Wall clock time and date at job start Tue Mar 31 2020 23:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40424 * 107.86568 * 179.84878 * 3 2 1 5 5 N 1.40088 * 125.97492 * 180.14682 * 4 3 2 6 6 C 1.34773 * 119.99960 * 0.29654 * 5 4 3 7 7 O 1.21564 * 120.00221 * 359.97438 * 6 5 4 8 8 C 1.47835 * 120.00230 * 180.02562 * 6 5 4 9 9 C 1.39629 * 120.02381 * 359.97438 * 8 6 5 10 10 C 1.37991 * 119.74270 * 180.13261 * 9 8 6 11 11 C 1.38094 * 120.28159 * 359.94662 * 10 9 8 12 12 C 1.39096 * 120.71451 * 359.83721 * 11 10 9 13 13 C 1.39159 * 119.23794 * 0.02788 * 12 11 10 14 14 N 1.40100 * 110.94174 * 180.48481 * 12 11 10 15 15 C 1.46899 * 111.00116 * 103.47235 * 14 12 11 16 16 C 1.47883 * 107.88563 * 341.64958 * 14 12 11 17 17 C 1.51628 * 131.38171 * 179.59262 * 11 10 9 18 18 N 1.31229 * 108.04913 * 0.41799 * 4 3 2 19 19 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 20 20 C 1.46503 * 125.97339 * 359.97438 * 19 2 1 21 21 C 1.50699 * 109.46808 * 90.00128 * 20 19 2 22 22 H 1.07995 * 120.00443 * 359.97438 * 21 20 19 23 23 C 1.37881 * 119.99491 * 179.97438 * 21 20 19 24 24 N 1.31507 * 120.00456 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99857 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46962 * 59.99923 * 25 23 21 27 27 H 1.48498 * 109.47204 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47109 * 300.00468 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 32 32 H 1.07999 * 126.06341 * 0.02562 * 3 2 1 33 33 H 0.96995 * 119.99809 * 180.29449 * 5 4 3 34 34 H 1.07995 * 120.13006 * 0.10446 * 9 8 6 35 35 H 1.08004 * 119.86409 * 179.97438 * 10 9 8 36 36 H 1.07996 * 119.96046 * 180.02562 * 13 12 11 37 37 H 1.09001 * 109.46698 * 299.89034 * 15 14 12 38 38 H 1.09004 * 109.46967 * 59.88821 * 15 14 12 39 39 H 1.08991 * 109.47158 * 179.89190 * 15 14 12 40 40 H 1.09002 * 110.77556 * 269.02612 * 16 14 12 41 41 H 1.09001 * 110.77880 * 145.60590 * 16 14 12 42 42 H 1.09003 * 110.73861 * 314.61804 * 17 11 10 43 43 H 1.08995 * 110.74462 * 77.75830 * 17 11 10 44 44 H 1.08999 * 109.46899 * 210.00130 * 20 19 2 45 45 H 1.08999 * 109.46830 * 329.99997 * 20 19 2 46 46 H 0.96998 * 120.00310 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0035 5 7 4.7730 1.4744 0.0076 6 6 4.6363 2.8151 0.0144 7 8 3.5273 3.3130 0.0166 8 6 5.8349 3.6805 0.0181 9 6 7.1090 3.1092 0.0151 10 6 8.2238 3.9224 0.0213 11 6 8.0837 5.2962 0.0295 12 6 6.8219 5.8816 0.0281 13 6 5.6943 5.0661 0.0189 14 7 6.9184 7.2792 0.0262 15 6 6.6365 7.8246 -1.3083 16 6 8.2820 7.6410 0.4694 17 6 9.1137 6.4087 0.0455 18 7 3.6337 -0.6578 -0.0035 19 7 2.3016 -1.0910 -0.0059 20 6 1.8499 -2.4846 -0.0129 21 6 1.6945 -2.9551 -1.4362 22 1 1.9102 -2.2832 -2.2537 23 6 1.2769 -4.2435 -1.6946 24 7 1.0138 -5.0616 -0.6992 25 14 1.0836 -4.8265 -3.4588 26 1 2.3890 -4.7251 -4.1594 27 1 0.6259 -6.2392 -3.4659 28 1 0.0819 -3.9785 -4.1534 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5186 31 1 -0.3633 0.8928 -0.5090 32 1 1.9718 2.1210 0.0004 33 1 5.6579 1.0771 0.0055 34 1 7.2215 2.0352 0.0083 35 1 9.2103 3.4826 0.0194 36 1 4.7090 5.5083 0.0173 37 1 7.3558 7.4253 -2.0233 38 1 5.6282 7.5419 -1.6109 39 1 6.7164 8.9113 -1.2810 40 1 8.3142 7.7757 1.5506 41 1 8.6303 8.5375 -0.0435 42 1 9.8953 6.2006 0.7762 43 1 9.5428 6.5519 -0.9461 44 1 2.5847 -3.1073 0.4974 45 1 0.8914 -2.5584 0.5009 46 1 0.7196 -5.9678 -0.8810 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000544385176.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:24 Heat of formation + Delta-G solvation = 89.441858 kcal Electronic energy + Delta-G solvation = -28010.933310 eV Core-core repulsion = 24095.618117 eV Total energy + Delta-G solvation = -3915.315192 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.28520 -40.66940 -39.35629 -36.83016 -34.92603 -33.40144 -32.78396 -31.52152 -30.90602 -30.24613 -29.55431 -26.71086 -26.34119 -26.29306 -24.39234 -22.94628 -22.57742 -21.40970 -20.96766 -19.79017 -19.20912 -17.46958 -16.69147 -16.61416 -16.27582 -16.13349 -15.69221 -15.41563 -15.16188 -14.89401 -14.43272 -14.26049 -14.04927 -13.96485 -13.83899 -13.50018 -13.01769 -12.93990 -12.67242 -12.47236 -12.43172 -12.30086 -12.19096 -12.03851 -11.68194 -11.59420 -11.40997 -11.35681 -11.09087 -10.82450 -10.47766 -10.24562 -9.98097 -9.87013 -9.63739 -9.54765 -9.17653 -8.64372 -8.34456 -7.94143 -7.45851 -6.25639 -4.33475 0.51009 1.00374 2.43032 2.68924 2.87681 3.23272 3.24606 3.27068 3.31450 3.42403 3.84312 3.85787 4.07047 4.29562 4.30572 4.50519 4.51235 4.67418 4.76301 4.87144 4.98508 5.04673 5.07827 5.12869 5.20055 5.33917 5.42759 5.44023 5.48241 5.60863 5.71828 5.90028 5.94303 5.98413 6.02119 6.10766 6.18948 6.24991 6.46473 6.47660 6.56350 6.73714 6.81513 6.93358 7.05042 7.42599 7.63505 7.67066 7.88634 8.04951 8.21440 8.63964 8.74590 9.32842 10.81516 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022693 B = 0.002022 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.574547 B =13842.963326 C =14247.448692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.092 3.908 3 C -0.289 4.289 4 C 0.263 3.737 5 N -0.625 5.625 6 C 0.565 3.435 7 O -0.510 6.510 8 C -0.109 4.109 9 C -0.095 4.095 10 C -0.095 4.095 11 C -0.117 4.117 12 C 0.079 3.921 13 C -0.048 4.048 14 N -0.495 5.495 15 C 0.025 3.975 16 C 0.049 3.951 17 C -0.113 4.113 18 N -0.319 5.319 19 N -0.316 5.316 20 C 0.259 3.741 21 C -0.537 4.537 22 H 0.064 0.936 23 C 0.066 3.934 24 N -0.891 5.891 25 Si 0.906 3.094 26 H -0.275 1.275 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.160 0.840 33 H 0.409 0.591 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.141 0.859 37 H 0.034 0.966 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.689 23.504 1.873 27.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.040 4.040 3 C -0.320 4.320 4 C 0.011 3.989 5 N -0.272 5.272 6 C 0.352 3.648 7 O -0.385 6.385 8 C -0.113 4.113 9 C -0.114 4.114 10 C -0.113 4.113 11 C -0.120 4.120 12 C -0.017 4.017 13 C -0.069 4.069 14 N -0.213 5.213 15 C -0.121 4.121 16 C -0.078 4.078 17 C -0.151 4.151 18 N -0.150 5.150 19 N -0.098 5.098 20 C 0.141 3.859 21 C -0.576 4.576 22 H 0.082 0.918 23 C -0.138 4.138 24 N -0.529 5.529 25 Si 0.733 3.267 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.177 0.823 33 H 0.246 0.754 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.159 0.841 37 H 0.053 0.947 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.102 0.898 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.122 22.785 2.242 26.900 hybrid contribution 0.596 -0.411 -1.425 1.599 sum 14.718 22.374 0.816 26.793 Atomic orbital electron populations 1.20382 0.87861 1.03895 1.02565 1.21071 0.94950 0.87105 1.00831 1.21260 0.89686 0.99865 1.21167 1.18930 0.87086 0.89585 1.03329 1.42302 1.07700 1.04910 1.72312 1.18068 0.88940 0.81040 0.76787 1.90724 1.25999 1.73903 1.47859 1.19518 0.92704 0.93352 1.05726 1.21278 0.91300 1.00083 0.98776 1.20321 0.98964 0.91490 1.00532 1.21225 0.95280 0.94561 1.00906 1.19394 0.93178 0.88825 1.00301 1.20498 0.98367 0.90886 0.97100 1.60162 1.27873 1.07138 1.26083 1.22523 1.02042 1.00295 0.87253 1.23198 0.85216 0.97210 1.02156 1.21749 0.97553 0.92885 1.02927 1.77253 1.00026 1.08405 1.29326 1.49005 1.00916 1.07815 1.52084 1.19694 0.95999 0.71293 0.98921 1.21285 1.46953 0.97971 0.91345 0.91790 1.24928 0.94671 0.96034 0.98136 1.69905 1.44792 1.07015 1.31208 0.86411 0.78814 0.77657 0.83783 1.19995 1.20958 1.19918 0.91045 0.89888 0.90588 0.82273 0.75418 0.84905 0.85263 0.84128 0.94740 0.90590 0.90527 0.89030 0.89485 0.89179 0.89773 0.92981 0.92752 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 9.89 36.01 0.36 -1.18 16 2 C 0.09 1.96 6.92 -82.28 -0.57 1.39 16 3 C -0.29 -6.04 9.52 -39.83 -0.38 -6.42 16 4 C 0.26 5.44 8.11 -154.44 -1.25 4.19 16 5 N -0.62 -10.08 5.40 -11.99 -0.06 -10.14 16 6 C 0.56 8.78 7.74 -12.34 -0.10 8.68 16 7 O -0.51 -9.37 13.45 5.31 0.07 -9.30 16 8 C -0.11 -1.33 5.86 -105.06 -0.62 -1.95 16 9 C -0.10 -0.92 9.54 -39.15 -0.37 -1.29 16 10 C -0.09 -0.79 10.01 -39.72 -0.40 -1.19 16 11 C -0.12 -1.02 6.23 -103.90 -0.65 -1.67 16 12 C 0.08 0.80 5.58 -83.42 -0.47 0.34 16 13 C -0.05 -0.57 9.62 -38.85 -0.37 -0.94 16 14 N -0.50 -4.29 5.33 -176.89 -0.94 -5.24 16 15 C 0.02 0.17 9.28 60.06 0.56 0.73 16 16 C 0.05 0.29 7.00 -2.45 -0.02 0.28 16 17 C -0.11 -0.67 6.97 -26.59 -0.19 -0.85 16 18 N -0.32 -7.43 12.59 31.43 0.40 -7.04 16 19 N -0.32 -7.54 3.59 -58.33 -0.21 -7.75 16 20 C 0.26 6.64 5.81 -5.19 -0.03 6.61 16 21 C -0.54 -14.80 9.39 -34.44 -0.32 -15.12 16 22 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 23 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 24 N -0.89 -25.02 13.29 55.43 0.74 -24.28 16 25 Si 0.91 21.11 29.54 -169.99 -5.02 16.09 16 26 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.08 1.53 7.71 -51.93 -0.40 1.13 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.16 3.24 5.91 -52.49 -0.31 2.93 16 33 H 0.41 5.32 6.85 -40.82 -0.28 5.04 16 34 H 0.13 1.03 6.40 -52.49 -0.34 0.69 16 35 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 36 H 0.14 1.74 7.63 -52.49 -0.40 1.34 16 37 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.39 8.11 -51.93 -0.42 -0.03 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.35 7.76 -51.93 -0.40 -0.06 16 42 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.05 1.38 7.65 -51.93 -0.40 0.98 16 46 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 384.77 15.07 5.80 5.80 Total: -1.00 -33.09 384.77 -10.44 -43.53 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -6.30 Total: 5.01 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -4.91 Total: -6.69 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: -0.08 Total: -54.44 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.07 Total: -9.30 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.09 -10.44 -43.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544385176.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.975 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds