Wall clock time and date at job start Tue Mar 31 2020 23:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35366 * 126.97430 * 2 1 4 4 C 1.50697 * 126.73277 * 0.04921 * 3 2 1 5 5 C 1.50699 * 109.47234 * 270.28762 * 4 3 2 6 6 O 1.21279 * 119.99828 * 0.02562 * 5 4 3 7 7 N 1.34781 * 119.99972 * 179.97438 * 5 4 3 8 8 C 1.46495 * 119.99684 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47269 * 178.28031 * 8 7 5 10 10 C 1.50704 * 115.54817 * 65.14136 * 9 8 7 11 11 H 1.07999 * 119.99807 * 265.40909 * 10 9 8 12 12 C 1.37873 * 120.00091 * 85.41007 * 10 9 8 13 13 N 1.31513 * 119.99797 * 353.54868 * 12 10 9 14 14 Si 1.86799 * 120.00205 * 173.55573 * 12 10 9 15 15 H 1.48498 * 109.47328 * 89.99282 * 14 12 10 16 16 H 1.48492 * 109.47248 * 209.99649 * 14 12 10 17 17 H 1.48500 * 109.46927 * 329.99492 * 14 12 10 18 18 C 1.53001 * 117.49830 * 279.47538 * 9 8 7 19 19 C 1.52998 * 117.50254 * 210.81471 * 9 8 7 20 20 N 1.33771 * 106.53517 * 180.26786 * 3 2 1 21 21 N 1.28608 * 109.06521 * 359.76028 * 20 3 2 22 22 N 1.28725 * 110.23060 * 0.02562 * 21 20 3 23 23 C 1.40247 * 125.94461 * 179.97438 * 22 21 20 24 24 C 1.38830 * 120.06211 * 325.01775 * 23 22 21 25 25 C 1.38120 * 119.93350 * 179.97438 * 24 23 22 26 26 C 1.38271 * 120.06685 * 0.02562 * 25 24 23 27 27 C 1.38282 * 120.12937 * 0.02562 * 26 25 24 28 28 C 1.38118 * 120.06551 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.47049 * 270.14828 * 1 2 3 30 30 H 1.08998 * 109.47208 * 30.14859 * 1 2 3 31 31 H 1.08998 * 109.47451 * 150.15010 * 1 2 3 32 32 H 1.09002 * 109.47164 * 30.29499 * 4 3 2 33 33 H 1.09005 * 109.47143 * 150.28708 * 4 3 2 34 34 H 0.96999 * 119.99827 * 0.02562 * 7 5 4 35 35 H 1.08999 * 109.47472 * 298.27963 * 8 7 5 36 36 H 1.08997 * 109.47280 * 58.28188 * 8 7 5 37 37 H 0.97001 * 119.99581 * 185.07501 * 13 12 10 38 38 H 1.08998 * 117.49809 * 359.97438 * 18 9 8 39 39 H 1.08997 * 117.49770 * 145.01831 * 18 9 8 40 40 H 1.09001 * 117.49724 * 214.97891 * 19 9 8 41 41 H 1.09003 * 117.49984 * 359.96986 * 19 9 8 42 42 H 1.07998 * 120.02994 * 0.02562 * 24 23 22 43 43 H 1.07997 * 119.96209 * 179.72634 * 25 24 23 44 44 H 1.07997 * 119.93545 * 179.97438 * 26 25 24 45 45 H 1.08000 * 119.96457 * 179.97438 * 27 26 25 46 46 H 1.07998 * 120.03169 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3212 1.0814 0.0000 4 6 1.8984 2.5279 0.0010 5 6 1.7497 3.0088 -1.4194 6 8 1.9653 2.2514 -2.3417 7 7 1.3761 4.2803 -1.6647 8 6 1.2309 4.7476 -3.0455 9 6 0.7598 6.2033 -3.0445 10 6 1.7313 7.2004 -2.4673 11 1 1.6546 7.4906 -1.4299 12 6 2.7178 7.7421 -3.2637 13 7 2.8922 7.2970 -4.4889 14 14 3.8069 9.1081 -2.6024 15 1 5.0032 8.5162 -1.9514 16 1 4.2354 9.9852 -3.7214 17 1 3.0479 9.9090 -1.6085 18 6 -0.7321 6.4628 -2.8263 19 6 -0.1147 6.6636 -4.2125 20 7 3.5747 0.6143 -0.0060 21 7 3.5439 -0.6714 -0.0044 22 7 2.3257 -1.0874 0.0018 23 6 1.9136 -2.4280 0.0048 24 6 2.6469 -3.3825 -0.6870 25 6 2.2390 -4.7021 -0.6819 26 6 1.1012 -5.0727 0.0109 27 6 0.3682 -4.1240 0.7000 28 6 0.7712 -2.8030 0.6985 29 1 -0.3633 0.0027 1.0277 30 1 -0.3633 0.8886 -0.5161 31 1 -0.3634 -0.8913 -0.5115 32 1 0.9452 2.6274 0.5202 33 1 2.6536 3.1268 0.5102 34 1 1.2033 4.8860 -0.9270 35 1 2.1914 4.6770 -3.5559 36 1 0.4980 4.1290 -3.5634 37 1 3.6320 7.6254 -5.0234 38 1 -1.3781 5.5964 -2.6838 39 1 -1.0110 7.3549 -2.2656 40 1 0.0123 7.6879 -4.5632 41 1 -0.3541 5.9296 -4.9819 42 1 3.5359 -3.0936 -1.2280 43 1 2.8066 -5.4442 -1.2235 44 1 0.7839 -6.1051 0.0131 45 1 -0.5203 -4.4164 1.2399 46 1 0.1986 -2.0626 1.2373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431178694.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:45 Heat of formation + Delta-G solvation = 89.342001 kcal Electronic energy + Delta-G solvation = -28351.079910 eV Core-core repulsion = 24435.760388 eV Total energy + Delta-G solvation = -3915.319522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.56194 -40.63535 -40.21455 -38.45868 -35.85407 -34.91500 -34.80577 -33.95300 -32.19862 -31.41462 -30.34835 -28.44634 -27.67998 -26.70946 -25.06294 -23.93225 -22.96596 -22.35381 -21.88410 -21.33473 -20.90048 -19.10756 -18.41293 -17.94784 -17.37988 -17.35616 -16.79015 -16.55748 -16.32693 -15.88749 -15.71174 -15.45025 -15.13856 -14.77238 -14.71663 -14.52190 -14.24757 -14.05249 -13.94836 -13.86519 -13.58429 -13.44818 -13.04434 -12.89718 -12.83666 -12.73898 -12.57049 -12.33321 -12.30497 -12.00995 -11.94389 -11.66822 -11.48161 -10.96542 -10.82909 -10.44899 -10.12399 -10.09400 -9.96535 -9.80058 -9.73531 -8.09184 -6.21839 -0.34316 0.24128 0.77426 1.22831 1.32010 1.42737 1.45108 1.53152 1.75617 2.42167 2.50480 2.61410 3.19702 3.20132 3.52990 3.55205 3.68802 3.74996 3.80175 4.05483 4.06896 4.14737 4.28292 4.32025 4.34129 4.47556 4.54217 4.58407 4.61706 4.67862 4.73414 4.76823 4.79544 4.86967 4.93416 5.03259 5.05407 5.12173 5.27216 5.29114 5.30298 5.41781 5.60756 5.60988 5.64400 5.71268 5.79945 5.92389 6.38100 6.80437 6.87522 7.34042 7.43383 7.48142 8.98308 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021340 B = 0.002213 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.804875 B =12649.815691 C =13169.165695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.006 3.994 3 C -0.015 4.015 4 C -0.045 4.045 5 C 0.507 3.493 6 O -0.598 6.598 7 N -0.694 5.694 8 C 0.181 3.819 9 C 0.004 3.996 10 C -0.501 4.501 11 H 0.068 0.932 12 C 0.021 3.979 13 N -0.911 5.911 14 Si 0.948 3.052 15 H -0.282 1.282 16 H -0.292 1.292 17 H -0.259 1.259 18 C -0.169 4.169 19 C -0.164 4.164 20 N -0.291 5.291 21 N -0.120 5.120 22 N -0.244 5.244 23 C 0.083 3.917 24 C -0.121 4.121 25 C -0.104 4.104 26 C -0.100 4.100 27 C -0.095 4.095 28 C -0.114 4.114 29 H 0.122 0.878 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.159 0.841 33 H 0.124 0.876 34 H 0.414 0.586 35 H 0.020 0.980 36 H 0.036 0.964 37 H 0.257 0.743 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.114 0.886 43 H 0.156 0.844 44 H 0.167 0.833 45 H 0.173 0.827 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.699 -23.487 14.949 30.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 C -0.154 4.154 4 C -0.086 4.086 5 C 0.294 3.706 6 O -0.480 6.480 7 N -0.344 5.344 8 C 0.057 3.943 9 C 0.004 3.996 10 C -0.539 4.539 11 H 0.086 0.914 12 C -0.180 4.180 13 N -0.549 5.549 14 Si 0.775 3.225 15 H -0.209 1.209 16 H -0.218 1.218 17 H -0.183 1.183 18 C -0.206 4.206 19 C -0.203 4.203 20 N -0.156 5.156 21 N -0.096 5.096 22 N -0.032 5.032 23 C -0.007 4.007 24 C -0.142 4.142 25 C -0.122 4.122 26 C -0.118 4.118 27 C -0.114 4.114 28 C -0.134 4.134 29 H 0.140 0.860 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.177 0.823 33 H 0.142 0.858 34 H 0.251 0.749 35 H 0.039 0.961 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.132 0.868 43 H 0.174 0.826 44 H 0.185 0.815 45 H 0.191 0.809 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.935 -24.289 14.101 29.790 hybrid contribution 0.621 1.615 -0.444 1.786 sum -9.313 -22.674 13.656 28.059 Atomic orbital electron populations 1.20716 0.82444 1.05280 1.05736 1.22722 0.98070 0.85051 1.06636 1.21381 0.88970 0.97017 1.07989 1.19997 1.06845 0.88369 0.93417 1.21015 0.75918 0.81778 0.91856 1.90665 1.52533 1.56547 1.48243 1.45771 1.67766 1.11375 1.09491 1.20509 0.97930 0.93918 0.81985 1.19043 0.89336 0.91223 1.00038 1.20708 1.13751 1.22910 0.96516 0.91351 1.25738 0.98865 0.98463 0.94885 1.70114 1.30230 1.44456 1.10056 0.85701 0.79141 0.79788 0.77904 1.20867 1.21811 1.18326 1.23012 0.96412 1.02315 0.98851 1.22436 1.06388 1.00101 0.91340 1.74916 1.22831 1.01130 1.16731 1.78250 1.02376 1.06574 1.22408 1.44765 1.04947 1.06831 1.46661 1.18123 0.99452 0.78841 1.04239 1.21165 0.99967 0.94101 0.98923 1.21416 0.97643 0.94034 0.99145 1.21838 0.93505 1.01849 0.94610 1.21540 1.00858 0.90540 0.98422 1.21418 0.94485 0.99219 0.98268 0.86006 0.88965 0.89554 0.82342 0.85767 0.74935 0.96125 0.94561 0.93413 0.88844 0.89348 0.91977 0.91367 0.86759 0.82635 0.81518 0.80932 0.82915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 8.36 71.24 0.60 -0.69 16 2 C 0.01 0.15 6.83 41.23 0.28 0.43 16 3 C -0.02 -0.49 5.74 41.60 0.24 -0.25 16 4 C -0.05 -1.19 5.97 29.10 0.17 -1.02 16 5 C 0.51 18.75 7.82 87.66 0.69 19.43 16 6 O -0.60 -28.36 16.03 -3.03 -0.05 -28.41 16 7 N -0.69 -25.73 5.48 -463.07 -2.54 -28.27 16 8 C 0.18 8.31 5.50 86.38 0.48 8.78 16 9 C 0.00 0.20 1.38 -52.93 -0.07 0.13 16 10 C -0.50 -25.34 8.63 25.60 0.22 -25.12 16 11 H 0.07 3.28 7.82 -2.91 -0.02 3.26 16 12 C 0.02 1.12 5.39 84.65 0.46 1.57 16 13 N -0.91 -52.68 12.91 21.45 0.28 -52.41 16 14 Si 0.95 42.82 29.55 68.60 2.03 44.85 16 15 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 16 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 17 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 18 C -0.17 -6.39 9.96 30.62 0.30 -6.08 16 19 C -0.16 -7.42 9.42 30.62 0.29 -7.13 16 20 N -0.29 -11.31 12.39 -48.59 -0.60 -11.91 16 21 N -0.12 -4.37 12.85 37.02 0.48 -3.90 16 22 N -0.24 -7.12 3.50 -175.34 -0.61 -7.73 16 23 C 0.08 1.83 6.27 38.07 0.24 2.07 16 24 C -0.12 -2.51 9.71 22.38 0.22 -2.29 16 25 C -0.10 -1.28 10.04 22.25 0.22 -1.06 16 26 C -0.10 -0.75 10.04 22.29 0.22 -0.52 16 27 C -0.10 -0.72 10.04 22.25 0.22 -0.50 16 28 C -0.11 -1.53 8.34 22.38 0.19 -1.34 16 29 H 0.12 0.92 7.80 -2.39 -0.02 0.91 16 30 H 0.09 1.47 8.00 -2.39 -0.02 1.45 16 31 H 0.09 1.17 7.00 -2.39 -0.02 1.16 16 32 H 0.16 2.49 8.00 -2.39 -0.02 2.47 16 33 H 0.12 3.03 8.14 -2.38 -0.02 3.01 16 34 H 0.41 13.01 8.37 -92.71 -0.78 12.24 16 35 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.04 1.64 8.09 -2.39 -0.02 1.62 16 37 H 0.26 14.45 8.32 -92.71 -0.77 13.68 16 38 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 39 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 40 H 0.06 3.04 8.14 -2.39 -0.02 3.02 16 41 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 42 H 0.11 2.77 8.03 -2.91 -0.02 2.74 16 43 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16 44 H 0.17 0.12 8.06 -2.91 -0.02 0.10 16 45 H 0.17 0.07 8.06 -2.91 -0.02 0.05 16 46 H 0.15 1.44 6.19 -2.91 -0.02 1.42 16 Total: -1.00 -82.00 394.10 4.17 -77.83 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.23 Total: 23.52 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 4.96 Total: -13.58 kcal Atomic # 7 Polarization: -101.22 SS G_CDS: -3.00 Total: -104.22 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.05 Total: -28.41 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -82.00 4.17 -77.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431178694.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.175 kcal (2) G-P(sol) polarization free energy of solvation -82.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds