Wall clock time and date at job start Tue Mar 31 2020 22:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38310 * 119.96470 * 2 1 4 4 C 1.38249 * 120.12677 * 180.02562 * 3 2 1 5 5 C 1.38139 * 120.06937 * 359.97438 * 4 3 2 6 6 C 1.38808 * 119.93543 * 0.02562 * 5 4 3 7 7 N 1.40223 * 120.06480 * 179.97438 * 6 5 4 8 8 C 1.35081 * 126.61783 * 5.00540 * 7 6 5 9 9 C 1.36618 * 106.79753 * 179.97438 * 8 7 6 10 10 C 1.47505 * 125.76766 * 179.97438 * 9 8 7 11 11 O 1.21593 * 120.00145 * 7.32117 * 10 9 8 12 12 N 1.34776 * 120.00056 * 187.31155 * 10 9 8 13 13 C 1.46921 * 120.63319 * 7.09216 * 12 10 9 14 14 C 1.53621 * 108.54461 * 126.36634 * 13 12 10 15 15 C 1.53044 * 109.24233 * 54.85968 * 14 13 12 16 16 C 1.50698 * 109.44864 * 178.49674 * 15 14 13 17 17 H 1.08005 * 119.99888 * 120.06413 * 16 15 14 18 18 C 1.37876 * 120.00147 * 300.05886 * 16 15 14 19 19 N 1.31507 * 119.99996 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99745 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46871 * 60.00620 * 20 18 16 22 22 H 1.48504 * 109.46859 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47302 * 300.00185 * 20 18 16 24 24 C 1.53042 * 109.53647 * 298.51161 * 15 14 13 25 25 C 1.46923 * 120.63111 * 187.37443 * 12 10 9 26 26 N 1.34425 * 108.46527 * 359.97438 * 9 8 7 27 27 N 1.28750 * 109.57731 * 359.73553 * 26 9 8 28 28 C 1.38093 * 119.96762 * 180.23427 * 2 1 3 29 29 H 1.09004 * 109.47298 * 90.00040 * 1 2 3 30 30 H 1.09000 * 109.47266 * 209.99872 * 1 2 3 31 31 H 1.09002 * 109.47542 * 330.00167 * 1 2 3 32 32 H 1.07994 * 119.93266 * 0.02562 * 3 2 1 33 33 H 1.08008 * 119.96248 * 179.97438 * 4 3 2 34 34 H 1.08001 * 120.03242 * 180.02562 * 5 4 3 35 35 H 1.07994 * 126.59865 * 359.97438 * 8 7 6 36 36 H 1.08996 * 109.59187 * 246.20598 * 13 12 10 37 37 H 1.09003 * 109.58489 * 6.62627 * 13 12 10 38 38 H 1.09003 * 109.63350 * 294.86901 * 14 13 12 39 39 H 1.09004 * 109.43196 * 174.72883 * 14 13 12 40 40 H 1.09002 * 109.45570 * 58.53360 * 15 14 13 41 41 H 0.97003 * 120.00168 * 179.97438 * 19 18 16 42 42 H 1.08993 * 109.49537 * 301.41233 * 24 15 14 43 43 H 1.08991 * 109.49525 * 181.31415 * 24 15 14 44 44 H 1.09001 * 109.58864 * 353.37239 * 25 12 10 45 45 H 1.09003 * 109.59253 * 113.65615 * 25 12 10 46 46 H 1.08004 * 120.03736 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5803 1.2021 -0.0005 5 6 4.2758 0.0086 -0.0005 6 6 3.5853 -1.1955 -0.0005 7 7 4.2885 -2.4086 -0.0011 8 6 5.6271 -2.5640 0.0930 9 6 5.8724 -3.9074 0.0527 10 6 7.2012 -4.5437 0.1245 11 8 8.1856 -3.8706 0.3623 12 7 7.3243 -5.8711 -0.0733 13 6 6.1739 -6.6724 -0.5127 14 6 6.5759 -7.4546 -1.7723 15 6 7.8352 -8.2728 -1.4774 16 6 8.2126 -9.0707 -2.6988 17 1 9.1748 -8.9207 -3.1658 18 6 7.3295 -9.9923 -3.2202 19 7 6.1577 -10.1747 -2.6519 20 14 7.7971 -10.9809 -4.7347 21 1 9.0184 -11.7760 -4.4491 22 1 6.6830 -11.8953 -5.0924 23 1 8.0614 -10.0569 -5.8668 24 6 8.9833 -7.3302 -1.1093 25 6 8.6099 -6.5456 0.1524 26 7 4.6981 -4.5513 -0.0633 27 7 3.7374 -3.6947 -0.0923 28 6 2.1968 -1.1963 -0.0049 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6561 2.1325 0.0004 33 1 4.1171 2.1394 -0.0010 34 1 5.3558 0.0124 -0.0005 35 1 6.3618 -1.7776 0.1827 36 1 5.8895 -7.3675 0.2772 37 1 5.3360 -6.0138 -0.7418 38 1 6.7765 -6.7589 -2.5870 39 1 5.7649 -8.1250 -2.0571 40 1 7.6413 -8.9509 -0.6463 41 1 5.5362 -10.8228 -3.0189 42 1 9.1613 -6.6357 -1.9303 43 1 9.8858 -7.9120 -0.9222 44 1 9.3801 -5.8034 0.3623 45 1 8.5210 -7.2287 0.9971 46 1 1.6568 -2.1317 -0.0091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541048707.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:59 Heat of formation + Delta-G solvation = 79.591450 kcal Electronic energy + Delta-G solvation = -28587.340759 eV Core-core repulsion = 24671.598421 eV Total energy + Delta-G solvation = -3915.742338 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -43.65918 -40.99936 -40.34358 -38.41045 -36.15633 -35.30032 -33.54989 -33.13294 -32.34711 -31.74292 -30.78866 -28.18243 -27.95498 -25.77110 -25.47575 -24.18772 -23.70406 -22.99257 -21.92501 -21.53682 -20.32889 -19.03501 -18.44230 -17.79320 -17.43120 -17.23421 -16.98427 -16.51015 -16.31364 -16.09358 -15.99340 -15.11263 -14.98373 -14.84803 -14.75524 -14.58594 -14.40471 -14.18692 -13.97011 -13.55972 -13.52839 -13.39408 -13.20798 -13.02837 -12.79577 -12.61990 -12.49119 -12.27776 -12.16600 -12.12514 -12.07483 -11.85341 -11.46450 -11.22678 -10.99153 -10.71323 -10.62886 -10.36803 -9.90920 -9.62612 -9.49740 -8.06368 -6.20555 -0.66643 0.22994 0.41567 0.69867 0.82665 1.42082 1.42985 1.50569 1.92258 2.10658 2.44341 2.62962 2.96618 3.13688 3.19799 3.56539 3.67554 3.80096 3.95632 3.98098 4.11783 4.23549 4.23857 4.31643 4.37039 4.42351 4.50373 4.52188 4.59302 4.77932 4.81537 4.82676 4.86671 4.96182 5.09959 5.20102 5.20882 5.23378 5.26642 5.29306 5.39926 5.43558 5.53577 5.57264 5.64602 5.88898 5.98522 6.11930 6.35083 6.39882 6.66807 6.89618 7.01232 7.46955 8.97017 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017314 B = 0.002362 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.805923 B =11851.654481 C =12910.640686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.071 4.071 3 C -0.109 4.109 4 C -0.088 4.088 5 C -0.131 4.131 6 C 0.103 3.897 7 N -0.300 5.300 8 C 0.109 3.891 9 C -0.109 4.109 10 C 0.599 3.401 11 O -0.568 6.568 12 N -0.589 5.589 13 C 0.098 3.902 14 C -0.111 4.111 15 C 0.044 3.956 16 C -0.534 4.534 17 H 0.051 0.949 18 C 0.014 3.986 19 N -0.914 5.914 20 Si 0.951 3.049 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.275 1.275 24 C -0.113 4.113 25 C 0.116 3.884 26 N -0.213 5.213 27 N -0.082 5.082 28 C -0.123 4.123 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.162 0.838 33 H 0.170 0.830 34 H 0.154 0.846 35 H 0.243 0.757 36 H 0.058 0.942 37 H 0.119 0.881 38 H 0.021 0.979 39 H 0.075 0.925 40 H 0.003 0.997 41 H 0.261 0.739 42 H 0.043 0.957 43 H 0.071 0.929 44 H 0.093 0.907 45 H 0.075 0.925 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.714 27.134 7.529 29.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.072 4.072 3 C -0.127 4.127 4 C -0.106 4.106 5 C -0.151 4.151 6 C 0.013 3.987 7 N -0.078 5.078 8 C -0.045 4.045 9 C -0.247 4.247 10 C 0.386 3.614 11 O -0.448 6.448 12 N -0.319 5.319 13 C -0.025 4.025 14 C -0.149 4.149 15 C 0.026 3.974 16 C -0.572 4.572 17 H 0.069 0.931 18 C -0.185 4.185 19 N -0.553 5.553 20 Si 0.777 3.223 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.200 1.200 24 C -0.151 4.151 25 C -0.006 4.006 26 N -0.085 5.085 27 N -0.060 5.060 28 C -0.143 4.143 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.180 0.820 33 H 0.188 0.812 34 H 0.171 0.829 35 H 0.259 0.741 36 H 0.076 0.924 37 H 0.136 0.864 38 H 0.040 0.960 39 H 0.094 0.906 40 H 0.021 0.979 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.090 0.910 44 H 0.111 0.889 45 H 0.093 0.907 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.648 26.489 7.510 29.520 hybrid contribution 0.958 -0.902 -0.881 1.583 sum -9.690 25.587 6.629 28.152 Atomic orbital electron populations 1.20900 0.88770 1.04147 1.03547 1.20135 0.97811 0.91751 0.97462 1.21668 0.94604 0.98531 0.97886 1.21446 0.94411 0.97919 0.96827 1.21297 1.01797 0.89961 1.02051 1.18023 0.92178 0.81203 1.07296 1.47786 1.05565 1.07512 1.46924 1.23770 0.86027 0.98512 0.96181 1.21466 0.93317 0.92128 1.17798 1.16940 0.85934 0.81729 0.76780 1.90721 1.38264 1.63038 1.52742 1.48076 1.12835 1.06781 1.64200 1.22586 0.88246 0.95049 0.96656 1.21849 1.01618 0.96991 0.94478 1.18633 0.91573 0.92239 0.94996 1.21530 1.01618 1.21048 1.13040 0.93082 1.25712 0.95045 0.97956 0.99807 1.69973 1.08170 1.35490 1.41703 0.85718 0.77835 0.78625 0.80091 1.19587 1.20946 1.20044 1.21847 0.99475 0.97734 0.96015 1.21749 0.84561 0.96202 0.98046 1.74533 0.98230 1.25151 1.10628 1.82039 1.17570 0.83122 1.23235 1.20941 0.91272 1.00160 1.01941 0.90000 0.91486 0.89040 0.82028 0.81244 0.82875 0.74072 0.92365 0.86426 0.95978 0.90629 0.97859 0.92989 0.93804 0.91045 0.88900 0.90696 0.85535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 10.01 71.24 0.71 -0.18 16 2 C -0.07 -0.84 5.88 -19.88 -0.12 -0.96 16 3 C -0.11 -0.84 9.70 22.29 0.22 -0.62 16 4 C -0.09 -0.66 10.04 22.25 0.22 -0.44 16 5 C -0.13 -1.60 9.47 22.38 0.21 -1.39 16 6 C 0.10 1.97 6.69 38.08 0.25 2.23 16 7 N -0.30 -7.48 3.82 -186.89 -0.71 -8.19 16 8 C 0.11 2.67 10.61 83.81 0.89 3.56 16 9 C -0.11 -3.55 6.69 40.81 0.27 -3.28 16 10 C 0.60 22.14 7.67 86.69 0.67 22.81 16 11 O -0.57 -21.75 16.30 -4.01 -0.07 -21.82 16 12 N -0.59 -23.10 2.97 -821.87 -2.44 -25.54 16 13 C 0.10 4.10 6.11 86.51 0.53 4.62 16 14 C -0.11 -5.47 5.17 30.82 0.16 -5.31 16 15 C 0.04 2.25 2.06 -11.51 -0.02 2.23 16 16 C -0.53 -29.91 8.56 25.60 0.22 -29.69 16 17 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 18 C 0.01 0.76 5.30 84.66 0.45 1.21 16 19 N -0.91 -53.19 11.30 21.45 0.24 -52.95 16 20 Si 0.95 44.32 29.54 68.60 2.03 46.35 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 24 C -0.11 -4.79 5.30 30.67 0.16 -4.63 16 25 C 0.12 4.35 6.44 86.36 0.56 4.91 16 26 N -0.21 -7.47 8.79 -49.98 -0.44 -7.91 16 27 N -0.08 -2.59 13.13 37.02 0.49 -2.10 16 28 C -0.12 -2.21 9.33 22.38 0.21 -2.00 16 29 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.07 0.58 8.09 -2.39 -0.02 0.57 16 31 H 0.09 0.34 8.09 -2.39 -0.02 0.32 16 32 H 0.16 0.27 8.06 -2.91 -0.02 0.25 16 33 H 0.17 0.19 8.06 -2.91 -0.02 0.17 16 34 H 0.15 1.23 6.84 -2.91 -0.02 1.21 16 35 H 0.24 3.77 7.15 -2.91 -0.02 3.75 16 36 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.12 4.83 4.12 -36.34 -0.15 4.68 16 38 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 4.18 6.03 -2.38 -0.01 4.16 16 40 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 41 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 42 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 44 H 0.09 3.26 7.00 -2.39 -0.02 3.25 16 45 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 46 H 0.13 2.56 7.74 -2.91 -0.02 2.54 16 Total: -1.00 -71.33 376.40 5.55 -65.78 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.86 Total: 13.32 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 5.59 Total: -6.94 kcal Atomic # 7 Polarization: -93.83 SS G_CDS: -2.86 Total: -96.70 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.07 Total: -21.82 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -71.33 5.55 -65.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541048707.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.375 kcal (2) G-P(sol) polarization free energy of solvation -71.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds