Wall clock time and date at job start Tue Mar 31 2020 23:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38811 * 125.85978 * 2 1 4 4 C 1.46246 * 126.54564 * 0.02562 * 3 2 1 5 5 C 1.37982 * 120.00457 * 162.83294 * 4 3 2 6 6 C 1.43198 * 119.99324 * 352.93517 * 5 4 3 7 7 N 4.79162 * 138.26340 * 23.41671 * 2 1 3 8 8 C 1.46991 * 120.00349 * 173.20407 * 5 4 3 9 9 O 1.21664 * 119.99655 * 359.72525 * 8 5 4 10 10 N 1.34769 * 119.99847 * 179.73258 * 8 5 4 11 11 C 1.46501 * 119.99836 * 179.97438 * 10 8 5 12 12 C 1.53004 * 109.47329 * 179.97438 * 11 10 8 13 13 C 1.53006 * 109.46714 * 299.99919 * 12 11 10 14 14 C 1.52995 * 109.47071 * 59.99673 * 12 11 10 15 15 C 1.50701 * 109.47022 * 180.02562 * 12 11 10 16 16 H 1.07999 * 120.00049 * 359.97438 * 15 12 11 17 17 C 1.37875 * 119.99630 * 180.02562 * 15 12 11 18 18 N 1.31510 * 120.00214 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 119.99758 * 179.97438 * 17 15 12 20 20 H 1.48494 * 109.47476 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47142 * 119.99892 * 19 17 15 22 22 H 1.48501 * 109.46867 * 239.99582 * 19 17 15 23 23 C 1.41797 * 106.91098 * 179.75328 * 3 2 1 24 24 C 1.36228 * 106.99559 * 0.24379 * 23 3 2 25 25 C 1.43201 * 125.76079 * 180.02562 * 24 23 3 26 26 N 4.71989 * 151.28164 * 179.68607 * 2 1 3 27 27 N 1.34333 * 125.85675 * 180.17927 * 2 1 3 28 28 C 1.46498 * 125.33133 * 359.97438 * 27 2 1 29 29 H 1.08999 * 109.46635 * 90.02442 * 1 2 3 30 30 H 1.08995 * 109.47061 * 210.02644 * 1 2 3 31 31 H 1.08997 * 109.46570 * 330.02522 * 1 2 3 32 32 H 1.08002 * 119.99859 * 342.83611 * 4 3 2 33 33 H 0.96993 * 120.00502 * 359.97438 * 10 8 5 34 34 H 1.09004 * 109.47031 * 299.99847 * 11 10 8 35 35 H 1.09003 * 109.47444 * 59.99526 * 11 10 8 36 36 H 1.08993 * 109.47170 * 60.00175 * 13 12 11 37 37 H 1.09007 * 109.46375 * 179.97438 * 13 12 11 38 38 H 1.09003 * 109.47202 * 299.99511 * 13 12 11 39 39 H 1.09004 * 109.46694 * 60.00080 * 14 12 11 40 40 H 1.08997 * 109.46889 * 179.97438 * 14 12 11 41 41 H 1.08993 * 109.47259 * 300.00737 * 14 12 11 42 42 H 0.97005 * 120.00380 * 180.02562 * 18 17 15 43 43 H 1.07998 * 126.50205 * 180.24367 * 23 3 2 44 44 H 1.09004 * 109.47313 * 270.26889 * 28 27 2 45 45 H 1.09007 * 109.47302 * 30.26670 * 28 27 2 46 46 H 1.08999 * 109.47360 * 150.27089 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3202 1.1250 0.0000 4 6 1.8781 2.5190 0.0005 5 6 2.7579 3.5218 0.3532 6 6 4.0543 3.1901 0.8630 7 7 5.0826 2.9271 1.2677 8 6 2.3623 4.9303 0.2111 9 8 1.2609 5.2120 -0.2222 10 7 3.2197 5.9096 0.5606 11 6 2.8256 7.3134 0.4184 12 6 3.9719 8.2144 0.8823 13 6 4.2901 7.9201 2.3497 14 6 5.2115 7.9436 0.0274 15 6 3.5662 9.6585 0.7367 16 1 2.5888 9.9086 0.3513 17 6 4.4434 10.6603 1.0943 18 7 5.6337 10.3558 1.5631 19 14 3.9408 12.4503 0.9131 20 1 2.5620 12.5245 0.3668 21 1 3.9838 13.1134 2.2411 22 1 4.8774 13.1360 -0.0131 23 6 3.6613 0.6646 0.0058 24 6 3.6149 -0.6969 0.0036 25 6 4.7477 -1.5729 0.0083 26 7 5.6463 -2.2679 0.0124 27 7 2.2939 -1.0887 -0.0034 28 6 1.8215 -2.4755 -0.0072 29 1 -0.3632 -0.0004 -1.0277 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3632 0.8902 0.5134 32 1 0.8629 2.7637 -0.2751 33 1 4.0977 5.6850 0.9062 34 1 2.5985 7.5229 -0.6269 35 1 1.9427 7.5065 1.0278 36 1 4.5833 6.8757 2.4555 37 1 5.1071 8.5617 2.6800 38 1 3.4070 8.1131 2.9588 39 1 4.9847 8.1532 -1.0179 40 1 6.0279 8.5858 0.3576 41 1 5.5046 6.8992 0.1331 42 1 6.2507 11.0606 1.8151 43 1 4.5508 1.2770 0.0111 44 1 1.7001 -2.8208 1.0195 45 1 0.8639 -2.5317 -0.5250 46 1 2.5488 -3.1057 -0.5189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491084414.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:54 Heat of formation + Delta-G solvation = 68.106924 kcal Electronic energy + Delta-G solvation = -28061.328904 eV Core-core repulsion = 24145.088560 eV Total energy + Delta-G solvation = -3916.240345 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.75447 -40.78242 -38.27533 -37.86706 -37.74769 -35.36372 -34.88169 -33.41799 -32.82615 -32.23733 -28.40817 -27.86197 -27.58296 -27.36787 -26.62892 -24.99660 -22.55534 -22.06801 -20.96370 -20.55783 -20.03262 -18.51107 -17.71556 -17.05899 -16.89496 -16.57457 -16.50659 -16.23266 -16.04314 -15.48219 -15.18677 -14.83730 -14.75922 -14.72101 -14.57881 -14.36390 -14.14199 -14.09551 -13.98001 -13.92167 -13.77291 -13.55861 -13.19776 -13.10288 -13.02667 -12.97147 -12.86245 -12.68096 -12.60173 -12.52695 -12.25806 -12.10545 -11.47499 -11.27194 -11.17579 -10.91455 -10.66538 -10.38429 -9.93585 -9.73670 -8.90984 -7.98703 -6.14990 -0.48853 0.22749 1.01906 1.44945 1.48742 1.58513 1.60578 1.62761 1.73398 1.81875 2.23210 2.35366 2.52941 2.70752 2.75200 3.00946 3.25120 3.55949 3.69583 3.88898 3.96174 4.20016 4.34040 4.44215 4.49752 4.56628 4.58637 4.64994 4.71876 4.79781 4.93462 4.97913 5.04131 5.06111 5.13098 5.16857 5.20541 5.28170 5.38203 5.39768 5.59546 5.65944 5.68131 5.70316 5.95225 6.12809 6.22778 6.22814 6.44684 6.48301 6.65023 6.90624 7.28689 7.53059 9.00724 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022789 B = 0.002162 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.345123 B =12950.724313 C =13910.395493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.164 3.836 3 C -0.225 4.225 4 C 0.157 3.843 5 C -0.182 4.182 6 C 0.277 3.723 7 N -0.464 5.464 8 C 0.572 3.428 9 O -0.568 6.568 10 N -0.717 5.717 11 C 0.148 3.852 12 C 0.048 3.952 13 C -0.121 4.121 14 C -0.121 4.121 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.022 3.978 18 N -0.905 5.905 19 Si 0.949 3.051 20 H -0.269 1.269 21 H -0.284 1.284 22 H -0.285 1.285 23 C -0.091 4.091 24 C 0.029 3.971 25 C 0.297 3.703 26 N -0.445 5.445 27 N -0.403 5.403 28 C 0.049 3.951 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.191 0.809 33 H 0.398 0.602 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.023 0.977 37 H 0.060 0.940 38 H 0.026 0.974 39 H 0.024 0.976 40 H 0.060 0.940 41 H 0.022 0.978 42 H 0.258 0.742 43 H 0.136 0.864 44 H 0.100 0.900 45 H 0.134 0.866 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.296 -27.331 -3.910 31.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.038 3.962 3 C -0.230 4.230 4 C 0.133 3.867 5 C -0.190 4.190 6 C -0.036 4.036 7 N -0.142 5.142 8 C 0.361 3.639 9 O -0.450 6.450 10 N -0.366 5.366 11 C 0.024 3.976 12 C 0.048 3.952 13 C -0.179 4.179 14 C -0.179 4.179 15 C -0.558 4.558 16 H 0.072 0.928 17 C -0.177 4.177 18 N -0.544 5.544 19 Si 0.776 3.224 20 H -0.193 1.193 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.119 4.119 24 C -0.080 4.080 25 C -0.018 4.018 26 N -0.123 5.123 27 N -0.076 5.076 28 C -0.090 4.090 29 H 0.132 0.868 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.208 0.792 33 H 0.233 0.767 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.041 0.959 37 H 0.079 0.921 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.079 0.921 41 H 0.041 0.959 42 H 0.068 0.932 43 H 0.153 0.847 44 H 0.118 0.882 45 H 0.153 0.847 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.975 -28.885 -3.513 31.859 hybrid contribution 0.616 1.626 0.104 1.742 sum -12.359 -27.259 -3.409 30.123 Atomic orbital electron populations 1.20968 0.82332 1.06744 1.06246 1.21764 0.95494 0.83367 0.95538 1.18450 0.91755 0.92467 1.20367 1.22626 0.98251 0.87142 0.78680 1.17890 0.89945 0.93427 1.17696 1.25747 0.92772 0.92484 0.92565 1.81275 1.12155 1.08900 1.11846 1.17771 0.84162 0.84663 0.77343 1.90769 1.21805 1.84099 1.48356 1.46155 1.18534 1.07005 1.64928 1.21349 0.97952 0.78530 0.99737 1.18387 0.91178 0.93127 0.92556 1.21676 1.00724 0.97488 0.97985 1.21678 1.00755 0.97515 0.97967 1.21297 1.00670 0.91113 1.42762 0.92802 1.25547 0.94996 1.02312 0.94858 1.69952 1.07337 1.32962 1.44106 0.85636 0.78374 0.80959 0.77415 1.19306 1.21012 1.21091 1.21687 0.98472 0.92034 0.99734 1.14971 0.80803 0.89784 1.22481 1.24474 0.92648 0.92270 0.92370 1.81331 1.10127 1.08849 1.11950 1.43872 1.02965 1.08785 1.51942 1.22705 1.03818 0.76405 1.06051 0.86790 0.87973 0.87435 0.79196 0.76702 0.93117 0.92962 0.95851 0.92136 0.95530 0.95643 0.92111 0.95866 0.93227 0.84677 0.88154 0.84742 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.23 9.65 71.24 0.69 0.92 16 2 C 0.16 1.12 6.95 42.31 0.29 1.41 16 3 C -0.22 -3.17 5.92 -20.18 -0.12 -3.29 16 4 C 0.16 2.45 9.36 24.29 0.23 2.67 16 5 C -0.18 -4.41 5.90 -19.80 -0.12 -4.53 16 6 C 0.28 7.77 10.97 88.33 0.97 8.74 16 7 N -0.46 -14.89 17.32 19.00 0.33 -14.56 16 8 C 0.57 18.12 7.74 86.54 0.67 18.79 16 9 O -0.57 -19.91 16.30 -4.24 -0.07 -19.98 16 10 N -0.72 -25.79 4.91 -466.77 -2.29 -28.08 16 11 C 0.15 6.18 4.50 86.38 0.39 6.57 16 12 C 0.05 2.28 0.50 -52.93 -0.03 2.25 16 13 C -0.12 -5.68 8.08 71.98 0.58 -5.09 16 14 C -0.12 -5.72 8.08 71.98 0.58 -5.14 16 15 C -0.52 -27.38 8.01 25.60 0.21 -27.18 16 16 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 17 C 0.02 1.17 5.15 84.65 0.44 1.61 16 18 N -0.90 -49.69 9.35 21.45 0.20 -49.49 16 19 Si 0.95 42.80 29.54 68.60 2.03 44.83 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 C -0.09 -1.78 9.28 22.68 0.21 -1.57 16 24 C 0.03 0.48 6.68 38.98 0.26 0.74 16 25 C 0.30 6.13 15.11 88.33 1.33 7.47 16 26 N -0.45 -11.15 18.54 19.00 0.35 -10.80 16 27 N -0.40 -3.34 3.12 -522.73 -1.63 -4.97 16 28 C 0.05 0.01 10.45 127.77 1.33 1.35 16 29 H 0.11 -0.58 8.14 -2.39 -0.02 -0.60 16 30 H 0.10 -0.63 7.63 -2.39 -0.02 -0.65 16 31 H 0.11 -0.28 7.85 -2.39 -0.02 -0.30 16 32 H 0.19 1.87 7.52 -2.91 -0.02 1.85 16 33 H 0.40 14.26 5.04 -92.71 -0.47 13.80 16 34 H 0.05 2.18 8.14 -2.39 -0.02 2.17 16 35 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.02 0.97 6.86 -2.39 -0.02 0.95 16 37 H 0.06 3.16 6.07 -2.38 -0.01 3.15 16 38 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.06 3.19 6.07 -2.39 -0.01 3.17 16 41 H 0.02 0.97 6.86 -2.39 -0.02 0.95 16 42 H 0.26 13.67 8.31 -92.70 -0.77 12.90 16 43 H 0.14 3.32 5.11 -2.91 -0.01 3.31 16 44 H 0.10 -0.17 8.14 -2.39 -0.02 -0.19 16 45 H 0.13 -0.87 7.55 -2.38 -0.02 -0.89 16 46 H 0.08 0.17 7.74 -2.39 -0.02 0.15 16 Total: -1.00 -72.78 391.95 7.40 -65.38 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.57 Total: 11.95 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 7.92 Total: 5.72 kcal Atomic # 7 Polarization: -104.86 SS G_CDS: -3.04 Total: -107.90 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.07 Total: -19.98 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -72.78 7.40 -65.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491084414.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.487 kcal (2) G-P(sol) polarization free energy of solvation -72.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds