Wall clock time and date at job start Tue Mar 31 2020 22:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38310 * 119.96470 * 2 1 4 4 C 1.38249 * 120.12677 * 180.02562 * 3 2 1 5 5 C 1.38139 * 120.06937 * 359.97438 * 4 3 2 6 6 C 1.38808 * 119.93543 * 0.02562 * 5 4 3 7 7 N 1.40223 * 120.06480 * 179.97438 * 6 5 4 8 8 C 1.35081 * 126.61783 * 5.00540 * 7 6 5 9 9 C 1.36618 * 106.79753 * 179.97438 * 8 7 6 10 10 C 1.47505 * 125.76766 * 179.97438 * 9 8 7 11 11 O 1.21593 * 120.00145 * 7.32117 * 10 9 8 12 12 N 1.34776 * 120.00056 * 187.31155 * 10 9 8 13 13 C 1.46921 * 120.63319 * 7.09216 * 12 10 9 14 14 C 1.53621 * 108.54461 * 126.36634 * 13 12 10 15 15 C 1.53044 * 109.24233 * 54.85968 * 14 13 12 16 16 C 1.50698 * 109.44864 * 178.49674 * 15 14 13 17 17 H 1.08005 * 119.99888 * 120.06413 * 16 15 14 18 18 C 1.37876 * 120.00147 * 300.05886 * 16 15 14 19 19 N 1.31507 * 119.99996 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99745 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46871 * 60.00620 * 20 18 16 22 22 H 1.48504 * 109.46859 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47302 * 300.00185 * 20 18 16 24 24 C 1.53042 * 109.53647 * 298.51161 * 15 14 13 25 25 C 1.46923 * 120.63111 * 187.37443 * 12 10 9 26 26 N 1.34425 * 108.46527 * 359.97438 * 9 8 7 27 27 N 1.28750 * 109.57731 * 359.73553 * 26 9 8 28 28 C 1.38093 * 119.96762 * 180.23427 * 2 1 3 29 29 H 1.09004 * 109.47298 * 90.00040 * 1 2 3 30 30 H 1.09000 * 109.47266 * 209.99872 * 1 2 3 31 31 H 1.09002 * 109.47542 * 330.00167 * 1 2 3 32 32 H 1.07994 * 119.93266 * 0.02562 * 3 2 1 33 33 H 1.08008 * 119.96248 * 179.97438 * 4 3 2 34 34 H 1.08001 * 120.03242 * 180.02562 * 5 4 3 35 35 H 1.07994 * 126.59865 * 359.97438 * 8 7 6 36 36 H 1.08996 * 109.59187 * 246.20598 * 13 12 10 37 37 H 1.09003 * 109.58489 * 6.62627 * 13 12 10 38 38 H 1.09003 * 109.63350 * 294.86901 * 14 13 12 39 39 H 1.09004 * 109.43196 * 174.72883 * 14 13 12 40 40 H 1.09002 * 109.45570 * 58.53360 * 15 14 13 41 41 H 0.97003 * 120.00168 * 179.97438 * 19 18 16 42 42 H 1.08993 * 109.49537 * 301.41233 * 24 15 14 43 43 H 1.08991 * 109.49525 * 181.31415 * 24 15 14 44 44 H 1.09001 * 109.58864 * 353.37239 * 25 12 10 45 45 H 1.09003 * 109.59253 * 113.65615 * 25 12 10 46 46 H 1.08004 * 120.03736 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5803 1.2021 -0.0005 5 6 4.2758 0.0086 -0.0005 6 6 3.5853 -1.1955 -0.0005 7 7 4.2885 -2.4086 -0.0011 8 6 5.6271 -2.5640 0.0930 9 6 5.8724 -3.9074 0.0527 10 6 7.2012 -4.5437 0.1245 11 8 8.1856 -3.8706 0.3623 12 7 7.3243 -5.8711 -0.0733 13 6 6.1739 -6.6724 -0.5127 14 6 6.5759 -7.4546 -1.7723 15 6 7.8352 -8.2728 -1.4774 16 6 8.2126 -9.0707 -2.6988 17 1 9.1748 -8.9207 -3.1658 18 6 7.3295 -9.9923 -3.2202 19 7 6.1577 -10.1747 -2.6519 20 14 7.7971 -10.9809 -4.7347 21 1 9.0184 -11.7760 -4.4491 22 1 6.6830 -11.8953 -5.0924 23 1 8.0614 -10.0569 -5.8668 24 6 8.9833 -7.3302 -1.1093 25 6 8.6099 -6.5456 0.1524 26 7 4.6981 -4.5513 -0.0633 27 7 3.7374 -3.6947 -0.0923 28 6 2.1968 -1.1963 -0.0049 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6561 2.1325 0.0004 33 1 4.1171 2.1394 -0.0010 34 1 5.3558 0.0124 -0.0005 35 1 6.3618 -1.7776 0.1827 36 1 5.8895 -7.3675 0.2772 37 1 5.3360 -6.0138 -0.7418 38 1 6.7765 -6.7589 -2.5870 39 1 5.7649 -8.1250 -2.0571 40 1 7.6413 -8.9509 -0.6463 41 1 5.5362 -10.8228 -3.0189 42 1 9.1613 -6.6357 -1.9303 43 1 9.8858 -7.9120 -0.9222 44 1 9.3801 -5.8034 0.3623 45 1 8.5210 -7.2287 0.9971 46 1 1.6568 -2.1317 -0.0091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541048707.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:04 Heat of formation + Delta-G solvation = 96.977638 kcal Electronic energy + Delta-G solvation = -28586.586837 eV Core-core repulsion = 24671.598421 eV Total energy + Delta-G solvation = -3914.988416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 3.93 seconds Orbital eigenvalues (eV) -42.56951 -39.95893 -39.26864 -36.73583 -35.25097 -33.46343 -32.93660 -31.56568 -31.13885 -30.23905 -29.63018 -27.52367 -26.29346 -24.74198 -24.10133 -22.85860 -22.14393 -21.89279 -21.12546 -20.09957 -18.90423 -17.85709 -16.95832 -16.45611 -16.29979 -16.02468 -15.83964 -15.42727 -15.14500 -14.65022 -14.49488 -14.37611 -14.16342 -13.71859 -13.54154 -13.07235 -12.92699 -12.85066 -12.74037 -12.67714 -12.29538 -12.26744 -12.10223 -11.77966 -11.52920 -11.43413 -11.33745 -10.89463 -10.72558 -10.54193 -10.29322 -10.05355 -9.77591 -9.63712 -9.41022 -9.34863 -9.10340 -8.84393 -8.75089 -8.30504 -7.93785 -5.95902 -4.02325 0.14461 0.75918 1.46983 1.71561 1.74489 3.18046 3.33813 3.34712 3.38590 3.41239 3.48584 3.98435 4.11317 4.26902 4.46007 4.48239 4.56023 4.69297 4.71467 4.78763 4.86216 5.11324 5.15882 5.17672 5.31849 5.34822 5.44822 5.58597 5.78891 5.79978 5.87113 5.97250 6.00075 6.04257 6.12842 6.19270 6.32557 6.50901 6.52443 6.67789 6.79394 6.94520 7.10448 7.24271 7.39763 7.73066 7.77230 7.97058 8.00643 8.13032 8.46757 8.47846 9.00746 9.62154 11.09388 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017314 B = 0.002362 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.805923 B =11851.654481 C =12910.640686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.064 4.064 3 C -0.119 4.119 4 C -0.091 4.091 5 C -0.133 4.133 6 C 0.143 3.857 7 N -0.315 5.315 8 C 0.087 3.913 9 C -0.078 4.078 10 C 0.595 3.405 11 O -0.557 6.557 12 N -0.580 5.580 13 C 0.081 3.919 14 C -0.121 4.121 15 C 0.047 3.953 16 C -0.512 4.512 17 H 0.054 0.946 18 C 0.061 3.939 19 N -0.890 5.890 20 Si 0.890 3.110 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.278 1.278 24 C -0.122 4.122 25 C 0.111 3.889 26 N -0.184 5.184 27 N -0.061 5.061 28 C -0.107 4.107 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.206 0.794 36 H 0.061 0.939 37 H 0.109 0.891 38 H 0.035 0.965 39 H 0.104 0.896 40 H 0.028 0.972 41 H 0.261 0.739 42 H 0.052 0.948 43 H 0.061 0.939 44 H 0.080 0.920 45 H 0.063 0.937 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.730 23.767 7.389 26.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.065 4.065 3 C -0.138 4.138 4 C -0.110 4.110 5 C -0.153 4.153 6 C 0.051 3.949 7 N -0.094 5.094 8 C -0.066 4.066 9 C -0.215 4.215 10 C 0.380 3.620 11 O -0.436 6.436 12 N -0.310 5.310 13 C -0.041 4.041 14 C -0.160 4.160 15 C 0.029 3.971 16 C -0.551 4.551 17 H 0.072 0.928 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.204 1.204 24 C -0.161 4.161 25 C -0.010 4.010 26 N -0.058 5.058 27 N -0.039 5.039 28 C -0.127 4.127 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.149 0.851 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.223 0.777 36 H 0.080 0.920 37 H 0.127 0.873 38 H 0.054 0.946 39 H 0.122 0.878 40 H 0.046 0.954 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.082 0.918 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.639 23.103 7.364 26.480 hybrid contribution 1.070 -0.080 -0.855 1.372 sum -9.569 23.023 6.509 25.768 Atomic orbital electron populations 1.20845 0.90113 1.03402 1.03004 1.19853 0.96714 0.92063 0.97884 1.21221 0.94253 0.97935 1.00353 1.21003 0.94188 0.97383 0.98414 1.20967 1.00702 0.90524 1.03145 1.17607 0.91687 0.81570 1.03989 1.47643 1.05442 1.07392 1.48892 1.23303 0.85529 0.99058 0.98664 1.21615 0.94320 0.90753 1.14852 1.16753 0.85139 0.82330 0.77749 1.90745 1.37550 1.63043 1.52242 1.48090 1.13137 1.06234 1.63496 1.22863 0.87529 0.95162 0.98535 1.22083 1.02957 0.97668 0.93257 1.18664 0.89831 0.91960 0.96690 1.21164 1.01598 1.20307 1.11997 0.92806 1.24961 0.95068 0.96894 0.97056 1.69835 1.07452 1.35099 1.40509 0.86694 0.77953 0.80026 0.83517 1.20336 1.21337 1.20404 1.22003 1.00523 0.98387 0.95148 1.21787 0.84298 0.95940 0.99016 1.74677 0.97697 1.23930 1.09454 1.82121 1.17686 0.81953 1.22134 1.20864 0.91253 0.99632 1.00930 0.90512 0.90944 0.91010 0.85104 0.84539 0.84696 0.77710 0.92032 0.87341 0.94573 0.87769 0.95434 0.92939 0.92901 0.92050 0.90198 0.91831 0.83980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 10.01 36.00 0.36 -0.20 16 2 C -0.06 -0.45 5.88 -104.65 -0.62 -1.06 16 3 C -0.12 -0.68 9.70 -39.55 -0.38 -1.07 16 4 C -0.09 -0.53 10.04 -39.61 -0.40 -0.93 16 5 C -0.13 -1.01 9.47 -39.41 -0.37 -1.38 16 6 C 0.14 1.45 6.69 -83.58 -0.56 0.89 16 7 N -0.32 -4.01 3.82 -10.42 -0.04 -4.05 16 8 C 0.09 1.12 10.61 -16.71 -0.18 0.94 16 9 C -0.08 -1.28 6.69 -83.54 -0.56 -1.84 16 10 C 0.60 11.09 7.67 -12.48 -0.10 10.99 16 11 O -0.56 -11.00 16.30 5.28 0.09 -10.91 16 12 N -0.58 -11.29 2.97 -173.75 -0.52 -11.80 16 13 C 0.08 1.65 6.11 -3.49 -0.02 1.63 16 14 C -0.12 -2.87 5.17 -26.39 -0.14 -3.00 16 15 C 0.05 1.16 2.06 -91.73 -0.19 0.97 16 16 C -0.51 -14.02 8.56 -34.44 -0.29 -14.31 16 17 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 18 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 19 N -0.89 -25.18 11.30 55.43 0.63 -24.55 16 20 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 C -0.12 -2.58 5.30 -26.61 -0.14 -2.72 16 25 C 0.11 2.10 6.44 -3.71 -0.02 2.08 16 26 N -0.18 -3.15 8.79 32.85 0.29 -2.86 16 27 N -0.06 -0.94 13.13 60.35 0.79 -0.15 16 28 C -0.11 -0.98 9.33 -39.41 -0.37 -1.35 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 31 H 0.07 0.24 8.09 -51.93 -0.42 -0.18 16 32 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 33 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 34 H 0.14 0.80 6.84 -52.49 -0.36 0.44 16 35 H 0.21 1.91 7.15 -52.49 -0.38 1.53 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.11 2.14 4.12 -78.17 -0.32 1.82 16 38 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.10 2.73 6.03 -51.93 -0.31 2.42 16 40 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.08 1.45 7.00 -51.93 -0.36 1.09 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.14 1.35 7.74 -52.48 -0.41 0.94 16 LS Contribution 376.40 15.07 5.67 5.67 Total: -1.00 -31.91 376.40 -8.50 -40.41 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -6.32 Total: 0.65 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -4.07 Total: -8.76 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 1.15 Total: -43.41 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.91 -8.50 -40.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541048707.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.392 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.94 seconds