.89 41.24 0.28 2.41 16 5 C -0.11 -1.96 9.98 71.24 0.71 -1.25 16 6 N -0.35 -9.16 3.77 -180.40 -0.68 -9.84 16 7 C 0.38 10.26 7.35 132.89 0.98 11.24 16 8 C -0.17 -4.14 9.71 22.44 0.22 -3.92 16 9 C 0.01 0.25 9.70 22.70 0.22 0.47 16 10 C -0.20 -5.66 5.89 -19.99 -0.12 -5.78 16 11 C 0.56 19.33 7.76 86.73 0.67 20.00 16 12 O -0.58 -23.61 16.41 -3.94 -0.06 -23.68 16 13 N -0.69 -23.93 5.31 -466.13 -2.48 -26.41 16 14 C 0.16 6.17 5.34 86.38 0.46 6.63 16 15 C -0.04 -1.70 0.93 -52.93 -0.05 -1.75 16 16 C -0.48 -23.92 8.88 25.60 0.23 -23.69 16 17 H 0.05 2.82 8.06 -2.91 -0.02 2.79 16 18 C 0.03 1.53 5.47 84.65 0.46 1.99 16 19 N -0.94 -55.80 13.96 21.45 0.30 -55.51 16 20 Si 0.92 43.13 24.90 68.60 1.71 44.84 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 22 H -0.31 -14.87 7.11 99.48 0.71 -14.16 16 23 H -0.24 -10.39 5.60 99.48 0.56 -9.83 16 24 C -0.15 -5.05 9.93 30.62 0.30 -4.75 16 25 C -0.19 -7.08 7.59 30.62 0.23 -6.85 16 26 C 0.18 4.58 10.70 85.04 0.91 5.49 16 27 N -0.51 -13.63 7.61 -191.84 -1.46 -15.09 16 28 N -0.32 -8.09 12.08 -47.33 -0.57 -8.66 16 29 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.09 1.98 5.84 -2.38 -0.01 1.97 16 36 H 0.16 3.54 7.89 -2.91 -0.02 3.52 16 37 H 0.17 3.84 7.74 -2.91 -0.02 3.82 16 38 H 0.41 13.04 6.25 -92.71 -0.58 12.46 16 39 H 0.04 1.86 6.45 -2.38 -0.02 1.84 16 40 H 0.07 2.28 8.10 -2.39 -0.02 2.26 16 41 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 42 H 0.10 2.90 8.14 -2.38 -0.02 2.88 16 43 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 44 H 0.08 3.05 7.20 -2.39 -0.02 3.03 16 45 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 46 H 0.19 4.26 6.43 -2.91 -0.02 4.25 16 Total: -1.00 -69.86 383.75 3.85 -66.01 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: 0.29 Total: 30.58 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 6.80 Total: -2.25 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -4.89 Total: -115.50 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.06 Total: -23.68 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.71 Total: 44.84 kcal Total: -69.86 3.85 -66.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431176550.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.593 kcal (2) G-P(sol) polarization free energy of solvation -69.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds