Wall clock time and date at job start Tue Mar 31 2020 22:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38279 * 119.93043 * 2 1 4 4 C 1.38126 * 120.06491 * 179.97438 * 3 2 1 5 5 C 1.38822 * 119.93307 * 359.97438 * 4 3 2 6 6 N 1.40231 * 120.06507 * 180.02562 * 5 4 3 7 7 C 1.36175 * 126.59154 * 310.02892 * 6 5 4 8 8 N 1.30837 * 108.65186 * 179.97438 * 7 6 5 9 9 C 1.33401 * 109.24527 * 359.97438 * 8 7 6 10 10 C 1.35246 * 108.08560 * 0.06340 * 9 8 7 11 11 C 1.50708 * 123.52060 * 179.76154 * 10 9 8 12 12 C 1.53557 * 107.83021 * 344.33941 * 11 10 9 13 13 N 1.46949 * 109.56761 * 48.89443 * 12 11 10 14 14 C 1.46892 * 111.00421 * 164.36400 * 13 12 11 15 15 C 1.50701 * 109.47199 * 190.65792 * 14 13 12 16 16 O 1.21290 * 120.00018 * 0.02562 * 15 14 13 17 17 N 1.34783 * 120.00017 * 179.97438 * 15 14 13 18 18 C 1.37093 * 119.99761 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00304 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99711 * 180.02562 * 18 17 15 21 21 N 1.31409 * 120.00463 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00044 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46964 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47020 * 119.99680 * 22 20 18 25 25 H 1.48493 * 109.47362 * 239.99851 * 22 20 18 26 26 C 1.47275 * 111.50631 * 288.69211 * 13 12 11 27 27 C 1.38816 * 119.86954 * 0.28147 * 5 4 3 28 28 C 1.38126 * 119.93723 * 359.44840 * 27 5 4 29 29 H 1.08998 * 109.47443 * 90.00288 * 1 2 3 30 30 H 1.09008 * 109.46701 * 209.99953 * 1 2 3 31 31 H 1.08994 * 109.47457 * 329.99102 * 1 2 3 32 32 H 1.07995 * 119.96863 * 359.95759 * 3 2 1 33 33 H 1.08002 * 120.03204 * 179.97438 * 4 3 2 34 34 H 1.07999 * 125.67332 * 359.66546 * 7 6 5 35 35 H 1.08992 * 109.78732 * 103.93279 * 11 10 9 36 36 H 1.08995 * 109.79012 * 224.76984 * 11 10 9 37 37 H 1.08999 * 109.46315 * 288.86159 * 12 11 10 38 38 H 1.08998 * 109.45127 * 168.92056 * 12 11 10 39 39 H 1.09003 * 109.47324 * 310.65547 * 14 13 12 40 40 H 1.08999 * 109.47416 * 70.65970 * 14 13 12 41 41 H 0.97001 * 119.99974 * 0.02562 * 17 15 14 42 42 H 0.96993 * 120.00563 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.69056 * 291.70277 * 26 13 12 44 44 H 1.09003 * 109.69413 * 171.11128 * 26 13 12 45 45 H 1.08009 * 120.03264 * 179.70311 * 27 5 4 46 46 H 1.07997 * 119.97074 * 180.27916 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5782 1.2016 0.0005 5 6 4.2737 0.0002 0.0016 6 7 5.6760 0.0003 0.0027 7 6 6.4884 0.7031 -0.8342 8 7 7.7329 0.4446 -0.5242 9 6 7.7626 -0.4120 0.4980 10 6 6.4866 -0.7018 0.8401 11 6 6.1179 -1.6450 1.9563 12 6 7.3678 -2.4624 2.3134 13 7 8.5133 -1.5588 2.4887 14 6 9.6176 -2.2367 3.1805 15 6 10.6611 -1.2233 3.5744 16 8 10.5004 -0.0515 3.3057 17 7 11.7725 -1.6189 4.2263 18 6 12.7220 -0.6971 4.5841 19 1 12.5793 0.3462 4.3442 20 6 13.8681 -1.1050 5.2557 21 7 14.0420 -2.3745 5.5473 22 14 15.1623 0.1509 5.7427 23 1 14.7315 1.5019 5.3018 24 1 15.3297 0.1424 7.2182 25 1 16.4539 -0.1930 5.0960 26 6 8.9609 -0.9986 1.2023 27 6 3.5783 -1.2012 -0.0038 28 6 2.1971 -1.1982 0.0014 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8901 0.5139 31 1 -0.3634 0.8898 0.5139 32 1 1.6553 2.1327 -0.0007 33 1 4.1165 2.1379 0.0001 34 1 6.1600 1.3605 -1.6257 35 1 5.7877 -1.0766 2.8257 36 1 5.3220 -2.3130 1.6272 37 1 7.5817 -3.1682 1.5108 38 1 7.1916 -3.0091 3.2397 39 1 9.2372 -2.7323 4.0737 40 1 10.0629 -2.9770 2.5159 41 1 11.9009 -2.5560 4.4415 42 1 14.8418 -2.6592 6.0163 43 1 9.3970 -1.7879 0.5899 44 1 9.7014 -0.2185 1.3791 45 1 4.1168 -2.1375 -0.0078 46 1 1.6556 -2.1326 0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488037832.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:20 Heat of formation + Delta-G solvation = 66.206555 kcal Electronic energy + Delta-G solvation = -28415.924672 eV Core-core repulsion = 24499.601921 eV Total energy + Delta-G solvation = -3916.322751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.48009 -39.69427 -38.61437 -36.87663 -34.87759 -33.86216 -32.32709 -31.55218 -31.38388 -31.06508 -29.32634 -27.46358 -26.66478 -24.70283 -23.66148 -23.35214 -22.79080 -21.84301 -20.60834 -19.14725 -18.93313 -18.02800 -17.77446 -16.26651 -16.06189 -15.92986 -15.68673 -15.06094 -14.84419 -14.60690 -14.51536 -14.27071 -14.04972 -13.90888 -13.81088 -13.75244 -13.36441 -13.32799 -12.74637 -12.70906 -12.53399 -12.21532 -11.97842 -11.93268 -11.58859 -11.49924 -11.39302 -11.26483 -11.11241 -10.92038 -10.29005 -10.18195 -10.16250 -9.76714 -9.49264 -9.42330 -8.77607 -8.40583 -8.08426 -7.91156 -7.72315 -6.35840 -3.75994 0.58872 0.85227 2.04827 2.58179 3.16457 3.21067 3.21975 3.31370 3.39224 3.90839 3.98619 4.26716 4.30758 4.36148 4.41778 4.51970 4.61013 4.76251 4.85160 4.92765 5.10063 5.11435 5.13749 5.17956 5.23036 5.31130 5.37550 5.45663 5.49054 5.55224 5.61731 5.74368 5.77738 5.80038 5.80913 5.93487 5.96601 6.06801 6.08396 6.29460 6.34197 6.38663 6.45442 6.87780 7.23281 7.34690 7.40412 7.61800 8.13218 8.14124 8.68796 9.25037 9.61209 10.13601 10.82111 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026714 B = 0.002052 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.886352 B =13644.749248 C =13990.586063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.085 4.085 3 C -0.103 4.103 4 C -0.111 4.111 5 C 0.122 3.878 6 N -0.411 5.411 7 C 0.175 3.825 8 N -0.469 5.469 9 C 0.023 3.977 10 C -0.017 4.017 11 C -0.033 4.033 12 C 0.060 3.940 13 N -0.517 5.517 14 C 0.049 3.951 15 C 0.444 3.556 16 O -0.573 6.573 17 N -0.566 5.566 18 C -0.295 4.295 19 H 0.104 0.896 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.928 3.072 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.138 3.862 27 C -0.111 4.111 28 C -0.104 4.104 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.206 0.794 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.037 0.963 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.050 0.950 41 H 0.392 0.608 42 H 0.270 0.730 43 H 0.041 0.959 44 H 0.121 0.879 45 H 0.130 0.870 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.239 -1.446 -11.585 29.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.122 4.122 4 C -0.131 4.131 5 C 0.030 3.970 6 N -0.092 5.092 7 C -0.104 4.104 8 N -0.186 5.186 9 C -0.106 4.106 10 C -0.130 4.130 11 C -0.072 4.072 12 C -0.069 4.069 13 N -0.241 5.241 14 C -0.082 4.082 15 C 0.229 3.771 16 O -0.457 6.457 17 N -0.203 5.203 18 C -0.425 4.425 19 H 0.122 0.878 20 C -0.180 4.180 21 N -0.545 5.545 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C 0.010 3.990 27 C -0.131 4.131 28 C -0.122 4.122 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.222 0.778 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.055 0.945 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.068 0.932 41 H 0.225 0.775 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.139 0.861 45 H 0.148 0.852 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -26.712 -0.020 -11.768 29.190 hybrid contribution 0.358 -0.897 0.237 0.995 sum -26.354 -0.918 -11.531 28.781 Atomic orbital electron populations 1.20821 0.90660 1.03169 1.02600 1.20053 0.96547 0.93009 0.98921 1.20947 0.93083 0.98113 1.00031 1.21118 0.94569 0.96850 1.00526 1.17729 0.80736 0.94569 1.03918 1.42607 1.03845 1.35908 1.26797 1.25278 0.84581 1.01606 0.98953 1.69875 1.18867 1.15119 1.14718 1.20521 0.93443 0.99913 0.96694 1.20952 0.90608 1.02995 0.98422 1.20198 0.97627 0.95094 0.94235 1.22114 0.90595 0.93367 1.00858 1.61450 1.06549 1.34731 1.21410 1.21864 0.91979 0.95430 0.98960 1.19749 0.83697 0.89445 0.84229 1.90511 1.78380 1.18336 1.58473 1.41859 1.17126 1.10682 1.50596 1.19754 0.97338 0.92042 1.33358 0.87848 1.25244 0.98610 0.96793 0.97388 1.69616 1.28807 1.14608 1.41461 0.85814 0.80017 0.80571 0.78039 1.19219 1.20837 1.20824 1.20565 0.93112 0.99101 0.86260 1.21111 0.94505 0.96915 1.00547 1.20943 0.93074 0.98105 1.00104 0.90873 0.91251 0.91247 0.85051 0.85010 0.77767 0.89763 0.90907 0.94487 0.89720 0.88994 0.93175 0.77519 0.92021 0.94082 0.86113 0.85185 0.85092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.47 10.01 36.01 0.36 -0.11 16 2 C -0.08 -0.55 5.88 -104.59 -0.62 -1.16 16 3 C -0.10 -0.71 9.69 -39.61 -0.38 -1.10 16 4 C -0.11 -0.97 9.69 -39.41 -0.38 -1.36 16 5 C 0.12 1.27 5.93 -83.58 -0.50 0.77 16 6 N -0.41 -5.40 2.87 -57.85 -0.17 -5.56 16 7 C 0.17 2.41 12.33 -89.05 -1.10 1.31 16 8 N -0.47 -8.29 11.24 -10.51 -0.12 -8.41 16 9 C 0.02 0.42 7.08 -82.90 -0.59 -0.17 16 10 C -0.02 -0.26 6.62 -81.78 -0.54 -0.80 16 11 C -0.03 -0.41 6.10 -27.59 -0.17 -0.58 16 12 C 0.06 0.78 5.54 -3.51 -0.02 0.76 16 13 N -0.52 -9.12 4.35 -236.69 -1.03 -10.15 16 14 C 0.05 0.88 5.45 -4.98 -0.03 0.85 16 15 C 0.44 10.65 7.54 -10.98 -0.08 10.57 16 16 O -0.57 -15.91 13.89 5.55 0.08 -15.83 16 17 N -0.57 -14.49 5.29 -10.96 -0.06 -14.55 16 18 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 19 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 21 N -0.90 -24.84 13.05 55.50 0.72 -24.11 16 22 Si 0.93 21.46 29.55 -169.99 -5.02 16.44 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 C 0.14 2.61 5.41 -4.69 -0.03 2.58 16 27 C -0.11 -0.97 8.93 -39.41 -0.35 -1.32 16 28 C -0.10 -0.71 9.69 -39.61 -0.38 -1.10 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.23 8.08 -51.92 -0.42 -0.19 16 31 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 32 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.21 1.97 8.06 -52.49 -0.42 1.55 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 0.71 6.46 -51.93 -0.34 0.37 16 37 H 0.04 0.46 8.07 -51.93 -0.42 0.04 16 38 H 0.08 0.94 7.81 -51.93 -0.41 0.53 16 39 H 0.09 1.45 7.85 -51.93 -0.41 1.04 16 40 H 0.05 0.82 8.10 -51.93 -0.42 0.40 16 41 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 42 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.04 0.73 8.11 -51.93 -0.42 0.31 16 44 H 0.12 2.76 6.00 -51.93 -0.31 2.45 16 45 H 0.13 1.08 6.99 -52.48 -0.37 0.72 16 46 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 LS Contribution 380.05 15.07 5.73 5.73 Total: -1.00 -34.78 380.05 -11.20 -45.99 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -6.30 Total: 9.33 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -5.04 Total: 1.13 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: -0.65 Total: -62.78 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.08 Total: -15.83 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.78 -11.20 -45.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488037832.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.192 kcal (2) G-P(sol) polarization free energy of solvation -34.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds