Wall clock time and date at job start Tue Mar 31 2020 23:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.32411 * 120.35115 * 2 1 4 4 C 1.32517 * 120.93715 * 180.02562 * 3 2 1 5 5 C 1.48415 * 119.17456 * 179.97438 * 4 3 2 6 6 C 1.39267 * 119.72102 * 359.73223 * 5 4 3 7 7 C 1.38489 * 119.06923 * 179.75560 * 6 5 4 8 8 C 1.38715 * 118.49775 * 0.50437 * 7 6 5 9 9 C 1.38360 * 119.35131 * 359.73051 * 8 7 6 10 10 N 1.31679 * 120.88838 * 0.02732 * 9 8 7 11 11 N 1.32557 * 121.65212 * 359.71882 * 4 3 2 12 12 C 1.32812 * 120.60998 * 0.56512 * 11 4 3 13 13 N 1.38553 * 120.49010 * 179.72051 * 12 11 4 14 14 C 1.47844 * 110.99599 * 294.29495 * 13 12 11 15 15 C 1.54903 * 104.79429 * 146.36612 * 14 13 12 16 16 C 1.55139 * 101.65219 * 322.92423 * 15 14 13 17 17 O 1.42902 * 110.70707 * 277.27217 * 16 15 14 18 18 C 1.50702 * 110.70775 * 154.03920 * 16 15 14 19 19 H 1.08003 * 119.99830 * 11.18981 * 18 16 15 20 20 C 1.37876 * 120.00186 * 191.18555 * 18 16 15 21 21 N 1.31516 * 120.00134 * 174.29847 * 20 18 16 22 22 Si 1.86799 * 119.99930 * 354.30643 * 20 18 16 23 23 H 1.48500 * 109.47468 * 94.01279 * 22 20 18 24 24 H 1.48501 * 109.47005 * 214.01010 * 22 20 18 25 25 H 1.48498 * 109.47239 * 334.00998 * 22 20 18 26 26 C 1.47442 * 111.00018 * 55.13278 * 13 12 11 27 27 C 1.38184 * 120.35962 * 180.02562 * 2 1 3 28 28 C 1.50711 * 120.75245 * 0.02562 * 27 2 1 29 29 H 1.09001 * 109.46827 * 269.98064 * 1 2 3 30 30 H 1.08997 * 109.46829 * 29.97755 * 1 2 3 31 31 H 1.08998 * 109.46977 * 149.98481 * 1 2 3 32 32 H 1.07998 * 120.46492 * 359.97438 * 6 5 4 33 33 H 1.08004 * 120.74998 * 180.21430 * 7 6 5 34 34 H 1.07997 * 120.32287 * 179.70819 * 8 7 6 35 35 H 1.07994 * 119.55161 * 180.02562 * 9 8 7 36 36 H 1.09006 * 110.37000 * 265.18820 * 14 13 12 37 37 H 1.08995 * 110.38043 * 27.53013 * 14 13 12 38 38 H 1.08997 * 110.99764 * 81.02119 * 15 14 13 39 39 H 1.08998 * 110.99110 * 204.79787 * 15 14 13 40 40 H 0.96698 * 114.00367 * 293.59776 * 17 16 15 41 41 H 0.96998 * 119.99878 * 180.02562 * 21 20 18 42 42 H 1.09009 * 109.88657 * 356.15105 * 26 13 12 43 43 H 1.09004 * 109.88512 * 117.33455 * 26 13 12 44 44 H 1.08998 * 109.46475 * 275.88619 * 28 27 2 45 45 H 1.08995 * 109.47586 * 35.88867 * 28 27 2 46 46 H 1.09005 * 109.46881 * 155.89324 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1761 1.1426 0.0000 4 6 3.5012 1.1562 -0.0005 5 6 4.2114 2.4594 -0.0011 6 6 3.4798 3.6444 -0.0067 7 6 4.1563 4.8528 -0.0020 8 6 5.5433 4.8349 -0.0025 9 6 6.2058 3.6202 -0.0020 10 7 5.5375 2.4857 -0.0016 11 7 4.2083 0.0350 0.0045 12 6 3.6023 -1.1468 -0.0010 13 7 4.3439 -2.3172 -0.0016 14 6 5.1117 -2.4571 -1.2572 15 6 6.4209 -3.1738 -0.8425 16 6 6.7014 -2.5364 0.5438 17 8 7.3617 -1.2776 0.3969 18 6 7.5144 -3.4688 1.4044 19 1 7.9683 -4.3471 0.9696 20 6 7.6788 -3.2007 2.7468 21 7 8.2920 -4.0696 3.5206 22 14 7.0305 -1.6035 3.4665 23 1 5.6701 -1.8256 4.0189 24 1 7.9362 -1.1455 4.5506 25 1 6.9699 -0.5696 2.4023 26 6 5.2872 -2.3455 1.1312 27 6 2.2055 -1.1923 -0.0005 28 6 1.4774 -2.5119 -0.0017 29 1 -0.3633 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5141 32 1 2.4001 3.6213 -0.0111 33 1 3.6161 5.7881 -0.0027 34 1 6.1006 5.7600 -0.0037 35 1 7.2856 3.6025 -0.0020 36 1 4.5584 -3.0631 -1.9748 37 1 5.3329 -1.4764 -1.6782 38 1 6.2663 -4.2491 -0.7538 39 1 7.2256 -2.9538 -1.5440 40 1 8.2546 -1.3420 0.0313 41 1 8.4073 -3.8811 4.4651 42 1 5.2372 -1.4044 1.6791 43 1 5.0457 -3.1764 1.7941 44 1 1.2092 -2.7797 1.0203 45 1 0.5731 -2.4275 -0.6044 46 1 2.1234 -3.2829 -0.4217 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591974463.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:26 Heat of formation + Delta-G solvation = 40.543567 kcal Electronic energy + Delta-G solvation = -30389.875970 eV Core-core repulsion = 26472.440389 eV Total energy + Delta-G solvation = -3917.435581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.54984 -41.00020 -40.17678 -37.03068 -35.89012 -34.57292 -34.31998 -33.47031 -32.28785 -31.13472 -30.30942 -29.93959 -27.96926 -26.49888 -24.97125 -24.63987 -23.83167 -22.52023 -21.97995 -21.55312 -19.26907 -19.16910 -18.66125 -17.59293 -17.17628 -16.95113 -16.65916 -16.48760 -16.25026 -15.72292 -15.47834 -15.22389 -15.02665 -14.93725 -14.81784 -14.33757 -14.21058 -14.03121 -13.97857 -13.81703 -13.56936 -13.42031 -13.32887 -12.97938 -12.79125 -12.78457 -12.65979 -12.41335 -12.22488 -11.99212 -11.90131 -11.37468 -10.98562 -10.92374 -10.86724 -10.63187 -10.45339 -10.27807 -10.21996 -9.80924 -9.56570 -8.45533 -6.54308 -0.73724 -0.05065 0.29460 0.50178 1.16577 1.25777 1.60106 2.26374 2.40103 2.43768 2.51596 2.91454 3.01024 3.01375 3.51919 3.67296 3.70127 3.83530 3.90191 3.97939 4.05640 4.08345 4.13168 4.17955 4.26053 4.32727 4.41431 4.54772 4.59081 4.64734 4.74031 4.80462 4.80956 4.86450 4.93888 4.96504 5.04891 5.13823 5.16747 5.17271 5.23860 5.31193 5.49281 5.51547 5.57889 5.68470 5.96275 6.05266 6.08634 6.56652 6.89703 7.12372 7.16987 7.32051 8.68987 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009587 B = 0.005145 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.994024 B = 5440.807549 C = 7156.206761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.165 3.835 3 N -0.513 5.513 4 C 0.336 3.664 5 C 0.137 3.863 6 C -0.126 4.126 7 C -0.077 4.077 8 C -0.144 4.144 9 C 0.076 3.924 10 N -0.486 5.486 11 N -0.527 5.527 12 C 0.308 3.692 13 N -0.468 5.468 14 C 0.062 3.938 15 C -0.131 4.131 16 C 0.207 3.793 17 O -0.569 6.569 18 C -0.538 4.538 19 H 0.053 0.947 20 C 0.053 3.947 21 N -0.927 5.927 22 Si 0.911 3.089 23 H -0.293 1.293 24 H -0.298 1.298 25 H -0.226 1.226 26 C 0.068 3.932 27 C -0.163 4.163 28 C -0.094 4.094 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.157 0.843 33 H 0.183 0.817 34 H 0.179 0.821 35 H 0.170 0.830 36 H 0.105 0.895 37 H 0.039 0.961 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.368 0.632 41 H 0.267 0.733 42 H 0.035 0.965 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.105 0.895 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.910 15.609 -10.589 25.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.018 3.982 3 N -0.228 5.228 4 C 0.068 3.932 5 C 0.000 4.000 6 C -0.148 4.148 7 C -0.102 4.102 8 C -0.164 4.164 9 C -0.083 4.083 10 N -0.196 5.196 11 N -0.243 5.243 12 C 0.071 3.929 13 N -0.191 5.191 14 C -0.064 4.064 15 C -0.169 4.169 16 C 0.166 3.834 17 O -0.375 6.375 18 C -0.576 4.576 19 H 0.072 0.928 20 C -0.148 4.148 21 N -0.566 5.566 22 Si 0.739 3.261 23 H -0.221 1.221 24 H -0.226 1.226 25 H -0.149 1.149 26 C -0.058 4.058 27 C -0.169 4.169 28 C -0.152 4.152 29 H 0.118 0.882 30 H 0.110 0.890 31 H 0.128 0.872 32 H 0.175 0.825 33 H 0.200 0.800 34 H 0.197 0.803 35 H 0.187 0.813 36 H 0.123 0.877 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.215 0.785 41 H 0.077 0.923 42 H 0.053 0.947 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.123 0.877 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.839 15.398 -10.143 24.971 hybrid contribution 0.940 0.523 0.793 1.337 sum -15.899 15.921 -9.350 24.366 Atomic orbital electron populations 1.20945 0.83542 1.05792 1.05058 1.22271 0.99615 0.86028 0.90239 1.68051 1.07691 1.31305 1.15795 1.21049 0.86545 0.91156 0.94437 1.19007 0.89445 0.90140 1.01443 1.22311 1.02603 0.91606 0.98279 1.22068 0.94538 0.98693 0.94946 1.22749 0.95719 1.00107 0.97830 1.23270 1.01488 0.87472 0.96026 1.67530 1.08805 1.32876 1.10357 1.68636 1.42878 0.99256 1.13570 1.20736 0.92208 0.87952 0.92030 1.61852 1.25127 1.27468 1.04682 1.23011 0.93747 0.99568 0.90084 1.23132 0.96477 1.00286 0.96981 1.20057 0.89009 0.81842 0.92455 1.86643 1.32324 1.31793 1.86776 1.21555 1.32850 1.09448 0.93750 0.92831 1.25425 0.94093 0.97777 0.97533 1.70014 1.43947 1.36434 1.06245 0.86516 0.76771 0.84304 0.78516 1.22072 1.22591 1.14869 1.22950 0.91109 0.99366 0.92411 1.21766 0.92669 1.00220 1.02207 1.20710 1.00136 0.90680 1.03627 0.88237 0.88999 0.87181 0.82528 0.80013 0.80343 0.81254 0.87667 0.94248 0.90192 0.89950 0.78463 0.92339 0.94693 0.90639 0.90075 0.87701 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 9.83 71.24 0.70 -0.69 16 2 C 0.17 4.39 6.81 42.46 0.29 4.67 16 3 N -0.51 -16.17 9.35 -177.54 -1.66 -17.83 16 4 C 0.34 12.84 7.58 137.60 1.04 13.88 16 5 C 0.14 4.77 6.75 41.98 0.28 5.06 16 6 C -0.13 -3.14 9.60 22.58 0.22 -2.92 16 7 C -0.08 -1.33 10.17 22.44 0.23 -1.10 16 8 C -0.14 -2.57 10.11 22.41 0.23 -2.34 16 9 C 0.08 2.06 11.18 84.74 0.95 3.00 16 10 N -0.49 -18.15 10.03 -184.82 -1.85 -20.00 16 11 N -0.53 -22.74 8.89 -186.69 -1.66 -24.40 16 12 C 0.31 11.99 5.16 133.24 0.69 12.67 16 13 N -0.47 -18.77 4.15 -691.20 -2.87 -21.63 16 14 C 0.06 2.27 6.63 86.77 0.58 2.85 16 15 C -0.13 -5.20 6.22 31.98 0.20 -5.01 16 16 C 0.21 10.03 0.69 -10.36 -0.01 10.03 16 17 O -0.57 -27.96 10.51 -148.98 -1.57 -29.53 16 18 C -0.54 -30.54 8.72 25.60 0.22 -30.32 16 19 H 0.05 3.26 8.04 -2.91 -0.02 3.23 16 20 C 0.05 3.14 5.36 84.65 0.45 3.59 16 21 N -0.93 -58.11 13.96 21.45 0.30 -57.81 16 22 Si 0.91 49.40 24.13 68.60 1.66 51.05 16 23 H -0.29 -15.89 7.11 99.48 0.71 -15.18 16 24 H -0.30 -16.02 7.11 99.48 0.71 -15.31 16 25 H -0.23 -12.65 5.18 99.48 0.51 -12.13 16 26 C 0.07 3.30 4.20 86.64 0.36 3.66 16 27 C -0.16 -4.87 5.94 -19.51 -0.12 -4.99 16 28 C -0.09 -2.02 9.39 71.24 0.67 -1.35 16 29 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.14 16 31 H 0.11 1.02 6.16 -2.39 -0.01 1.01 16 32 H 0.16 3.39 7.50 -2.91 -0.02 3.37 16 33 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 34 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 35 H 0.17 3.85 8.06 -2.91 -0.02 3.83 16 36 H 0.11 3.15 8.14 -2.38 -0.02 3.13 16 37 H 0.04 1.58 7.46 -2.39 -0.02 1.56 16 38 H 0.08 3.16 8.04 -2.39 -0.02 3.14 16 39 H 0.08 2.99 8.14 -2.39 -0.02 2.98 16 40 H 0.37 15.85 9.07 -74.06 -0.67 15.18 16 41 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 42 H 0.03 1.86 4.61 -2.38 -0.01 1.85 16 43 H 0.08 3.85 7.54 -2.38 -0.02 3.83 16 44 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.10 1.41 6.32 -2.39 -0.02 1.39 16 46 H 0.07 1.80 7.38 -2.38 -0.02 1.79 16 Total: -1.00 -83.17 370.05 -0.51 -83.68 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 0.16 Total: 25.76 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 6.98 Total: 10.71 kcal Atomic # 7 Polarization: -133.94 SS G_CDS: -7.74 Total: -141.68 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -1.57 Total: -29.53 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 1.66 Total: 51.05 kcal Total: -83.17 -0.51 -83.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591974463.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.219 kcal (2) G-P(sol) polarization free energy of solvation -83.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds