Wall clock time and date at job start Tue Mar 31 2020 23:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.32411 * 120.35115 * 2 1 4 4 C 1.32517 * 120.93715 * 180.02562 * 3 2 1 5 5 C 1.48415 * 119.17456 * 179.97438 * 4 3 2 6 6 C 1.39267 * 119.72102 * 359.73223 * 5 4 3 7 7 C 1.38489 * 119.06923 * 179.75560 * 6 5 4 8 8 C 1.38715 * 118.49775 * 0.50437 * 7 6 5 9 9 C 1.38360 * 119.35131 * 359.73051 * 8 7 6 10 10 N 1.31679 * 120.88838 * 0.02732 * 9 8 7 11 11 N 1.32557 * 121.65212 * 359.71882 * 4 3 2 12 12 C 1.32812 * 120.60998 * 0.56512 * 11 4 3 13 13 N 1.38553 * 120.49010 * 179.72051 * 12 11 4 14 14 C 1.47844 * 110.99599 * 294.29495 * 13 12 11 15 15 C 1.54903 * 104.79429 * 146.36612 * 14 13 12 16 16 C 1.55139 * 101.65219 * 322.92423 * 15 14 13 17 17 O 1.42902 * 110.70707 * 277.27217 * 16 15 14 18 18 C 1.50702 * 110.70775 * 154.03920 * 16 15 14 19 19 H 1.08003 * 119.99830 * 11.18981 * 18 16 15 20 20 C 1.37876 * 120.00186 * 191.18555 * 18 16 15 21 21 N 1.31516 * 120.00134 * 174.29847 * 20 18 16 22 22 Si 1.86799 * 119.99930 * 354.30643 * 20 18 16 23 23 H 1.48500 * 109.47468 * 94.01279 * 22 20 18 24 24 H 1.48501 * 109.47005 * 214.01010 * 22 20 18 25 25 H 1.48498 * 109.47239 * 334.00998 * 22 20 18 26 26 C 1.47442 * 111.00018 * 55.13278 * 13 12 11 27 27 C 1.38184 * 120.35962 * 180.02562 * 2 1 3 28 28 C 1.50711 * 120.75245 * 0.02562 * 27 2 1 29 29 H 1.09001 * 109.46827 * 269.98064 * 1 2 3 30 30 H 1.08997 * 109.46829 * 29.97755 * 1 2 3 31 31 H 1.08998 * 109.46977 * 149.98481 * 1 2 3 32 32 H 1.07998 * 120.46492 * 359.97438 * 6 5 4 33 33 H 1.08004 * 120.74998 * 180.21430 * 7 6 5 34 34 H 1.07997 * 120.32287 * 179.70819 * 8 7 6 35 35 H 1.07994 * 119.55161 * 180.02562 * 9 8 7 36 36 H 1.09006 * 110.37000 * 265.18820 * 14 13 12 37 37 H 1.08995 * 110.38043 * 27.53013 * 14 13 12 38 38 H 1.08997 * 110.99764 * 81.02119 * 15 14 13 39 39 H 1.08998 * 110.99110 * 204.79787 * 15 14 13 40 40 H 0.96698 * 114.00367 * 293.59776 * 17 16 15 41 41 H 0.96998 * 119.99878 * 180.02562 * 21 20 18 42 42 H 1.09009 * 109.88657 * 356.15105 * 26 13 12 43 43 H 1.09004 * 109.88512 * 117.33455 * 26 13 12 44 44 H 1.08998 * 109.46475 * 275.88619 * 28 27 2 45 45 H 1.08995 * 109.47586 * 35.88867 * 28 27 2 46 46 H 1.09005 * 109.46881 * 155.89324 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1761 1.1426 0.0000 4 6 3.5012 1.1562 -0.0005 5 6 4.2114 2.4594 -0.0011 6 6 3.4798 3.6444 -0.0067 7 6 4.1563 4.8528 -0.0020 8 6 5.5433 4.8349 -0.0025 9 6 6.2058 3.6202 -0.0020 10 7 5.5375 2.4857 -0.0016 11 7 4.2083 0.0350 0.0045 12 6 3.6023 -1.1468 -0.0010 13 7 4.3439 -2.3172 -0.0016 14 6 5.1117 -2.4571 -1.2572 15 6 6.4209 -3.1738 -0.8425 16 6 6.7014 -2.5364 0.5438 17 8 7.3617 -1.2776 0.3969 18 6 7.5144 -3.4688 1.4044 19 1 7.9683 -4.3471 0.9696 20 6 7.6788 -3.2007 2.7468 21 7 8.2920 -4.0696 3.5206 22 14 7.0305 -1.6035 3.4665 23 1 5.6701 -1.8256 4.0189 24 1 7.9362 -1.1455 4.5506 25 1 6.9699 -0.5696 2.4023 26 6 5.2872 -2.3455 1.1312 27 6 2.2055 -1.1923 -0.0005 28 6 1.4774 -2.5119 -0.0017 29 1 -0.3633 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5141 32 1 2.4001 3.6213 -0.0111 33 1 3.6161 5.7881 -0.0027 34 1 6.1006 5.7600 -0.0037 35 1 7.2856 3.6025 -0.0020 36 1 4.5584 -3.0631 -1.9748 37 1 5.3329 -1.4764 -1.6782 38 1 6.2663 -4.2491 -0.7538 39 1 7.2256 -2.9538 -1.5440 40 1 8.2546 -1.3420 0.0313 41 1 8.4073 -3.8811 4.4651 42 1 5.2372 -1.4044 1.6791 43 1 5.0457 -3.1764 1.7941 44 1 1.2092 -2.7797 1.0203 45 1 0.5731 -2.4275 -0.6044 46 1 2.1234 -3.2829 -0.4217 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591974463.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:27 Heat of formation + Delta-G solvation = 67.190342 kcal Electronic energy + Delta-G solvation = -30388.720479 eV Core-core repulsion = 26472.440389 eV Total energy + Delta-G solvation = -3916.280091 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.30021 -39.93437 -38.60895 -35.33707 -34.79883 -32.90435 -32.48779 -32.31839 -31.28595 -29.55265 -29.04006 -28.44311 -26.83226 -24.57252 -23.90266 -23.58772 -22.45107 -21.42590 -20.53863 -19.65774 -17.92039 -17.62342 -17.05608 -16.34373 -15.90257 -15.60187 -15.44048 -14.93659 -14.63887 -14.41871 -14.03754 -14.00642 -13.69476 -13.48533 -13.24704 -13.15908 -12.94985 -12.85026 -12.71593 -12.59824 -12.26735 -12.03167 -11.90472 -11.85353 -11.44313 -11.06750 -10.83392 -10.71405 -10.64659 -10.29573 -10.04003 -10.00973 -9.93059 -9.57129 -9.38197 -9.03975 -8.87107 -8.60667 -8.51516 -8.34937 -8.11769 -6.15625 -4.25000 0.37704 1.19153 1.24146 1.53624 3.34722 3.47240 3.48631 3.55787 3.78657 3.87961 4.13088 4.18787 4.50137 4.62667 4.76013 4.87220 4.89615 4.97478 5.05300 5.10362 5.12886 5.17166 5.33826 5.37061 5.45938 5.46918 5.57080 5.69779 5.73597 5.77387 5.84745 5.89458 5.95995 6.00165 6.05824 6.15255 6.22218 6.26142 6.49210 6.58052 6.61381 6.65546 6.84478 7.09963 7.18393 7.25434 7.58836 7.61994 7.96349 8.29564 8.30771 8.83687 9.11462 9.49736 10.94857 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009587 B = 0.005145 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.994024 B = 5440.807549 C = 7156.206761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.165 3.835 3 N -0.516 5.516 4 C 0.356 3.644 5 C 0.178 3.822 6 C -0.129 4.129 7 C -0.087 4.087 8 C -0.164 4.164 9 C 0.099 3.901 10 N -0.429 5.429 11 N -0.485 5.485 12 C 0.346 3.654 13 N -0.480 5.480 14 C 0.053 3.947 15 C -0.138 4.138 16 C 0.211 3.789 17 O -0.560 6.560 18 C -0.546 4.546 19 H 0.078 0.922 20 C 0.090 3.910 21 N -0.889 5.889 22 Si 0.853 3.147 23 H -0.290 1.290 24 H -0.297 1.297 25 H -0.213 1.213 26 C 0.058 3.942 27 C -0.163 4.163 28 C -0.098 4.098 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.146 0.854 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.160 0.840 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.358 0.642 41 H 0.265 0.735 42 H 0.060 0.940 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.023 13.267 -9.347 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.019 3.981 3 N -0.232 5.232 4 C 0.088 3.912 5 C 0.039 3.961 6 C -0.151 4.151 7 C -0.113 4.113 8 C -0.185 4.185 9 C -0.060 4.060 10 N -0.138 5.138 11 N -0.201 5.201 12 C 0.108 3.892 13 N -0.204 5.204 14 C -0.073 4.073 15 C -0.176 4.176 16 C 0.171 3.829 17 O -0.365 6.365 18 C -0.584 4.584 19 H 0.096 0.904 20 C -0.114 4.114 21 N -0.526 5.526 22 Si 0.680 3.320 23 H -0.217 1.217 24 H -0.225 1.225 25 H -0.135 1.135 26 C -0.067 4.067 27 C -0.169 4.169 28 C -0.155 4.155 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.164 0.836 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.178 0.822 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.204 0.796 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.113 0.887 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.946 13.059 -8.883 21.070 hybrid contribution 0.055 1.150 0.473 1.245 sum -13.891 14.210 -8.410 21.578 Atomic orbital electron populations 1.20754 0.87687 1.03865 1.03557 1.21356 0.97257 0.87056 0.92451 1.67921 1.08778 1.30540 1.15935 1.20554 0.85515 0.90924 0.94190 1.18805 0.89223 0.89453 0.98576 1.22126 1.02129 0.91810 0.98988 1.21532 0.94407 0.98151 0.97213 1.22327 0.95323 0.99926 1.00922 1.22882 1.00737 0.86967 0.95447 1.67683 1.07657 1.30221 1.08240 1.68769 1.41250 0.98179 1.11902 1.20492 0.90787 0.88543 0.89410 1.61860 1.26495 1.26384 1.05613 1.23024 0.94183 1.00138 0.89911 1.23221 0.94990 1.00448 0.98991 1.20091 0.89516 0.82466 0.90850 1.86656 1.31455 1.31904 1.86521 1.21282 1.33662 1.09920 0.93544 0.90420 1.24926 0.93589 0.96036 0.96883 1.69936 1.41874 1.34943 1.05797 0.87405 0.77718 0.87085 0.79786 1.21658 1.22450 1.13510 1.23322 0.90331 1.01719 0.91333 1.21375 0.94060 0.97992 1.03485 1.20613 0.99276 0.93103 1.02542 0.89836 0.90210 0.89829 0.83588 0.84503 0.84604 0.82244 0.91056 0.92656 0.90333 0.91494 0.79623 0.92534 0.92145 0.88743 0.90810 0.91541 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 9.83 36.01 0.35 -0.57 16 2 C 0.16 2.34 6.81 -82.36 -0.56 1.78 16 3 N -0.52 -8.31 9.35 -7.47 -0.07 -8.38 16 4 C 0.36 6.66 7.58 -157.00 -1.19 5.47 16 5 C 0.18 3.05 6.75 -82.95 -0.56 2.49 16 6 C -0.13 -1.69 9.60 -39.11 -0.38 -2.06 16 7 C -0.09 -0.90 10.17 -39.31 -0.40 -1.30 16 8 C -0.16 -1.70 10.11 -39.36 -0.40 -2.10 16 9 C 0.10 1.34 11.18 -17.57 -0.20 1.15 16 10 N -0.43 -7.75 10.03 -9.77 -0.10 -7.85 16 11 N -0.48 -10.12 8.89 -10.36 -0.09 -10.21 16 12 C 0.35 6.66 5.16 -154.87 -0.80 5.86 16 13 N -0.48 -9.51 4.15 -169.82 -0.70 -10.22 16 14 C 0.05 0.99 6.63 -2.30 -0.02 0.97 16 15 C -0.14 -2.75 6.22 -24.60 -0.15 -2.90 16 16 C 0.21 5.00 0.69 -89.95 -0.06 4.93 16 17 O -0.56 -13.36 10.51 -35.23 -0.37 -13.73 16 18 C -0.55 -15.06 8.72 -34.44 -0.30 -15.36 16 19 H 0.08 2.29 8.04 -52.48 -0.42 1.87 16 20 C 0.09 2.62 5.36 -17.82 -0.10 2.52 16 21 N -0.89 -27.10 13.96 55.43 0.77 -26.33 16 22 Si 0.85 22.69 24.13 -169.99 -4.10 18.59 16 23 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 24 H -0.30 -7.97 7.11 56.52 0.40 -7.56 16 25 H -0.21 -5.78 5.18 56.52 0.29 -5.49 16 26 C 0.06 1.37 4.20 -2.84 -0.01 1.35 16 27 C -0.16 -2.53 5.94 -104.07 -0.62 -3.15 16 28 C -0.10 -1.17 9.39 36.01 0.34 -0.83 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.60 6.16 -51.93 -0.32 0.28 16 32 H 0.15 1.71 7.50 -52.49 -0.39 1.31 16 33 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 34 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.05 1.10 7.46 -51.93 -0.39 0.71 16 38 H 0.08 1.56 8.04 -51.93 -0.42 1.14 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.36 7.50 9.07 45.56 0.41 7.91 16 41 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 42 H 0.06 1.55 4.61 -51.92 -0.24 1.31 16 43 H 0.09 2.31 7.54 -51.93 -0.39 1.92 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.07 0.59 6.32 -51.93 -0.33 0.26 16 46 H 0.09 1.12 7.38 -51.93 -0.38 0.74 16 LS Contribution 370.05 15.07 5.58 5.58 Total: -1.00 -35.45 370.05 -9.62 -45.07 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -5.50 Total: 9.25 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -5.04 Total: -1.76 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: -0.19 Total: -62.99 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.37 Total: -13.73 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.10 Total: 18.59 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.45 -9.62 -45.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591974463.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.265 kcal (2) G-P(sol) polarization free energy of solvation -35.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds