Wall clock time and date at job start Tue Mar 31 2020 23:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35366 * 126.97430 * 2 1 4 4 C 1.50697 * 126.73277 * 0.04921 * 3 2 1 5 5 C 1.50699 * 109.47234 * 270.28762 * 4 3 2 6 6 O 1.21279 * 119.99828 * 0.02562 * 5 4 3 7 7 N 1.34781 * 119.99972 * 179.97438 * 5 4 3 8 8 C 1.46495 * 119.99684 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47269 * 178.28031 * 8 7 5 10 10 C 1.50704 * 115.54817 * 65.14136 * 9 8 7 11 11 H 1.07999 * 119.99807 * 265.40909 * 10 9 8 12 12 C 1.37873 * 120.00091 * 85.41007 * 10 9 8 13 13 N 1.31513 * 119.99797 * 353.54868 * 12 10 9 14 14 Si 1.86799 * 120.00205 * 173.55573 * 12 10 9 15 15 H 1.48498 * 109.47328 * 89.99282 * 14 12 10 16 16 H 1.48492 * 109.47248 * 209.99649 * 14 12 10 17 17 H 1.48500 * 109.46927 * 329.99492 * 14 12 10 18 18 C 1.53001 * 117.49830 * 279.47538 * 9 8 7 19 19 C 1.52998 * 117.50254 * 210.81471 * 9 8 7 20 20 N 1.33771 * 106.53517 * 180.26786 * 3 2 1 21 21 N 1.28608 * 109.06521 * 359.76028 * 20 3 2 22 22 N 1.28725 * 110.23060 * 0.02562 * 21 20 3 23 23 C 1.40247 * 125.94461 * 179.97438 * 22 21 20 24 24 C 1.38830 * 120.06211 * 325.01775 * 23 22 21 25 25 C 1.38120 * 119.93350 * 179.97438 * 24 23 22 26 26 C 1.38271 * 120.06685 * 0.02562 * 25 24 23 27 27 C 1.38282 * 120.12937 * 0.02562 * 26 25 24 28 28 C 1.38118 * 120.06551 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.47049 * 270.14828 * 1 2 3 30 30 H 1.08998 * 109.47208 * 30.14859 * 1 2 3 31 31 H 1.08998 * 109.47451 * 150.15010 * 1 2 3 32 32 H 1.09002 * 109.47164 * 30.29499 * 4 3 2 33 33 H 1.09005 * 109.47143 * 150.28708 * 4 3 2 34 34 H 0.96999 * 119.99827 * 0.02562 * 7 5 4 35 35 H 1.08999 * 109.47472 * 298.27963 * 8 7 5 36 36 H 1.08997 * 109.47280 * 58.28188 * 8 7 5 37 37 H 0.97001 * 119.99581 * 185.07501 * 13 12 10 38 38 H 1.08998 * 117.49809 * 359.97438 * 18 9 8 39 39 H 1.08997 * 117.49770 * 145.01831 * 18 9 8 40 40 H 1.09001 * 117.49724 * 214.97891 * 19 9 8 41 41 H 1.09003 * 117.49984 * 359.96986 * 19 9 8 42 42 H 1.07998 * 120.02994 * 0.02562 * 24 23 22 43 43 H 1.07997 * 119.96209 * 179.72634 * 25 24 23 44 44 H 1.07997 * 119.93545 * 179.97438 * 26 25 24 45 45 H 1.08000 * 119.96457 * 179.97438 * 27 26 25 46 46 H 1.07998 * 120.03169 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3212 1.0814 0.0000 4 6 1.8984 2.5279 0.0010 5 6 1.7497 3.0088 -1.4194 6 8 1.9653 2.2514 -2.3417 7 7 1.3761 4.2803 -1.6647 8 6 1.2309 4.7476 -3.0455 9 6 0.7598 6.2033 -3.0445 10 6 1.7313 7.2004 -2.4673 11 1 1.6546 7.4906 -1.4299 12 6 2.7178 7.7421 -3.2637 13 7 2.8922 7.2970 -4.4889 14 14 3.8069 9.1081 -2.6024 15 1 5.0032 8.5162 -1.9514 16 1 4.2354 9.9852 -3.7214 17 1 3.0479 9.9090 -1.6085 18 6 -0.7321 6.4628 -2.8263 19 6 -0.1147 6.6636 -4.2125 20 7 3.5747 0.6143 -0.0060 21 7 3.5439 -0.6714 -0.0044 22 7 2.3257 -1.0874 0.0018 23 6 1.9136 -2.4280 0.0048 24 6 2.6469 -3.3825 -0.6870 25 6 2.2390 -4.7021 -0.6819 26 6 1.1012 -5.0727 0.0109 27 6 0.3682 -4.1240 0.7000 28 6 0.7712 -2.8030 0.6985 29 1 -0.3633 0.0027 1.0277 30 1 -0.3633 0.8886 -0.5161 31 1 -0.3634 -0.8913 -0.5115 32 1 0.9452 2.6274 0.5202 33 1 2.6536 3.1268 0.5102 34 1 1.2033 4.8860 -0.9270 35 1 2.1914 4.6770 -3.5559 36 1 0.4980 4.1290 -3.5634 37 1 3.6320 7.6254 -5.0234 38 1 -1.3781 5.5964 -2.6838 39 1 -1.0110 7.3549 -2.2656 40 1 0.0123 7.6879 -4.5632 41 1 -0.3541 5.9296 -4.9819 42 1 3.5359 -3.0936 -1.2280 43 1 2.8066 -5.4442 -1.2235 44 1 0.7839 -6.1051 0.0131 45 1 -0.5203 -4.4164 1.2399 46 1 0.1986 -2.0626 1.2373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431178694.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:46 Heat of formation + Delta-G solvation = 111.649017 kcal Electronic energy + Delta-G solvation = -28350.112606 eV Core-core repulsion = 24435.760388 eV Total energy + Delta-G solvation = -3914.352218 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.50129 -39.68510 -38.98618 -36.70151 -34.93193 -33.78248 -33.25455 -31.96712 -31.56979 -30.60881 -29.37625 -27.27102 -25.95799 -24.98238 -24.23927 -23.27710 -21.40123 -21.13612 -20.99504 -19.71260 -19.26157 -18.21382 -17.01964 -16.83090 -16.41316 -15.99903 -15.29565 -15.17261 -14.96419 -14.80999 -14.62071 -14.16500 -14.09924 -13.88301 -13.49787 -13.39774 -13.25211 -13.04793 -12.90620 -12.58094 -12.31559 -12.03590 -11.82516 -11.63211 -11.55293 -11.47060 -10.98601 -10.93164 -10.91286 -10.67978 -10.51835 -10.27898 -9.66976 -9.55142 -9.39504 -9.06471 -8.96820 -8.88967 -8.49150 -8.27733 -8.06906 -6.07029 -4.15937 0.38143 0.78705 1.67550 2.12453 2.48940 3.18153 3.21872 3.27856 3.35632 3.36715 3.91670 4.15483 4.27690 4.36131 4.36842 4.56072 4.57346 4.71357 4.80568 4.83165 5.00351 5.15190 5.18046 5.20923 5.26044 5.39664 5.46018 5.48367 5.55560 5.61977 5.75535 5.77426 5.92328 5.97389 6.02869 6.15973 6.20579 6.32923 6.46349 6.56224 6.67748 6.71309 6.89466 7.08858 7.29082 7.43607 7.48785 7.82233 8.30432 8.33953 8.46623 8.84396 8.90414 9.51245 11.00777 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021340 B = 0.002213 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.804875 B =12649.815691 C =13169.165695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.003 4.003 3 C 0.014 3.986 4 C -0.058 4.058 5 C 0.507 3.493 6 O -0.549 6.549 7 N -0.702 5.702 8 C 0.164 3.836 9 C 0.028 3.972 10 C -0.501 4.501 11 H 0.061 0.939 12 C 0.074 3.926 13 N -0.874 5.874 14 Si 0.890 3.110 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.210 4.210 19 C -0.149 4.149 20 N -0.243 5.243 21 N -0.082 5.082 22 N -0.251 5.251 23 C 0.127 3.873 24 C -0.097 4.097 25 C -0.102 4.102 26 C -0.112 4.112 27 C -0.103 4.103 28 C -0.116 4.116 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.401 0.599 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.262 0.738 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.132 0.868 45 H 0.136 0.864 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.354 -21.897 12.111 26.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C -0.123 4.123 4 C -0.100 4.100 5 C 0.291 3.709 6 O -0.427 6.427 7 N -0.351 5.351 8 C 0.041 3.959 9 C 0.028 3.972 10 C -0.539 4.539 11 H 0.079 0.921 12 C -0.131 4.131 13 N -0.510 5.510 14 Si 0.717 3.283 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.247 4.247 19 C -0.187 4.187 20 N -0.110 5.110 21 N -0.059 5.059 22 N -0.039 5.039 23 C 0.036 3.964 24 C -0.117 4.117 25 C -0.121 4.121 26 C -0.130 4.130 27 C -0.121 4.121 28 C -0.136 4.136 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.235 0.765 35 H 0.090 0.910 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.156 0.844 43 H 0.154 0.846 44 H 0.150 0.850 45 H 0.154 0.846 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.591 -22.698 11.215 26.161 hybrid contribution -0.334 1.315 0.446 1.428 sum -6.925 -21.383 11.661 25.322 Atomic orbital electron populations 1.20476 0.85865 1.04806 1.03112 1.22004 0.96188 0.85898 1.09053 1.20961 0.89205 0.95581 1.06513 1.19948 1.03950 0.89375 0.96749 1.20208 0.77717 0.82674 0.90266 1.90685 1.50645 1.55307 1.46103 1.45923 1.67719 1.10824 1.10638 1.20983 1.00768 0.93846 0.80277 1.19033 0.87677 0.91624 0.98893 1.20330 1.13932 1.23329 0.96302 0.92121 1.24993 0.97152 0.96356 0.94570 1.69973 1.29511 1.42805 1.08705 0.86629 0.80811 0.82260 0.78568 1.20571 1.21205 1.19807 1.23019 0.98802 1.01154 1.01756 1.22492 1.04953 1.01212 0.90047 1.75009 1.20771 1.00211 1.15015 1.78366 1.00459 1.06821 1.20273 1.44487 1.05643 1.05370 1.48393 1.17620 0.97314 0.80033 1.01406 1.21121 1.00120 0.92529 0.97924 1.21127 0.96820 0.95163 0.98981 1.21361 0.94920 1.00095 0.96637 1.21057 1.00137 0.91727 0.99224 1.21138 0.95799 0.97667 0.99023 0.89949 0.88960 0.90572 0.87386 0.86837 0.76524 0.91006 0.94584 0.92824 0.91680 0.90343 0.89826 0.91728 0.84374 0.84607 0.85024 0.84605 0.84554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 8.36 36.01 0.30 -0.47 16 2 C 0.00 -0.03 6.83 -81.71 -0.56 -0.59 16 3 C 0.01 0.23 5.74 -82.77 -0.48 -0.25 16 4 C -0.06 -0.81 5.97 -29.04 -0.17 -0.98 16 5 C 0.51 9.40 7.82 -10.98 -0.09 9.31 16 6 O -0.55 -12.59 16.03 5.56 0.09 -12.50 16 7 N -0.70 -13.23 5.48 -60.30 -0.33 -13.56 16 8 C 0.16 3.71 5.50 -4.05 -0.02 3.69 16 9 C 0.03 0.66 1.38 -155.66 -0.21 0.44 16 10 C -0.50 -12.77 8.63 -34.44 -0.30 -13.07 16 11 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 12 C 0.07 1.96 5.39 -17.82 -0.10 1.86 16 13 N -0.87 -24.46 12.91 55.43 0.72 -23.74 16 14 Si 0.89 20.66 29.55 -169.99 -5.02 15.64 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 C -0.21 -4.24 9.96 -26.69 -0.27 -4.50 16 19 C -0.15 -3.37 9.42 -26.69 -0.25 -3.62 16 20 N -0.24 -4.49 12.39 33.29 0.41 -4.08 16 21 N -0.08 -1.41 12.85 60.35 0.78 -0.63 16 22 N -0.25 -3.57 3.50 -6.77 -0.02 -3.59 16 23 C 0.13 1.41 6.27 -83.57 -0.52 0.89 16 24 C -0.10 -0.96 9.71 -39.41 -0.38 -1.34 16 25 C -0.10 -0.71 10.04 -39.61 -0.40 -1.10 16 26 C -0.11 -0.63 10.04 -39.55 -0.40 -1.02 16 27 C -0.10 -0.60 10.04 -39.61 -0.40 -1.00 16 28 C -0.12 -0.93 8.34 -39.41 -0.33 -1.26 16 29 H 0.08 0.51 7.80 -51.93 -0.41 0.10 16 30 H 0.09 0.87 8.00 -51.93 -0.42 0.46 16 31 H 0.08 0.63 7.00 -51.93 -0.36 0.27 16 32 H 0.11 1.05 8.00 -51.93 -0.42 0.64 16 33 H 0.11 1.46 8.14 -51.93 -0.42 1.03 16 34 H 0.40 6.67 8.37 -40.82 -0.34 6.33 16 35 H 0.07 1.90 8.14 -51.93 -0.42 1.48 16 36 H 0.04 0.80 8.09 -51.93 -0.42 0.38 16 37 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 41 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.14 1.45 8.03 -52.49 -0.42 1.03 16 43 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 44 H 0.13 0.40 8.06 -52.49 -0.42 -0.02 16 45 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 46 H 0.14 0.89 6.19 -52.49 -0.32 0.56 16 LS Contribution 394.10 15.07 5.94 5.94 Total: -1.00 -34.55 394.10 -8.47 -43.02 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -6.46 Total: 6.52 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -4.57 Total: -13.02 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: 1.55 Total: -45.60 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.09 Total: -12.50 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.55 -8.47 -43.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431178694.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.671 kcal (2) G-P(sol) polarization free energy of solvation -34.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds