Wall clock time and date at job start Tue Mar 31 2020 22:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38279 * 119.93043 * 2 1 4 4 C 1.38126 * 120.06491 * 179.97438 * 3 2 1 5 5 C 1.38822 * 119.93307 * 359.97438 * 4 3 2 6 6 N 1.40231 * 120.06507 * 180.02562 * 5 4 3 7 7 C 1.36175 * 126.59154 * 310.02892 * 6 5 4 8 8 N 1.30837 * 108.65186 * 179.97438 * 7 6 5 9 9 C 1.33401 * 109.24527 * 359.97438 * 8 7 6 10 10 C 1.35246 * 108.08560 * 0.06340 * 9 8 7 11 11 C 1.50708 * 123.52060 * 179.76154 * 10 9 8 12 12 C 1.53557 * 107.83021 * 344.33941 * 11 10 9 13 13 N 1.46949 * 109.56761 * 48.89443 * 12 11 10 14 14 C 1.46892 * 111.00421 * 164.36400 * 13 12 11 15 15 C 1.50701 * 109.47199 * 190.65792 * 14 13 12 16 16 O 1.21290 * 120.00018 * 0.02562 * 15 14 13 17 17 N 1.34783 * 120.00017 * 179.97438 * 15 14 13 18 18 C 1.37093 * 119.99761 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00304 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99711 * 180.02562 * 18 17 15 21 21 N 1.31409 * 120.00463 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00044 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46964 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47020 * 119.99680 * 22 20 18 25 25 H 1.48493 * 109.47362 * 239.99851 * 22 20 18 26 26 C 1.47275 * 111.50631 * 288.69211 * 13 12 11 27 27 C 1.38816 * 119.86954 * 0.28147 * 5 4 3 28 28 C 1.38126 * 119.93723 * 359.44840 * 27 5 4 29 29 H 1.08998 * 109.47443 * 90.00288 * 1 2 3 30 30 H 1.09008 * 109.46701 * 209.99953 * 1 2 3 31 31 H 1.08994 * 109.47457 * 329.99102 * 1 2 3 32 32 H 1.07995 * 119.96863 * 359.95759 * 3 2 1 33 33 H 1.08002 * 120.03204 * 179.97438 * 4 3 2 34 34 H 1.07999 * 125.67332 * 359.66546 * 7 6 5 35 35 H 1.08992 * 109.78732 * 103.93279 * 11 10 9 36 36 H 1.08995 * 109.79012 * 224.76984 * 11 10 9 37 37 H 1.08999 * 109.46315 * 288.86159 * 12 11 10 38 38 H 1.08998 * 109.45127 * 168.92056 * 12 11 10 39 39 H 1.09003 * 109.47324 * 310.65547 * 14 13 12 40 40 H 1.08999 * 109.47416 * 70.65970 * 14 13 12 41 41 H 0.97001 * 119.99974 * 0.02562 * 17 15 14 42 42 H 0.96993 * 120.00563 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.69056 * 291.70277 * 26 13 12 44 44 H 1.09003 * 109.69413 * 171.11128 * 26 13 12 45 45 H 1.08009 * 120.03264 * 179.70311 * 27 5 4 46 46 H 1.07997 * 119.97074 * 180.27916 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5782 1.2016 0.0005 5 6 4.2737 0.0002 0.0016 6 7 5.6760 0.0003 0.0027 7 6 6.4884 0.7031 -0.8342 8 7 7.7329 0.4446 -0.5242 9 6 7.7626 -0.4120 0.4980 10 6 6.4866 -0.7018 0.8401 11 6 6.1179 -1.6450 1.9563 12 6 7.3678 -2.4624 2.3134 13 7 8.5133 -1.5588 2.4887 14 6 9.6176 -2.2367 3.1805 15 6 10.6611 -1.2233 3.5744 16 8 10.5004 -0.0515 3.3057 17 7 11.7725 -1.6189 4.2263 18 6 12.7220 -0.6971 4.5841 19 1 12.5793 0.3462 4.3442 20 6 13.8681 -1.1050 5.2557 21 7 14.0420 -2.3745 5.5473 22 14 15.1623 0.1509 5.7427 23 1 14.7315 1.5019 5.3018 24 1 15.3297 0.1424 7.2182 25 1 16.4539 -0.1930 5.0960 26 6 8.9609 -0.9986 1.2023 27 6 3.5783 -1.2012 -0.0038 28 6 2.1971 -1.1982 0.0014 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8901 0.5139 31 1 -0.3634 0.8898 0.5139 32 1 1.6553 2.1327 -0.0007 33 1 4.1165 2.1379 0.0001 34 1 6.1600 1.3605 -1.6257 35 1 5.7877 -1.0766 2.8257 36 1 5.3220 -2.3130 1.6272 37 1 7.5817 -3.1682 1.5108 38 1 7.1916 -3.0091 3.2397 39 1 9.2372 -2.7323 4.0737 40 1 10.0629 -2.9770 2.5159 41 1 11.9009 -2.5560 4.4415 42 1 14.8418 -2.6592 6.0163 43 1 9.3970 -1.7879 0.5899 44 1 9.7014 -0.2185 1.3791 45 1 4.1168 -2.1375 -0.0078 46 1 1.6556 -2.1326 0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488037832.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:19 Heat of formation + Delta-G solvation = 44.444167 kcal Electronic energy + Delta-G solvation = -28416.868360 eV Core-core repulsion = 24499.601921 eV Total energy + Delta-G solvation = -3917.266439 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.54790 -40.49568 -40.17502 -38.36487 -35.90993 -35.71812 -33.50238 -33.18414 -32.22436 -32.02264 -30.53508 -28.83631 -27.45787 -26.44273 -24.98128 -24.02932 -23.70088 -22.86111 -21.49442 -20.98727 -20.08494 -19.82619 -18.94731 -17.73437 -17.17199 -16.82902 -16.65567 -16.53206 -16.14054 -15.90284 -15.68180 -15.46609 -15.31301 -15.08251 -14.72760 -14.62233 -14.55753 -14.46757 -14.06936 -13.71875 -13.48256 -13.23442 -13.05875 -13.01499 -12.96384 -12.85721 -12.56583 -12.40409 -12.35191 -12.27122 -12.12126 -12.03832 -11.47488 -11.18372 -10.91226 -10.27289 -10.05732 -9.97903 -9.49510 -9.32267 -9.06530 -8.44997 -5.92893 -0.07177 0.29363 1.02892 1.36540 1.41316 1.55697 1.65361 1.97583 2.08211 2.29132 2.60385 2.65787 3.20981 3.27582 3.55221 3.64993 3.76057 3.84811 3.88539 3.96250 4.14576 4.23461 4.26075 4.31277 4.34709 4.36329 4.45380 4.52909 4.59676 4.62856 4.69198 4.74995 4.80987 4.88555 4.94331 5.00080 5.01666 5.10348 5.18225 5.28847 5.40357 5.42906 5.56934 5.63244 5.81778 5.89983 6.02329 6.17662 6.35162 6.63949 6.99990 7.15996 7.59426 8.16836 8.72644 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026714 B = 0.002052 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.886352 B =13644.749248 C =13990.586063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.080 4.080 3 C -0.105 4.105 4 C -0.118 4.118 5 C 0.088 3.912 6 N -0.403 5.403 7 C 0.180 3.820 8 N -0.517 5.517 9 C -0.022 4.022 10 C -0.010 4.010 11 C -0.028 4.028 12 C 0.059 3.941 13 N -0.535 5.535 14 C 0.061 3.939 15 C 0.439 3.561 16 O -0.617 6.617 17 N -0.574 5.574 18 C -0.330 4.330 19 H 0.075 0.925 20 C -0.013 4.013 21 N -0.919 5.919 22 Si 0.991 3.009 23 H -0.277 1.277 24 H -0.269 1.269 25 H -0.270 1.270 26 C 0.148 3.852 27 C -0.115 4.115 28 C -0.103 4.103 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.153 0.847 33 H 0.130 0.870 34 H 0.239 0.761 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.049 0.951 38 H 0.114 0.886 39 H 0.125 0.875 40 H 0.072 0.928 41 H 0.397 0.603 42 H 0.277 0.723 43 H 0.041 0.959 44 H 0.068 0.932 45 H 0.133 0.867 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.433 -2.777 -11.444 32.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.080 4.080 3 C -0.124 4.124 4 C -0.138 4.138 5 C -0.002 4.002 6 N -0.082 5.082 7 C -0.100 4.100 8 N -0.235 5.235 9 C -0.150 4.150 10 C -0.124 4.124 11 C -0.067 4.067 12 C -0.069 4.069 13 N -0.260 5.260 14 C -0.069 4.069 15 C 0.226 3.774 16 O -0.503 6.503 17 N -0.211 5.211 18 C -0.460 4.460 19 H 0.093 0.907 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.815 3.185 23 H -0.202 1.202 24 H -0.194 1.194 25 H -0.196 1.196 26 C 0.019 3.981 27 C -0.134 4.134 28 C -0.122 4.122 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.171 0.829 33 H 0.148 0.852 34 H 0.255 0.745 35 H 0.099 0.901 36 H 0.126 0.874 37 H 0.068 0.932 38 H 0.132 0.868 39 H 0.142 0.858 40 H 0.090 0.910 41 H 0.231 0.769 42 H 0.087 0.913 43 H 0.059 0.941 44 H 0.086 0.914 45 H 0.151 0.849 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -29.946 -1.389 -11.625 32.153 hybrid contribution 1.166 -0.441 0.128 1.253 sum -28.781 -1.829 -11.497 31.046 Atomic orbital electron populations 1.20894 0.88652 1.04150 1.03534 1.20435 0.98018 0.92623 0.96937 1.21235 0.92343 0.99486 0.99296 1.21223 0.95481 0.96321 1.00747 1.18002 0.79185 0.96018 1.06967 1.42698 1.05058 1.34737 1.25721 1.25878 0.83786 1.01227 0.99131 1.69778 1.21346 1.16514 1.15856 1.20464 0.94218 1.02046 0.98277 1.21260 0.89975 1.02726 0.98480 1.20306 0.98203 0.95040 0.93117 1.22291 0.88734 0.92968 1.02859 1.61369 1.07371 1.36519 1.20739 1.21771 0.90761 0.93638 1.00761 1.20873 0.84020 0.90100 0.82369 1.90495 1.79328 1.20877 1.59589 1.41904 1.17464 1.10497 1.51282 1.19655 0.99279 0.91555 1.35520 0.90710 1.25989 0.99815 0.98769 0.96654 1.69666 1.29514 1.15608 1.41272 0.84904 0.77619 0.77735 0.78265 1.20170 1.19418 1.19571 1.20189 0.92951 0.97742 0.87212 1.21217 0.95355 0.96305 1.00543 1.21255 0.92353 0.99439 0.99118 0.89818 0.90203 0.90439 0.82939 0.85173 0.74493 0.90101 0.87448 0.93226 0.86785 0.85755 0.91013 0.76878 0.91332 0.94121 0.91398 0.84924 0.82616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.49 10.01 71.24 0.71 0.23 16 2 C -0.08 -0.77 5.88 -19.85 -0.12 -0.88 16 3 C -0.11 -1.18 9.69 22.25 0.22 -0.97 16 4 C -0.12 -1.90 9.69 22.38 0.22 -1.69 16 5 C 0.09 1.71 5.93 38.07 0.23 1.94 16 6 N -0.40 -10.43 2.87 -336.93 -0.97 -11.40 16 7 C 0.18 5.02 12.33 179.80 2.22 7.23 16 8 N -0.52 -19.29 11.24 -187.15 -2.10 -21.40 16 9 C -0.02 -0.81 7.08 41.68 0.30 -0.52 16 10 C -0.01 -0.29 6.62 41.22 0.27 -0.02 16 11 C -0.03 -0.65 6.10 30.04 0.18 -0.47 16 12 C 0.06 1.43 5.54 86.48 0.48 1.91 16 13 N -0.53 -18.94 4.35 -902.76 -3.92 -22.87 16 14 C 0.06 2.20 5.45 85.56 0.47 2.66 16 15 C 0.44 21.89 7.54 87.66 0.66 22.55 16 16 O -0.62 -36.41 13.89 -3.06 -0.04 -36.45 16 17 N -0.57 -30.35 5.29 -306.98 -1.62 -31.97 16 18 C -0.33 -19.43 9.68 84.04 0.81 -18.61 16 19 H 0.07 4.75 7.16 -2.91 -0.02 4.72 16 20 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 21 N -0.92 -50.49 13.05 21.66 0.28 -50.21 16 22 Si 0.99 44.45 29.55 68.60 2.03 46.48 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 C 0.15 5.95 5.41 85.54 0.46 6.41 16 27 C -0.11 -1.74 8.93 22.38 0.20 -1.54 16 28 C -0.10 -1.08 9.69 22.25 0.22 -0.86 16 29 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.08 0.21 8.08 -2.38 -0.02 0.19 16 31 H 0.08 0.24 8.08 -2.39 -0.02 0.22 16 32 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 33 H 0.13 2.04 8.06 -2.91 -0.02 2.01 16 34 H 0.24 4.49 8.06 -2.91 -0.02 4.47 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.11 1.73 6.46 -2.39 -0.02 1.71 16 37 H 0.05 1.11 8.07 -2.39 -0.02 1.09 16 38 H 0.11 2.11 7.81 -2.39 -0.02 2.09 16 39 H 0.12 3.64 7.85 -2.39 -0.02 3.63 16 40 H 0.07 2.28 8.10 -2.39 -0.02 2.26 16 41 H 0.40 19.69 7.90 -92.71 -0.73 18.96 16 42 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 43 H 0.04 1.55 8.11 -2.39 -0.02 1.53 16 44 H 0.07 3.42 6.00 -2.39 -0.01 3.40 16 45 H 0.13 1.86 6.99 -2.91 -0.02 1.84 16 46 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 Total: -1.00 -80.77 380.05 1.92 -78.85 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 0.28 Total: 31.82 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 7.99 Total: 17.14 kcal Atomic # 7 Polarization: -129.51 SS G_CDS: -8.33 Total: -137.84 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -0.04 Total: -36.45 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -80.77 1.92 -78.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488037832.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.296 kcal (2) G-P(sol) polarization free energy of solvation -80.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds