Wall clock time and date at job start Tue Mar 31 2020 23:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39731 * 125.77208 * 2 1 4 4 C 1.36153 * 107.85228 * 180.16251 * 3 2 1 5 5 N 1.39381 * 126.25947 * 179.84076 * 4 3 2 6 6 C 1.34775 * 120.00055 * 359.69608 * 5 4 3 7 7 O 1.21561 * 120.00176 * 359.97438 * 6 5 4 8 8 C 1.47829 * 119.99925 * 179.97438 * 6 5 4 9 9 C 1.39627 * 120.02758 * 0.02562 * 8 6 5 10 10 C 1.37999 * 119.74247 * 180.02562 * 9 8 6 11 11 C 1.38095 * 120.27827 * 359.95569 * 10 9 8 12 12 C 1.39085 * 120.71639 * 359.85514 * 11 10 9 13 13 C 1.39155 * 119.24224 * 0.30029 * 12 11 10 14 14 N 1.40103 * 110.94303 * 180.48012 * 12 11 10 15 15 C 1.46901 * 111.00258 * 103.46556 * 14 12 11 16 16 C 1.47900 * 107.88119 * 341.64919 * 14 12 11 17 17 C 1.51626 * 131.37469 * 179.60219 * 11 10 9 18 18 N 1.35804 * 107.47658 * 359.58636 * 4 3 2 19 19 C 1.46497 * 126.09711 * 180.24147 * 18 4 3 20 20 C 1.50701 * 109.47061 * 89.99381 * 19 18 4 21 21 H 1.07997 * 120.00199 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99811 * 180.02562 * 20 19 18 23 23 N 1.31517 * 120.00164 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99813 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46821 * 60.00332 * 24 22 20 26 26 H 1.48502 * 109.47058 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47243 * 300.00157 * 24 22 20 28 28 N 1.30826 * 125.77778 * 179.69209 * 2 1 3 29 29 H 1.09003 * 109.47626 * 270.27829 * 1 2 3 30 30 H 1.08992 * 109.47351 * 30.28028 * 1 2 3 31 31 H 1.09006 * 109.47234 * 150.27982 * 1 2 3 32 32 H 1.07994 * 126.07610 * 0.04005 * 3 2 1 33 33 H 0.97003 * 119.99782 * 179.68949 * 5 4 3 34 34 H 1.08005 * 120.13230 * 0.10525 * 9 8 6 35 35 H 1.07997 * 119.85900 * 180.23484 * 10 9 8 36 36 H 1.08001 * 119.96395 * 179.75155 * 13 12 11 37 37 H 1.09005 * 109.46960 * 299.89620 * 15 14 12 38 38 H 1.08997 * 109.47015 * 59.89396 * 15 14 12 39 39 H 1.08998 * 109.47080 * 179.89729 * 15 14 12 40 40 H 1.08998 * 110.77722 * 269.02596 * 16 14 12 41 41 H 1.09004 * 110.77439 * 145.60062 * 16 14 12 42 42 H 1.09005 * 110.73691 * 314.62023 * 17 11 10 43 43 H 1.08997 * 110.74359 * 77.76241 * 17 11 10 44 44 H 1.08995 * 109.47194 * 209.99282 * 19 18 4 45 45 H 1.09000 * 109.46989 * 329.99907 * 19 18 4 46 46 H 0.96999 * 119.99475 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3238 1.1337 0.0000 4 6 3.6193 0.7148 -0.0037 5 7 4.7494 1.5305 -0.0080 6 6 4.6128 2.8713 -0.0151 7 8 3.5038 3.3692 -0.0182 8 6 5.8114 3.7364 -0.0192 9 6 7.0855 3.1651 -0.0162 10 6 8.2004 3.9783 -0.0195 11 6 8.0602 5.3521 -0.0266 12 6 6.7986 5.9375 -0.0336 13 6 5.6709 5.1222 -0.0270 14 7 6.8950 7.3351 -0.0510 15 6 6.6123 7.8657 -1.3914 16 6 8.2592 7.7016 0.3873 17 6 9.0904 6.4647 -0.0236 18 7 3.6088 -0.6432 0.0034 19 6 4.7858 -1.5154 0.0077 20 6 5.1900 -1.8069 1.4299 21 1 4.6262 -1.3850 2.2488 22 6 6.2795 -2.6122 1.6857 23 7 6.9664 -3.1255 0.6886 24 14 6.7800 -2.9741 3.4487 25 1 5.6607 -3.6508 4.1520 26 1 7.9732 -3.8581 3.4530 27 1 7.1035 -1.7017 4.1426 28 7 2.2719 -1.0614 0.0057 29 1 -0.3634 0.0050 1.0276 30 1 -0.3633 0.8874 -0.5181 31 1 -0.3634 -0.8925 -0.5095 32 1 1.9874 2.1599 0.0006 33 1 5.6344 1.1332 -0.0059 34 1 7.1980 2.0910 -0.0127 35 1 9.1868 3.5384 -0.0211 36 1 4.6855 5.5643 -0.0283 37 1 7.3312 7.4584 -2.1024 38 1 5.6039 7.5797 -1.6901 39 1 6.6923 8.9526 -1.3762 40 1 8.2921 7.8483 1.4668 41 1 8.6071 8.5924 -0.1359 42 1 9.8724 6.2646 0.7089 43 1 9.5188 6.5968 -1.0171 44 1 4.5477 -2.4495 -0.5011 45 1 5.6075 -1.0193 -0.5091 46 1 7.7327 -3.6923 0.8686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542493075.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:20 Heat of formation + Delta-G solvation = 87.659245 kcal Electronic energy + Delta-G solvation = -28727.116066 eV Core-core repulsion = 24811.723574 eV Total energy + Delta-G solvation = -3915.392492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.22311 -40.69577 -39.20813 -36.72297 -34.79180 -33.77920 -32.69007 -32.06605 -30.25969 -29.84945 -29.03024 -27.96736 -26.20455 -26.02432 -24.18696 -22.84495 -22.57554 -21.30172 -20.96011 -19.78294 -19.17439 -17.46545 -16.87732 -16.58700 -16.35693 -16.02086 -15.54296 -15.41354 -15.16148 -14.68470 -14.32888 -14.18038 -14.00584 -13.86794 -13.77506 -13.41216 -12.89671 -12.81935 -12.75009 -12.59371 -12.49652 -12.30788 -12.06858 -11.93171 -11.77681 -11.56945 -11.50213 -11.25069 -11.09496 -10.87789 -10.40651 -10.33849 -9.96438 -9.83278 -9.76365 -9.53446 -9.06579 -8.72452 -8.24261 -7.90073 -7.43203 -6.34054 -4.42632 0.61288 1.12895 2.39646 2.74156 3.05332 3.18122 3.22466 3.26948 3.34130 3.51102 3.79260 3.80311 4.17734 4.24073 4.40684 4.57980 4.60872 4.78006 4.86239 4.99077 5.01446 5.06522 5.14072 5.21880 5.30727 5.37072 5.44896 5.52163 5.55767 5.64623 5.72894 6.01441 6.05540 6.10874 6.14396 6.16018 6.19121 6.23262 6.38257 6.42124 6.56303 6.68689 6.83188 6.91887 7.04150 7.51680 7.57534 7.62405 7.79108 7.90572 8.28209 8.61417 8.70771 9.25049 10.72917 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009869 B = 0.003305 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.470060 B = 8470.256147 C =10787.191082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.292 4.292 4 C 0.300 3.700 5 N -0.633 5.633 6 C 0.566 3.434 7 O -0.510 6.510 8 C -0.111 4.111 9 C -0.091 4.091 10 C -0.093 4.093 11 C -0.115 4.115 12 C 0.075 3.925 13 C -0.047 4.047 14 N -0.495 5.495 15 C 0.025 3.975 16 C 0.049 3.951 17 C -0.113 4.113 18 N -0.346 5.346 19 C 0.257 3.743 20 C -0.541 4.541 21 H 0.065 0.935 22 C 0.068 3.932 23 N -0.890 5.890 24 Si 0.906 3.094 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.274 1.274 28 N -0.283 5.283 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.162 0.838 33 H 0.415 0.585 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.140 0.860 37 H 0.034 0.966 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.057 0.943 45 H 0.043 0.957 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.405 20.217 -4.082 21.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.323 4.323 4 C 0.078 3.922 5 N -0.280 5.280 6 C 0.354 3.646 7 O -0.385 6.385 8 C -0.115 4.115 9 C -0.110 4.110 10 C -0.112 4.112 11 C -0.118 4.118 12 C -0.020 4.020 13 C -0.067 4.067 14 N -0.212 5.212 15 C -0.121 4.121 16 C -0.078 4.078 17 C -0.151 4.151 18 N -0.132 5.132 19 C 0.140 3.860 20 C -0.580 4.580 21 H 0.083 0.917 22 C -0.136 4.136 23 N -0.528 5.528 24 Si 0.732 3.268 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.199 1.199 28 N -0.108 5.108 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.179 0.821 33 H 0.253 0.747 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.158 0.842 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.102 0.898 44 H 0.075 0.925 45 H 0.061 0.939 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.588 19.403 -3.819 20.098 hybrid contribution 1.673 -0.147 0.524 1.759 sum 5.260 19.256 -3.296 20.232 Atomic orbital electron populations 1.20022 0.87567 1.02329 1.02168 1.22017 0.96536 0.90997 1.01941 1.21279 0.89046 1.00488 1.21517 1.17994 0.87865 0.83301 1.03001 1.42608 1.08431 1.05412 1.71568 1.18032 0.89036 0.80882 0.76682 1.90704 1.25974 1.73858 1.47992 1.19456 0.92593 0.93287 1.06142 1.21365 0.91282 1.00403 0.97978 1.20346 0.99098 0.91427 1.00302 1.21223 0.95261 0.94531 1.00803 1.19367 0.93200 0.88746 1.00701 1.20458 0.98286 0.90785 0.97207 1.60178 1.27844 1.07467 1.25742 1.22516 1.01976 1.00333 0.87255 1.23196 0.85240 0.97124 1.02199 1.21747 0.97580 0.92842 1.02947 1.49500 1.06480 1.02018 1.55230 1.19609 0.77833 0.89727 0.98867 1.21322 1.13345 1.31964 0.91358 0.91713 1.24929 0.95667 0.94834 0.98184 1.69910 1.19187 1.32500 1.31185 0.86420 0.78114 0.78531 0.83703 1.19834 1.20886 1.19931 1.77331 0.86140 1.21817 1.25512 0.91304 0.91132 0.91557 0.82053 0.74665 0.84640 0.85130 0.84187 0.94768 0.90658 0.90602 0.89046 0.89534 0.89154 0.89785 0.92495 0.93918 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.44 36.01 0.38 -0.56 16 2 C 0.05 1.02 7.20 -82.46 -0.59 0.43 16 3 C -0.29 -6.11 9.58 -39.77 -0.38 -6.49 16 4 C 0.30 6.49 7.68 -152.74 -1.17 5.32 16 5 N -0.63 -11.59 5.36 -12.21 -0.07 -11.66 16 6 C 0.57 9.67 7.74 -12.34 -0.10 9.57 16 7 O -0.51 -9.75 13.45 5.31 0.07 -9.68 16 8 C -0.11 -1.56 5.86 -105.07 -0.62 -2.17 16 9 C -0.09 -1.12 9.54 -39.15 -0.37 -1.49 16 10 C -0.09 -0.99 10.01 -39.72 -0.40 -1.39 16 11 C -0.12 -1.20 6.23 -103.90 -0.65 -1.85 16 12 C 0.08 0.87 5.58 -83.42 -0.47 0.41 16 13 C -0.05 -0.61 9.62 -38.85 -0.37 -0.99 16 14 N -0.49 -4.82 5.33 -176.88 -0.94 -5.76 16 15 C 0.03 0.19 9.29 60.07 0.56 0.75 16 16 C 0.05 0.35 7.00 -2.44 -0.02 0.33 16 17 C -0.11 -0.83 6.97 -26.59 -0.19 -1.01 16 18 N -0.35 -8.23 3.62 -61.45 -0.22 -8.45 16 19 C 0.26 6.46 6.02 -5.19 -0.03 6.43 16 20 C -0.54 -14.58 9.39 -34.44 -0.32 -14.91 16 21 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 22 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 23 N -0.89 -24.18 13.29 55.43 0.74 -23.45 16 24 Si 0.91 20.68 29.54 -169.99 -5.02 15.66 16 25 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 N -0.28 -6.67 12.56 33.64 0.42 -6.24 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.16 3.28 5.83 -52.49 -0.31 2.98 16 33 H 0.42 7.00 6.02 -40.82 -0.25 6.75 16 34 H 0.14 1.57 6.40 -52.48 -0.34 1.24 16 35 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 36 H 0.14 1.86 7.63 -52.49 -0.40 1.46 16 37 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.44 8.11 -51.93 -0.42 0.02 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.09 0.43 7.76 -51.93 -0.40 0.03 16 42 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 45 H 0.04 1.03 7.52 -51.93 -0.39 0.64 16 46 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 LS Contribution 384.80 15.07 5.80 5.80 Total: -1.00 -32.05 384.80 -10.34 -42.39 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.27 Total: 7.33 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -4.84 Total: -5.93 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.07 Total: -55.56 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.07 Total: -9.68 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.05 -10.34 -42.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542493075.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.047 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds