Wall clock time and date at job start Tue Mar 31 2020 23:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39731 * 125.77208 * 2 1 4 4 C 1.36153 * 107.85228 * 180.16251 * 3 2 1 5 5 N 1.39381 * 126.25947 * 179.84076 * 4 3 2 6 6 C 1.34775 * 120.00055 * 359.69608 * 5 4 3 7 7 O 1.21561 * 120.00176 * 359.97438 * 6 5 4 8 8 C 1.47829 * 119.99925 * 179.97438 * 6 5 4 9 9 C 1.39627 * 120.02758 * 0.02562 * 8 6 5 10 10 C 1.37999 * 119.74247 * 180.02562 * 9 8 6 11 11 C 1.38095 * 120.27827 * 359.95569 * 10 9 8 12 12 C 1.39085 * 120.71639 * 359.85514 * 11 10 9 13 13 C 1.39155 * 119.24224 * 0.30029 * 12 11 10 14 14 N 1.40103 * 110.94303 * 180.48012 * 12 11 10 15 15 C 1.46901 * 111.00258 * 103.46556 * 14 12 11 16 16 C 1.47900 * 107.88119 * 341.64919 * 14 12 11 17 17 C 1.51626 * 131.37469 * 179.60219 * 11 10 9 18 18 N 1.35804 * 107.47658 * 359.58636 * 4 3 2 19 19 C 1.46497 * 126.09711 * 180.24147 * 18 4 3 20 20 C 1.50701 * 109.47061 * 89.99381 * 19 18 4 21 21 H 1.07997 * 120.00199 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99811 * 180.02562 * 20 19 18 23 23 N 1.31517 * 120.00164 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99813 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46821 * 60.00332 * 24 22 20 26 26 H 1.48502 * 109.47058 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47243 * 300.00157 * 24 22 20 28 28 N 1.30826 * 125.77778 * 179.69209 * 2 1 3 29 29 H 1.09003 * 109.47626 * 270.27829 * 1 2 3 30 30 H 1.08992 * 109.47351 * 30.28028 * 1 2 3 31 31 H 1.09006 * 109.47234 * 150.27982 * 1 2 3 32 32 H 1.07994 * 126.07610 * 0.04005 * 3 2 1 33 33 H 0.97003 * 119.99782 * 179.68949 * 5 4 3 34 34 H 1.08005 * 120.13230 * 0.10525 * 9 8 6 35 35 H 1.07997 * 119.85900 * 180.23484 * 10 9 8 36 36 H 1.08001 * 119.96395 * 179.75155 * 13 12 11 37 37 H 1.09005 * 109.46960 * 299.89620 * 15 14 12 38 38 H 1.08997 * 109.47015 * 59.89396 * 15 14 12 39 39 H 1.08998 * 109.47080 * 179.89729 * 15 14 12 40 40 H 1.08998 * 110.77722 * 269.02596 * 16 14 12 41 41 H 1.09004 * 110.77439 * 145.60062 * 16 14 12 42 42 H 1.09005 * 110.73691 * 314.62023 * 17 11 10 43 43 H 1.08997 * 110.74359 * 77.76241 * 17 11 10 44 44 H 1.08995 * 109.47194 * 209.99282 * 19 18 4 45 45 H 1.09000 * 109.46989 * 329.99907 * 19 18 4 46 46 H 0.96999 * 119.99475 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3238 1.1337 0.0000 4 6 3.6193 0.7148 -0.0037 5 7 4.7494 1.5305 -0.0080 6 6 4.6128 2.8713 -0.0151 7 8 3.5038 3.3692 -0.0182 8 6 5.8114 3.7364 -0.0192 9 6 7.0855 3.1651 -0.0162 10 6 8.2004 3.9783 -0.0195 11 6 8.0602 5.3521 -0.0266 12 6 6.7986 5.9375 -0.0336 13 6 5.6709 5.1222 -0.0270 14 7 6.8950 7.3351 -0.0510 15 6 6.6123 7.8657 -1.3914 16 6 8.2592 7.7016 0.3873 17 6 9.0904 6.4647 -0.0236 18 7 3.6088 -0.6432 0.0034 19 6 4.7858 -1.5154 0.0077 20 6 5.1900 -1.8069 1.4299 21 1 4.6262 -1.3850 2.2488 22 6 6.2795 -2.6122 1.6857 23 7 6.9664 -3.1255 0.6886 24 14 6.7800 -2.9741 3.4487 25 1 5.6607 -3.6508 4.1520 26 1 7.9732 -3.8581 3.4530 27 1 7.1035 -1.7017 4.1426 28 7 2.2719 -1.0614 0.0057 29 1 -0.3634 0.0050 1.0276 30 1 -0.3633 0.8874 -0.5181 31 1 -0.3634 -0.8925 -0.5095 32 1 1.9874 2.1599 0.0006 33 1 5.6344 1.1332 -0.0059 34 1 7.1980 2.0910 -0.0127 35 1 9.1868 3.5384 -0.0211 36 1 4.6855 5.5643 -0.0283 37 1 7.3312 7.4584 -2.1024 38 1 5.6039 7.5797 -1.6901 39 1 6.6923 8.9526 -1.3762 40 1 8.2921 7.8483 1.4668 41 1 8.6071 8.5924 -0.1359 42 1 9.8724 6.2646 0.7089 43 1 9.5188 6.5968 -1.0171 44 1 4.5477 -2.4495 -0.5011 45 1 5.6075 -1.0193 -0.5091 46 1 7.7327 -3.6923 0.8686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542493075.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:19 Heat of formation + Delta-G solvation = 68.760466 kcal Electronic energy + Delta-G solvation = -28727.935578 eV Core-core repulsion = 24811.723574 eV Total energy + Delta-G solvation = -3916.212005 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.52691 -41.84371 -40.57911 -37.64653 -36.36135 -35.66321 -33.85901 -33.47505 -31.30027 -30.85254 -30.50205 -29.40555 -27.81775 -26.86634 -25.34823 -24.62366 -23.52442 -22.28754 -22.04201 -21.34787 -20.56841 -18.94939 -18.69763 -18.07636 -17.25377 -16.95070 -16.78033 -16.63110 -16.48047 -16.29308 -15.69202 -15.61536 -15.08207 -14.92083 -14.67112 -14.54771 -14.42335 -14.06429 -14.02580 -13.66468 -13.50783 -13.41157 -13.32495 -13.15028 -12.96682 -12.91915 -12.74278 -12.71352 -12.30226 -12.14366 -12.04640 -11.98382 -11.72804 -11.52337 -11.07513 -10.77272 -10.55757 -9.99927 -9.65604 -9.13371 -8.99216 -8.37523 -6.55215 -0.41332 0.21722 0.88704 1.24657 1.36149 1.38297 1.47101 1.65864 2.00894 2.11290 2.33247 2.59545 2.69629 2.92667 3.33989 3.54602 3.74698 3.80034 3.89938 4.01510 4.12935 4.16488 4.22781 4.41936 4.45644 4.56212 4.58840 4.69023 4.73916 4.76161 4.79250 4.82833 4.88949 4.89461 4.92788 4.95111 5.04492 5.15416 5.17661 5.20131 5.25193 5.29736 5.49407 5.51862 5.75093 5.89288 5.93567 6.07008 6.11190 6.22280 6.54385 6.83743 6.98004 7.16745 8.68788 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009869 B = 0.003305 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.470060 B = 8470.256147 C =10787.191082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.059 3.941 3 C -0.304 4.304 4 C 0.297 3.703 5 N -0.633 5.633 6 C 0.568 3.432 7 O -0.535 6.535 8 C -0.127 4.127 9 C -0.096 4.096 10 C -0.092 4.092 11 C -0.111 4.111 12 C 0.071 3.929 13 C -0.059 4.059 14 N -0.511 5.511 15 C 0.025 3.975 16 C 0.047 3.953 17 C -0.108 4.108 18 N -0.368 5.368 19 C 0.273 3.727 20 C -0.559 4.559 21 H 0.046 0.954 22 C 0.030 3.970 23 N -0.912 5.912 24 Si 0.967 3.033 25 H -0.278 1.278 26 H -0.270 1.270 27 H -0.266 1.266 28 N -0.326 5.326 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.168 0.832 33 H 0.420 0.580 34 H 0.137 0.863 35 H 0.157 0.843 36 H 0.128 0.872 37 H 0.039 0.961 38 H 0.062 0.938 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.113 0.887 42 H 0.108 0.892 43 H 0.101 0.899 44 H 0.029 0.971 45 H 0.047 0.953 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.179 22.172 -3.531 23.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.106 4.106 3 C -0.336 4.336 4 C 0.075 3.925 5 N -0.280 5.280 6 C 0.358 3.642 7 O -0.412 6.412 8 C -0.131 4.131 9 C -0.115 4.115 10 C -0.110 4.110 11 C -0.114 4.114 12 C -0.025 4.025 13 C -0.079 4.079 14 N -0.229 5.229 15 C -0.120 4.120 16 C -0.079 4.079 17 C -0.146 4.146 18 N -0.154 5.154 19 C 0.154 3.846 20 C -0.597 4.597 21 H 0.065 0.935 22 C -0.172 4.172 23 N -0.549 5.549 24 Si 0.791 3.209 25 H -0.204 1.204 26 H -0.194 1.194 27 H -0.191 1.191 28 N -0.151 5.151 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.185 0.815 33 H 0.259 0.741 34 H 0.155 0.845 35 H 0.174 0.826 36 H 0.146 0.854 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.116 0.884 40 H 0.110 0.890 41 H 0.131 0.869 42 H 0.126 0.874 43 H 0.119 0.881 44 H 0.047 0.953 45 H 0.065 0.935 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.379 21.384 -3.282 22.293 hybrid contribution 1.114 -0.608 0.314 1.307 sum 6.493 20.775 -2.968 21.968 Atomic orbital electron populations 1.20235 0.83750 1.04131 1.03771 1.22881 0.98812 0.89887 0.99036 1.21494 0.89044 1.00923 1.22089 1.18366 0.89277 0.82874 1.01986 1.42735 1.07854 1.05667 1.71764 1.18587 0.89866 0.80425 0.75365 1.90664 1.27269 1.74067 1.49173 1.19213 0.91841 0.93133 1.08910 1.21453 0.91171 1.00810 0.98112 1.20622 0.99536 0.91612 0.99267 1.21692 0.95945 0.95126 0.98616 1.19515 0.93048 0.89924 1.00055 1.20410 0.98645 0.90675 0.98216 1.60180 1.29731 1.06207 1.26797 1.22564 1.01450 1.01619 0.86402 1.23358 0.83701 0.98135 1.02663 1.21852 0.97056 0.91185 1.04476 1.49332 1.06355 1.02592 1.57133 1.19230 0.78571 0.88954 0.97833 1.21383 1.13886 1.32870 0.91589 0.93534 1.25656 0.95285 0.94196 1.02048 1.69980 1.19439 1.32561 1.32966 0.85475 0.77842 0.78701 0.78905 1.20390 1.19431 1.19053 1.77283 0.86343 1.23546 1.27892 0.89636 0.88569 0.90504 0.81461 0.74099 0.84507 0.82556 0.85363 0.94246 0.91874 0.88383 0.88981 0.86861 0.87350 0.88088 0.95295 0.93512 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.74 10.44 71.24 0.74 -1.00 16 2 C 0.06 2.44 7.20 43.07 0.31 2.75 16 3 C -0.30 -13.00 9.58 22.15 0.21 -12.78 16 4 C 0.30 13.30 7.68 131.19 1.01 14.31 16 5 N -0.63 -24.11 5.36 -310.80 -1.67 -25.78 16 6 C 0.57 20.16 7.74 86.78 0.67 20.84 16 7 O -0.53 -21.25 13.45 -3.91 -0.05 -21.30 16 8 C -0.13 -3.66 5.86 -20.15 -0.12 -3.78 16 9 C -0.10 -2.34 9.54 22.55 0.22 -2.13 16 10 C -0.09 -1.79 10.01 22.18 0.22 -1.57 16 11 C -0.11 -2.05 6.23 -19.40 -0.12 -2.17 16 12 C 0.07 1.55 5.58 38.24 0.21 1.77 16 13 C -0.06 -1.57 9.62 22.74 0.22 -1.35 16 14 N -0.51 -8.98 5.33 -713.51 -3.80 -12.78 16 15 C 0.03 0.34 9.29 127.69 1.19 1.52 16 16 C 0.05 0.52 7.00 86.65 0.61 1.13 16 17 C -0.11 -1.17 6.97 30.68 0.21 -0.96 16 18 N -0.37 -18.22 3.62 -348.33 -1.26 -19.49 16 19 C 0.27 14.30 6.02 85.63 0.52 14.82 16 20 C -0.56 -30.98 9.39 25.60 0.24 -30.74 16 21 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 22 C 0.03 1.61 5.46 84.65 0.46 2.07 16 23 N -0.91 -49.81 13.29 21.45 0.28 -49.53 16 24 Si 0.97 42.25 29.54 68.60 2.03 44.28 16 25 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 26 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 28 N -0.33 -15.82 12.56 -47.48 -0.60 -16.42 16 29 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.17 6.93 5.83 -2.91 -0.02 6.91 16 33 H 0.42 14.81 6.02 -92.71 -0.56 14.26 16 34 H 0.14 3.21 6.40 -2.91 -0.02 3.19 16 35 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 36 H 0.13 3.62 7.63 -2.91 -0.02 3.60 16 37 H 0.04 0.49 8.14 -2.38 -0.02 0.47 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.10 0.87 8.11 -2.39 -0.02 0.85 16 40 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 41 H 0.11 0.65 7.76 -2.39 -0.02 0.63 16 42 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 43 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.05 2.36 7.52 -2.39 -0.02 2.34 16 46 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -70.92 384.80 2.19 -68.74 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: 0.46 Total: 29.55 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 6.80 Total: 2.73 kcal Atomic # 7 Polarization: -116.95 SS G_CDS: -7.04 Total: -123.99 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.05 Total: -21.30 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -70.92 2.19 -68.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542493075.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.497 kcal (2) G-P(sol) polarization free energy of solvation -70.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds