Wall clock time and date at job start Tue Mar 31 2020 23:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40424 * 107.86568 * 179.84878 * 3 2 1 5 5 N 1.40088 * 125.97492 * 180.14682 * 4 3 2 6 6 C 1.34773 * 119.99960 * 0.29654 * 5 4 3 7 7 O 1.21564 * 120.00221 * 359.97438 * 6 5 4 8 8 C 1.47835 * 120.00230 * 180.02562 * 6 5 4 9 9 C 1.39629 * 120.02381 * 359.97438 * 8 6 5 10 10 C 1.37991 * 119.74270 * 180.13261 * 9 8 6 11 11 C 1.38094 * 120.28159 * 359.94662 * 10 9 8 12 12 C 1.39096 * 120.71451 * 359.83721 * 11 10 9 13 13 C 1.39159 * 119.23794 * 0.02788 * 12 11 10 14 14 N 1.40100 * 110.94174 * 180.48481 * 12 11 10 15 15 C 1.46899 * 111.00116 * 103.47235 * 14 12 11 16 16 C 1.47883 * 107.88563 * 341.64958 * 14 12 11 17 17 C 1.51628 * 131.38171 * 179.59262 * 11 10 9 18 18 N 1.31229 * 108.04913 * 0.41799 * 4 3 2 19 19 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 20 20 C 1.46503 * 125.97339 * 359.97438 * 19 2 1 21 21 C 1.50699 * 109.46808 * 90.00128 * 20 19 2 22 22 H 1.07995 * 120.00443 * 359.97438 * 21 20 19 23 23 C 1.37881 * 119.99491 * 179.97438 * 21 20 19 24 24 N 1.31507 * 120.00456 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99857 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46962 * 59.99923 * 25 23 21 27 27 H 1.48498 * 109.47204 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47109 * 300.00468 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 32 32 H 1.07999 * 126.06341 * 0.02562 * 3 2 1 33 33 H 0.96995 * 119.99809 * 180.29449 * 5 4 3 34 34 H 1.07995 * 120.13006 * 0.10446 * 9 8 6 35 35 H 1.08004 * 119.86409 * 179.97438 * 10 9 8 36 36 H 1.07996 * 119.96046 * 180.02562 * 13 12 11 37 37 H 1.09001 * 109.46698 * 299.89034 * 15 14 12 38 38 H 1.09004 * 109.46967 * 59.88821 * 15 14 12 39 39 H 1.08991 * 109.47158 * 179.89190 * 15 14 12 40 40 H 1.09002 * 110.77556 * 269.02612 * 16 14 12 41 41 H 1.09001 * 110.77880 * 145.60590 * 16 14 12 42 42 H 1.09003 * 110.73861 * 314.61804 * 17 11 10 43 43 H 1.08995 * 110.74462 * 77.75830 * 17 11 10 44 44 H 1.08999 * 109.46899 * 210.00130 * 20 19 2 45 45 H 1.08999 * 109.46830 * 329.99997 * 20 19 2 46 46 H 0.96998 * 120.00310 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0035 5 7 4.7730 1.4744 0.0076 6 6 4.6363 2.8151 0.0144 7 8 3.5273 3.3130 0.0166 8 6 5.8349 3.6805 0.0181 9 6 7.1090 3.1092 0.0151 10 6 8.2238 3.9224 0.0213 11 6 8.0837 5.2962 0.0295 12 6 6.8219 5.8816 0.0281 13 6 5.6943 5.0661 0.0189 14 7 6.9184 7.2792 0.0262 15 6 6.6365 7.8246 -1.3083 16 6 8.2820 7.6410 0.4694 17 6 9.1137 6.4087 0.0455 18 7 3.6337 -0.6578 -0.0035 19 7 2.3016 -1.0910 -0.0059 20 6 1.8499 -2.4846 -0.0129 21 6 1.6945 -2.9551 -1.4362 22 1 1.9102 -2.2832 -2.2537 23 6 1.2769 -4.2435 -1.6946 24 7 1.0138 -5.0616 -0.6992 25 14 1.0836 -4.8265 -3.4588 26 1 2.3890 -4.7251 -4.1594 27 1 0.6259 -6.2392 -3.4659 28 1 0.0819 -3.9785 -4.1534 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5186 31 1 -0.3633 0.8928 -0.5090 32 1 1.9718 2.1210 0.0004 33 1 5.6579 1.0771 0.0055 34 1 7.2215 2.0352 0.0083 35 1 9.2103 3.4826 0.0194 36 1 4.7090 5.5083 0.0173 37 1 7.3558 7.4253 -2.0233 38 1 5.6282 7.5419 -1.6109 39 1 6.7164 8.9113 -1.2810 40 1 8.3142 7.7757 1.5506 41 1 8.6303 8.5375 -0.0435 42 1 9.8953 6.2006 0.7762 43 1 9.5428 6.5519 -0.9461 44 1 2.5847 -3.1073 0.4974 45 1 0.8914 -2.5584 0.5009 46 1 0.7196 -5.9678 -0.8810 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000544385176.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:23 Heat of formation + Delta-G solvation = 69.414027 kcal Electronic energy + Delta-G solvation = -28011.801781 eV Core-core repulsion = 24095.618117 eV Total energy + Delta-G solvation = -3916.183664 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.42551 -41.85162 -40.62466 -37.62255 -36.45100 -35.34103 -33.50353 -33.07418 -32.65737 -30.99035 -30.36693 -28.55777 -27.90468 -26.86539 -25.64297 -24.50486 -23.46556 -22.22880 -22.02339 -21.31410 -20.60195 -18.82443 -18.53082 -17.83624 -17.29661 -16.97593 -16.85128 -16.62495 -16.46421 -16.22018 -15.88656 -15.60932 -15.06639 -14.85558 -14.75260 -14.54404 -14.34283 -14.01921 -13.84522 -13.71705 -13.59999 -13.47298 -13.29499 -13.17210 -12.96831 -12.87745 -12.68523 -12.67300 -12.25745 -12.15329 -12.12853 -12.00568 -11.60264 -11.39910 -11.06325 -10.73729 -10.53246 -9.96459 -9.62111 -9.18842 -8.98459 -8.33210 -6.50869 -0.35956 0.25115 0.96872 1.25772 1.38178 1.39614 1.47538 1.50284 2.12223 2.20876 2.36453 2.64735 2.74528 2.96526 3.39588 3.57512 3.75534 3.86827 3.92840 4.05973 4.12188 4.16489 4.20466 4.42154 4.44548 4.47200 4.56850 4.71342 4.75031 4.76031 4.79177 4.85559 4.89335 4.93569 4.95586 4.98859 5.06167 5.09829 5.17550 5.20627 5.28177 5.32981 5.52868 5.55631 5.80176 5.87332 5.90113 6.13123 6.20314 6.23682 6.60778 6.89794 7.01877 7.19928 8.72673 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022693 B = 0.002022 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.574547 B =13842.963326 C =14247.448692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.089 3.911 3 C -0.300 4.300 4 C 0.272 3.728 5 N -0.617 5.617 6 C 0.567 3.433 7 O -0.544 6.544 8 C -0.126 4.126 9 C -0.092 4.092 10 C -0.091 4.091 11 C -0.113 4.113 12 C 0.069 3.931 13 C -0.064 4.064 14 N -0.514 5.514 15 C 0.025 3.975 16 C 0.046 3.954 17 C -0.108 4.108 18 N -0.354 5.354 19 N -0.340 5.340 20 C 0.275 3.725 21 C -0.554 4.554 22 H 0.049 0.951 23 C 0.023 3.977 24 N -0.917 5.917 25 Si 0.971 3.029 26 H -0.275 1.275 27 H -0.272 1.272 28 H -0.266 1.266 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.166 0.834 33 H 0.424 0.576 34 H 0.151 0.849 35 H 0.162 0.838 36 H 0.122 0.878 37 H 0.039 0.961 38 H 0.061 0.939 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.099 0.901 44 H 0.026 0.974 45 H 0.053 0.947 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.755 25.002 1.105 30.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.041 4.041 3 C -0.331 4.331 4 C 0.018 3.982 5 N -0.267 5.267 6 C 0.356 3.644 7 O -0.421 6.421 8 C -0.130 4.130 9 C -0.111 4.111 10 C -0.110 4.110 11 C -0.116 4.116 12 C -0.027 4.027 13 C -0.085 4.085 14 N -0.232 5.232 15 C -0.120 4.120 16 C -0.080 4.080 17 C -0.145 4.145 18 N -0.185 5.185 19 N -0.123 5.123 20 C 0.156 3.844 21 C -0.592 4.592 22 H 0.067 0.933 23 C -0.178 4.178 24 N -0.555 5.555 25 Si 0.794 3.206 26 H -0.201 1.201 27 H -0.197 1.197 28 H -0.191 1.191 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.120 0.880 32 H 0.183 0.817 33 H 0.263 0.737 34 H 0.168 0.832 35 H 0.179 0.821 36 H 0.140 0.860 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.117 0.883 44 H 0.044 0.956 45 H 0.071 0.929 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 16.218 24.308 1.483 29.259 hybrid contribution 0.046 -0.692 -1.131 1.327 sum 16.264 23.616 0.352 28.676 Atomic orbital electron populations 1.20511 0.85227 1.04441 1.04184 1.21748 0.96724 0.86359 0.99290 1.21439 0.89978 0.99981 1.21669 1.19245 0.88577 0.89260 1.01110 1.42380 1.07215 1.04843 1.72246 1.18669 0.89730 0.80722 0.75250 1.90687 1.27680 1.74329 1.49356 1.19240 0.92166 0.92865 1.08725 1.21503 0.90548 1.01241 0.97821 1.20672 0.99816 0.91343 0.99121 1.21703 0.95598 0.95456 0.98806 1.19517 0.93200 0.89807 1.00170 1.20433 0.98448 0.91143 0.98518 1.60155 1.29817 1.06259 1.26924 1.22547 1.01357 1.01437 0.86670 1.23351 0.83755 0.98311 1.02546 1.21839 0.97097 0.91240 1.04363 1.77174 1.00152 1.09691 1.31445 1.48816 1.01662 1.07578 1.54234 1.19270 0.94982 0.72275 0.97833 1.21397 1.47737 0.98388 0.91719 0.93262 1.25729 0.93936 0.95869 1.02264 1.69988 1.44912 1.07428 1.33156 0.85418 0.78744 0.77690 0.78718 1.20064 1.19697 1.19068 0.88796 0.91277 0.87968 0.81699 0.73699 0.83189 0.82078 0.85968 0.94230 0.92056 0.88554 0.88956 0.87155 0.87174 0.88286 0.95618 0.92924 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.93 9.89 71.24 0.70 -2.22 16 2 C 0.09 3.87 6.92 41.38 0.29 4.15 16 3 C -0.30 -12.77 9.52 22.11 0.21 -12.56 16 4 C 0.27 11.49 8.11 133.35 1.08 12.57 16 5 N -0.62 -20.13 5.40 -310.13 -1.67 -21.81 16 6 C 0.57 18.00 7.74 86.78 0.67 18.67 16 7 O -0.54 -20.70 13.45 -3.92 -0.05 -20.75 16 8 C -0.13 -3.08 5.86 -20.15 -0.12 -3.20 16 9 C -0.09 -1.63 9.54 22.55 0.22 -1.41 16 10 C -0.09 -1.26 10.01 22.18 0.22 -1.04 16 11 C -0.11 -1.67 6.23 -19.40 -0.12 -1.80 16 12 C 0.07 1.34 5.58 38.25 0.21 1.55 16 13 C -0.06 -1.56 9.62 22.74 0.22 -1.34 16 14 N -0.51 -8.16 5.33 -713.55 -3.80 -11.96 16 15 C 0.03 0.32 9.28 127.69 1.19 1.50 16 16 C 0.05 0.42 7.00 86.65 0.61 1.03 16 17 C -0.11 -0.86 6.97 30.68 0.21 -0.65 16 18 N -0.35 -16.97 12.59 -54.48 -0.69 -17.65 16 19 N -0.34 -16.78 3.59 -338.44 -1.22 -18.00 16 20 C 0.28 14.68 5.81 85.63 0.50 15.18 16 21 C -0.55 -31.27 9.39 25.60 0.24 -31.03 16 22 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 23 C 0.02 1.27 5.46 84.66 0.46 1.74 16 24 N -0.92 -51.90 13.29 21.45 0.28 -51.61 16 25 Si 0.97 43.21 29.54 68.60 2.03 45.23 16 26 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 28 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 29 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.07 2.56 7.71 -2.39 -0.02 2.55 16 31 H 0.10 2.92 8.14 -2.38 -0.02 2.90 16 32 H 0.17 6.82 5.91 -2.91 -0.02 6.80 16 33 H 0.42 10.91 6.85 -92.71 -0.63 10.27 16 34 H 0.15 2.03 6.40 -2.91 -0.02 2.01 16 35 H 0.16 1.22 8.06 -2.91 -0.02 1.19 16 36 H 0.12 3.28 7.63 -2.91 -0.02 3.26 16 37 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.10 0.79 8.11 -2.39 -0.02 0.77 16 40 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.11 0.48 7.76 -2.39 -0.02 0.46 16 42 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.10 0.57 8.14 -2.39 -0.02 0.56 16 44 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.05 2.78 7.65 -2.39 -0.02 2.76 16 46 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -73.58 384.77 2.05 -71.53 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.38 Total: 23.87 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 6.79 Total: 1.15 kcal Atomic # 7 Polarization: -113.94 SS G_CDS: -7.09 Total: -121.03 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.05 Total: -20.75 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -73.58 2.05 -71.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544385176.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.940 kcal (2) G-P(sol) polarization free energy of solvation -73.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds