Wall clock time and date at job start Tue Mar 31 2020 23:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38811 * 125.85978 * 2 1 4 4 C 1.46246 * 126.54564 * 0.02562 * 3 2 1 5 5 C 1.37982 * 120.00457 * 162.83294 * 4 3 2 6 6 C 1.43198 * 119.99324 * 352.93517 * 5 4 3 7 7 N 4.79162 * 138.26340 * 23.41671 * 2 1 3 8 8 C 1.46991 * 120.00349 * 173.20407 * 5 4 3 9 9 O 1.21664 * 119.99655 * 359.72525 * 8 5 4 10 10 N 1.34769 * 119.99847 * 179.73258 * 8 5 4 11 11 C 1.46501 * 119.99836 * 179.97438 * 10 8 5 12 12 C 1.53004 * 109.47329 * 179.97438 * 11 10 8 13 13 C 1.53006 * 109.46714 * 299.99919 * 12 11 10 14 14 C 1.52995 * 109.47071 * 59.99673 * 12 11 10 15 15 C 1.50701 * 109.47022 * 180.02562 * 12 11 10 16 16 H 1.07999 * 120.00049 * 359.97438 * 15 12 11 17 17 C 1.37875 * 119.99630 * 180.02562 * 15 12 11 18 18 N 1.31510 * 120.00214 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 119.99758 * 179.97438 * 17 15 12 20 20 H 1.48494 * 109.47476 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47142 * 119.99892 * 19 17 15 22 22 H 1.48501 * 109.46867 * 239.99582 * 19 17 15 23 23 C 1.41797 * 106.91098 * 179.75328 * 3 2 1 24 24 C 1.36228 * 106.99559 * 0.24379 * 23 3 2 25 25 C 1.43201 * 125.76079 * 180.02562 * 24 23 3 26 26 N 4.71989 * 151.28164 * 179.68607 * 2 1 3 27 27 N 1.34333 * 125.85675 * 180.17927 * 2 1 3 28 28 C 1.46498 * 125.33133 * 359.97438 * 27 2 1 29 29 H 1.08999 * 109.46635 * 90.02442 * 1 2 3 30 30 H 1.08995 * 109.47061 * 210.02644 * 1 2 3 31 31 H 1.08997 * 109.46570 * 330.02522 * 1 2 3 32 32 H 1.08002 * 119.99859 * 342.83611 * 4 3 2 33 33 H 0.96993 * 120.00502 * 359.97438 * 10 8 5 34 34 H 1.09004 * 109.47031 * 299.99847 * 11 10 8 35 35 H 1.09003 * 109.47444 * 59.99526 * 11 10 8 36 36 H 1.08993 * 109.47170 * 60.00175 * 13 12 11 37 37 H 1.09007 * 109.46375 * 179.97438 * 13 12 11 38 38 H 1.09003 * 109.47202 * 299.99511 * 13 12 11 39 39 H 1.09004 * 109.46694 * 60.00080 * 14 12 11 40 40 H 1.08997 * 109.46889 * 179.97438 * 14 12 11 41 41 H 1.08993 * 109.47259 * 300.00737 * 14 12 11 42 42 H 0.97005 * 120.00380 * 180.02562 * 18 17 15 43 43 H 1.07998 * 126.50205 * 180.24367 * 23 3 2 44 44 H 1.09004 * 109.47313 * 270.26889 * 28 27 2 45 45 H 1.09007 * 109.47302 * 30.26670 * 28 27 2 46 46 H 1.08999 * 109.47360 * 150.27089 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3202 1.1250 0.0000 4 6 1.8781 2.5190 0.0005 5 6 2.7579 3.5218 0.3532 6 6 4.0543 3.1901 0.8630 7 7 5.0826 2.9271 1.2677 8 6 2.3623 4.9303 0.2111 9 8 1.2609 5.2120 -0.2222 10 7 3.2197 5.9096 0.5606 11 6 2.8256 7.3134 0.4184 12 6 3.9719 8.2144 0.8823 13 6 4.2901 7.9201 2.3497 14 6 5.2115 7.9436 0.0274 15 6 3.5662 9.6585 0.7367 16 1 2.5888 9.9086 0.3513 17 6 4.4434 10.6603 1.0943 18 7 5.6337 10.3558 1.5631 19 14 3.9408 12.4503 0.9131 20 1 2.5620 12.5245 0.3668 21 1 3.9838 13.1134 2.2411 22 1 4.8774 13.1360 -0.0131 23 6 3.6613 0.6646 0.0058 24 6 3.6149 -0.6969 0.0036 25 6 4.7477 -1.5729 0.0083 26 7 5.6463 -2.2679 0.0124 27 7 2.2939 -1.0887 -0.0034 28 6 1.8215 -2.4755 -0.0072 29 1 -0.3632 -0.0004 -1.0277 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3632 0.8902 0.5134 32 1 0.8629 2.7637 -0.2751 33 1 4.0977 5.6850 0.9062 34 1 2.5985 7.5229 -0.6269 35 1 1.9427 7.5065 1.0278 36 1 4.5833 6.8757 2.4555 37 1 5.1071 8.5617 2.6800 38 1 3.4070 8.1131 2.9588 39 1 4.9847 8.1532 -1.0179 40 1 6.0279 8.5858 0.3576 41 1 5.5046 6.8992 0.1331 42 1 6.2507 11.0606 1.8151 43 1 4.5508 1.2770 0.0111 44 1 1.7001 -2.8208 1.0195 45 1 0.8639 -2.5317 -0.5250 46 1 2.5488 -3.1057 -0.5189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491084414.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:54 Heat of formation + Delta-G solvation = 86.201062 kcal Electronic energy + Delta-G solvation = -28060.544284 eV Core-core repulsion = 24145.088560 eV Total energy + Delta-G solvation = -3915.455724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.15803 -39.49078 -37.05567 -36.86620 -36.35687 -34.57588 -33.27119 -32.82661 -31.87875 -30.78232 -27.67184 -27.41673 -25.70521 -25.68600 -25.11532 -23.95149 -21.63329 -21.07664 -20.30879 -19.13058 -18.75887 -17.48254 -16.45131 -16.26146 -15.82799 -15.53470 -15.01318 -14.93230 -14.73739 -14.60744 -14.19269 -13.99384 -13.84179 -13.64962 -13.56981 -13.39667 -13.25184 -13.19329 -13.02956 -12.85924 -12.67486 -12.55426 -12.51266 -12.19144 -12.15045 -11.90089 -11.36669 -11.17594 -10.86113 -10.63875 -10.44489 -10.34609 -10.18253 -9.73582 -9.60239 -9.27108 -9.09081 -8.75116 -8.50879 -8.34423 -8.13843 -5.98762 -4.09154 0.31351 0.90491 1.64994 2.31038 2.49958 2.66633 2.90374 3.02692 3.29610 3.35143 3.38251 3.42101 3.64187 3.79978 3.91935 4.05898 4.08786 4.39905 4.43055 4.43584 4.64938 4.72540 4.87101 4.97558 5.09645 5.24013 5.27883 5.34683 5.44632 5.78083 5.87832 6.09901 6.24904 6.29976 6.34656 6.40771 6.54328 6.77627 6.87880 6.95184 7.01160 7.01873 7.05371 7.38529 7.48730 7.59445 7.72640 8.00142 8.04261 8.17604 8.40576 8.59798 8.91821 9.56648 11.02651 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022789 B = 0.002162 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.345123 B =12950.724313 C =13910.395493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.117 3.883 3 C -0.189 4.189 4 C 0.096 3.904 5 C -0.136 4.136 6 C 0.256 3.744 7 N -0.419 5.419 8 C 0.563 3.437 9 O -0.546 6.546 10 N -0.709 5.709 11 C 0.131 3.869 12 C 0.054 3.946 13 C -0.132 4.132 14 C -0.132 4.132 15 C -0.504 4.504 16 H 0.059 0.941 17 C 0.065 3.935 18 N -0.885 5.885 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.080 4.080 24 C 0.046 3.954 25 C 0.279 3.721 26 N -0.403 5.403 27 N -0.412 5.412 28 C 0.060 3.940 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.162 0.838 33 H 0.398 0.602 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.005 0.995 37 H 0.086 0.914 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.086 0.914 41 H 0.005 0.995 42 H 0.259 0.741 43 H 0.159 0.841 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.896 -25.029 -3.338 27.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.005 4.005 3 C -0.196 4.196 4 C 0.072 3.928 5 C -0.143 4.143 6 C -0.057 4.057 7 N -0.095 5.095 8 C 0.349 3.651 9 O -0.426 6.426 10 N -0.358 5.358 11 C 0.009 3.991 12 C 0.054 3.946 13 C -0.189 4.189 14 C -0.190 4.190 15 C -0.542 4.542 16 H 0.077 0.923 17 C -0.136 4.136 18 N -0.524 5.524 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.107 4.107 24 C -0.064 4.064 25 C -0.037 4.037 26 N -0.080 5.080 27 N -0.085 5.085 28 C -0.081 4.081 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.180 0.820 33 H 0.233 0.767 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.024 0.976 37 H 0.104 0.896 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.104 0.896 41 H 0.024 0.976 42 H 0.069 0.931 43 H 0.176 0.824 44 H 0.104 0.896 45 H 0.117 0.883 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.584 -26.540 -2.940 28.370 hybrid contribution -0.281 1.161 -0.019 1.194 sum -9.866 -25.379 -2.959 27.390 Atomic orbital electron populations 1.20635 0.85946 1.04887 1.04259 1.21135 0.93906 0.84689 1.00790 1.18428 0.91982 0.91942 1.17205 1.22265 0.98241 0.87638 0.84697 1.18368 0.89203 0.94832 1.11907 1.25605 0.92924 0.93436 0.93725 1.81274 1.10978 1.07747 1.09545 1.17492 0.85002 0.83847 0.78765 1.90795 1.21091 1.83471 1.47267 1.46274 1.18051 1.07775 1.63684 1.21798 0.99470 0.77113 1.00706 1.18382 0.90298 0.93541 0.92419 1.21840 1.01915 0.97002 0.98187 1.21838 1.01679 0.97038 0.98406 1.21002 1.00870 0.89476 1.42893 0.92254 1.24897 0.94895 0.98962 0.94878 1.69821 1.06731 1.32202 1.43615 0.86515 0.78687 0.85013 0.77653 1.19721 1.21121 1.21126 1.21735 0.98111 0.91458 0.99431 1.15106 0.79726 0.90461 1.21090 1.24273 0.92870 0.93005 0.93507 1.81326 1.09072 1.07355 1.10231 1.43562 1.04281 1.07052 1.53602 1.22305 1.02403 0.78856 1.04540 0.89158 0.90627 0.88354 0.82028 0.76672 0.92218 0.92209 0.97634 0.89576 0.95292 0.95299 0.89565 0.97627 0.93065 0.82385 0.89604 0.88317 0.89347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.21 9.65 36.01 0.35 0.14 16 2 C 0.12 0.66 6.95 -81.28 -0.57 0.10 16 3 C -0.19 -1.59 5.92 -105.11 -0.62 -2.21 16 4 C 0.10 0.88 9.36 -36.46 -0.34 0.54 16 5 C -0.14 -1.71 5.90 -104.52 -0.62 -2.32 16 6 C 0.26 3.55 10.97 -22.48 -0.25 3.30 16 7 N -0.42 -6.46 17.32 41.83 0.72 -5.73 16 8 C 0.56 9.08 7.74 -12.72 -0.10 8.98 16 9 O -0.55 -9.87 16.30 5.22 0.09 -9.78 16 10 N -0.71 -12.69 4.91 -61.52 -0.30 -12.99 16 11 C 0.13 2.72 4.50 -4.04 -0.02 2.70 16 12 C 0.05 1.26 0.50 -155.66 -0.08 1.19 16 13 C -0.13 -3.04 8.08 37.16 0.30 -2.74 16 14 C -0.13 -3.05 8.08 37.16 0.30 -2.75 16 15 C -0.50 -13.08 8.01 -34.44 -0.28 -13.36 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 18 N -0.89 -23.83 9.35 55.43 0.52 -23.31 16 19 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 C -0.08 -0.81 9.28 -38.95 -0.36 -1.17 16 24 C 0.05 0.41 6.68 -83.98 -0.56 -0.15 16 25 C 0.28 2.90 15.11 -22.47 -0.34 2.56 16 26 N -0.40 -4.96 18.54 41.84 0.78 -4.18 16 27 N -0.41 -2.43 3.12 -116.57 -0.36 -2.80 16 28 C 0.06 0.13 10.45 59.85 0.63 0.76 16 29 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 30 H 0.07 0.04 7.63 -51.93 -0.40 -0.36 16 31 H 0.10 0.18 7.85 -51.93 -0.41 -0.23 16 32 H 0.16 1.16 7.52 -52.49 -0.39 0.76 16 33 H 0.40 7.04 5.04 -40.82 -0.21 6.84 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 37 H 0.09 2.20 6.07 -51.92 -0.32 1.88 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 2.21 6.07 -51.93 -0.32 1.89 16 41 H 0.00 0.10 6.86 -51.93 -0.36 -0.25 16 42 H 0.26 6.73 8.31 -40.82 -0.34 6.40 16 43 H 0.16 1.87 5.11 -52.49 -0.27 1.60 16 44 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 45 H 0.10 -0.02 7.55 -51.93 -0.39 -0.42 16 46 H 0.09 0.22 7.74 -51.93 -0.40 -0.18 16 LS Contribution 391.95 15.07 5.91 5.91 Total: -1.00 -31.84 391.95 -6.21 -38.05 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -5.89 Total: 2.01 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -2.64 Total: -2.82 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: 1.35 Total: -49.02 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.84 -6.21 -38.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491084414.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.253 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds