Wall clock time and date at job start Tue Mar 31 2020 23:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32427 * 120.35099 * 2 1 4 4 C 1.32561 * 120.92687 * 180.28251 * 3 2 1 5 5 C 1.48318 * 119.17431 * 179.71816 * 4 3 2 6 6 C 1.39803 * 120.54404 * 359.72183 * 5 4 3 7 7 C 1.38403 * 118.31028 * 180.02562 * 6 5 4 8 8 C 1.38318 * 119.28630 * 0.02562 * 7 6 5 9 9 N 1.31898 * 121.03478 * 359.97438 * 8 7 6 10 10 C 1.31734 * 121.85698 * 0.02562 * 9 8 7 11 11 N 1.32586 * 121.64196 * 359.43448 * 4 3 2 12 12 C 1.32825 * 120.60105 * 0.28378 * 11 4 3 13 13 N 1.38554 * 120.48169 * 179.97438 * 12 11 4 14 14 C 1.47841 * 110.99816 * 120.84203 * 13 12 11 15 15 C 1.54908 * 104.79607 * 213.63767 * 14 13 12 16 16 C 1.55135 * 101.65189 * 37.06769 * 15 14 13 17 17 O 1.42899 * 110.85409 * 82.80461 * 16 15 14 18 18 C 1.50705 * 110.70732 * 205.96481 * 16 15 14 19 19 H 1.07997 * 120.00265 * 113.60251 * 18 16 15 20 20 C 1.37880 * 120.00113 * 293.60281 * 18 16 15 21 21 N 1.31514 * 119.99545 * 359.97438 * 20 18 16 22 22 Si 1.86796 * 119.99977 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47265 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46849 * 120.00298 * 22 20 18 25 25 H 1.48504 * 109.47192 * 239.99588 * 22 20 18 26 26 C 1.47445 * 111.00011 * 359.97438 * 13 12 11 27 27 C 1.38174 * 120.34787 * 179.73167 * 2 1 3 28 28 C 1.50698 * 120.75633 * 0.02562 * 27 2 1 29 29 H 1.08995 * 109.46887 * 270.26574 * 1 2 3 30 30 H 1.09003 * 109.46912 * 30.26879 * 1 2 3 31 31 H 1.08999 * 109.47081 * 150.26667 * 1 2 3 32 32 H 1.08006 * 120.84447 * 0.02562 * 6 5 4 33 33 H 1.08004 * 120.35814 * 180.02562 * 7 6 5 34 34 H 1.08004 * 119.48924 * 180.02562 * 8 7 6 35 35 H 1.07998 * 119.70866 * 179.72044 * 10 9 8 36 36 H 1.09001 * 110.37711 * 332.46001 * 14 13 12 37 37 H 1.09000 * 110.37515 * 94.80863 * 14 13 12 38 38 H 1.09007 * 110.98995 * 278.97848 * 15 14 13 39 39 H 1.08993 * 111.02823 * 155.17652 * 15 14 13 40 40 H 0.96703 * 114.00593 * 66.31369 * 17 16 15 41 41 H 0.97006 * 119.99867 * 180.02562 * 21 20 18 42 42 H 1.08996 * 109.88885 * 242.66618 * 26 13 12 43 43 H 1.08999 * 109.88917 * 3.69027 * 26 13 12 44 44 H 1.08993 * 109.47118 * 269.98291 * 28 27 2 45 45 H 1.09001 * 109.46960 * 29.98018 * 28 27 2 46 46 H 1.08998 * 109.47206 * 149.97930 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1762 1.1428 0.0000 4 6 3.5017 1.1561 -0.0056 5 6 4.2117 2.4583 -0.0118 6 6 3.4946 3.6584 -0.0175 7 6 4.2039 4.8469 -0.0236 8 6 5.5866 4.8096 -0.0245 9 7 6.2359 3.6615 -0.0190 10 6 5.6042 2.5055 -0.0130 11 7 4.2086 0.0344 -0.0003 12 6 3.6019 -1.1471 0.0053 13 7 4.3431 -2.3178 0.0103 14 6 4.0291 -3.1385 1.1992 15 6 5.3631 -3.8379 1.5607 16 6 6.3963 -2.7249 1.2439 17 8 6.5093 -1.8099 2.3357 18 6 7.7390 -3.3231 0.9116 19 1 8.1414 -3.2262 -0.0859 20 6 8.4538 -3.9942 1.8810 21 7 7.9640 -4.1118 3.0959 22 14 10.1177 -4.7363 1.4689 23 1 10.4409 -4.4668 0.0448 24 1 11.1591 -4.1288 2.3360 25 1 10.0763 -6.2029 1.6986 26 6 5.7888 -2.0279 0.0079 27 6 2.2052 -1.1924 0.0056 28 6 1.4770 -2.5117 0.0112 29 1 -0.3633 0.0048 1.0276 30 1 -0.3633 0.8876 -0.5180 31 1 -0.3633 -0.8924 -0.5097 32 1 2.4145 3.6582 -0.0171 33 1 3.6834 5.7932 -0.0278 34 1 6.1434 5.7350 -0.0288 35 1 6.1707 1.5860 -0.0132 36 1 3.6982 -2.5043 2.0217 37 1 3.2657 -3.8785 0.9587 38 1 5.5276 -4.7136 0.9327 39 1 5.3902 -4.1067 2.6166 40 1 6.8859 -2.1984 3.1372 41 1 8.4670 -4.5836 3.7781 42 1 6.2442 -2.4208 -0.9011 43 1 5.9513 -0.9518 0.0686 44 1 1.3013 -2.8254 1.0401 45 1 0.5223 -2.4020 -0.5032 46 1 2.0806 -3.2621 -0.4994 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591976426.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:30 Heat of formation + Delta-G solvation = 50.204004 kcal Electronic energy + Delta-G solvation = -29932.814192 eV Core-core repulsion = 26015.797519 eV Total energy + Delta-G solvation = -3917.016673 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.28711 -39.89927 -38.49625 -35.33911 -34.94388 -32.92392 -32.15139 -32.09594 -31.32284 -29.43054 -29.29108 -27.94942 -26.65275 -24.85158 -23.86103 -23.58761 -22.14754 -21.38132 -20.45454 -19.60941 -17.66100 -17.48653 -17.06637 -16.60394 -15.80784 -15.48030 -15.35227 -14.94880 -14.50278 -14.36336 -14.12618 -13.92180 -13.80958 -13.58327 -13.31477 -13.05638 -12.98151 -12.86599 -12.62182 -12.26276 -12.17342 -11.94903 -11.83499 -11.64827 -11.27893 -11.16357 -10.86572 -10.71753 -10.49936 -10.43109 -10.27955 -10.08537 -9.99507 -9.54874 -9.50541 -9.34364 -8.89487 -8.69746 -8.59436 -8.16609 -7.90672 -6.26528 -4.33293 0.44259 1.26498 1.33379 1.66371 3.20138 3.29332 3.33908 3.59594 3.72720 3.94296 4.16546 4.24757 4.32070 4.53907 4.84203 4.88020 4.94859 5.00818 5.01727 5.05780 5.13755 5.28773 5.35873 5.43233 5.47368 5.60423 5.68551 5.74040 5.77923 5.79405 5.89363 5.91997 6.05023 6.07993 6.15439 6.18864 6.27720 6.48197 6.61713 6.69356 6.82443 6.91846 6.96450 7.29180 7.38518 7.44588 7.55221 7.76959 7.97666 8.05829 8.34859 8.68625 9.35163 9.49154 10.81119 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010544 B = 0.003986 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.847235 B = 7022.426658 C = 9254.901249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.181 3.819 3 N -0.540 5.540 4 C 0.377 3.623 5 C -0.089 4.089 6 C -0.032 4.032 7 C -0.188 4.188 8 C 0.108 3.892 9 N -0.488 5.488 10 C 0.152 3.848 11 N -0.536 5.536 12 C 0.375 3.625 13 N -0.466 5.466 14 C 0.050 3.950 15 C -0.134 4.134 16 C 0.242 3.758 17 O -0.586 6.586 18 C -0.530 4.530 19 H 0.064 0.936 20 C 0.071 3.929 21 N -0.900 5.900 22 Si 0.901 3.099 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.283 1.283 26 C 0.043 3.957 27 C -0.212 4.212 28 C -0.100 4.100 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.145 0.855 33 H 0.137 0.863 34 H 0.156 0.844 35 H 0.172 0.828 36 H 0.048 0.952 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.383 0.617 41 H 0.267 0.733 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.369 9.413 -4.614 17.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.037 3.963 3 N -0.257 5.257 4 C 0.110 3.890 5 C -0.093 4.093 6 C -0.059 4.059 7 C -0.208 4.208 8 C -0.049 4.049 9 N -0.196 5.196 10 C -0.006 4.006 11 N -0.255 5.255 12 C 0.134 3.866 13 N -0.182 5.182 14 C -0.074 4.074 15 C -0.173 4.173 16 C 0.201 3.799 17 O -0.396 6.396 18 C -0.569 4.569 19 H 0.083 0.917 20 C -0.131 4.131 21 N -0.540 5.540 22 Si 0.729 3.271 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.209 1.209 26 C -0.083 4.083 27 C -0.219 4.219 28 C -0.158 4.158 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.163 0.837 33 H 0.155 0.845 34 H 0.173 0.827 35 H 0.189 0.811 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.235 0.765 41 H 0.077 0.923 42 H 0.102 0.898 43 H 0.115 0.885 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.311 10.218 -5.319 17.604 hybrid contribution 0.013 -1.336 0.842 1.579 sum -13.298 8.883 -4.477 16.607 Atomic orbital electron populations 1.20754 0.88139 1.03701 1.03382 1.21227 0.96990 0.87184 0.90868 1.68047 1.08718 1.30071 1.18840 1.20703 0.85924 0.90939 0.91415 1.19108 0.94271 0.90216 1.05739 1.21706 1.01283 0.90752 0.92191 1.22078 0.95692 0.98904 1.04091 1.22955 0.91932 0.96563 0.93468 1.67848 1.40749 0.98259 1.12751 1.23200 0.90730 0.96632 0.90082 1.68237 1.40531 0.97844 1.18929 1.20178 0.89935 0.89102 0.87401 1.60479 1.08734 1.11210 1.37793 1.23264 1.00692 0.95394 0.88081 1.23291 0.92151 0.99615 1.02215 1.19615 0.92551 0.84489 0.83250 1.86132 1.86424 1.41508 1.25574 1.21608 1.03146 1.34483 0.97629 0.91734 1.24996 0.98239 0.95018 0.94856 1.69591 1.38619 1.43218 1.02575 0.86382 0.83321 0.78622 0.78772 1.19570 1.20807 1.20891 1.23114 0.82038 1.03441 0.99692 1.20949 0.93611 0.97919 1.09460 1.20739 0.99504 0.93233 1.02326 0.89961 0.90312 0.90000 0.83698 0.84514 0.82668 0.81056 0.93387 0.90437 0.91191 0.90076 0.76515 0.92272 0.89797 0.88536 0.91170 0.91403 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 9.83 36.01 0.35 -0.61 16 2 C 0.18 2.56 6.81 -82.36 -0.56 2.00 16 3 N -0.54 -8.52 9.46 -7.48 -0.07 -8.59 16 4 C 0.38 6.58 7.56 -156.98 -1.19 5.39 16 5 C -0.09 -1.40 5.89 -104.76 -0.62 -2.02 16 6 C -0.03 -0.40 9.68 -38.94 -0.38 -0.78 16 7 C -0.19 -1.97 10.10 -39.49 -0.40 -2.36 16 8 C 0.11 1.27 11.17 -17.49 -0.20 1.07 16 9 N -0.49 -7.49 10.35 -12.96 -0.13 -7.63 16 10 C 0.15 2.51 10.73 -17.19 -0.18 2.32 16 11 N -0.54 -10.33 7.14 -10.37 -0.07 -10.40 16 12 C 0.38 6.95 6.15 -154.86 -0.95 6.00 16 13 N -0.47 -8.98 4.69 -169.80 -0.80 -9.78 16 14 C 0.05 0.93 5.14 -2.30 -0.01 0.92 16 15 C -0.13 -2.93 5.67 -24.59 -0.14 -3.06 16 16 C 0.24 5.86 0.86 -89.93 -0.08 5.79 16 17 O -0.59 -15.28 13.09 -35.23 -0.46 -15.74 16 18 C -0.53 -13.92 8.21 -34.44 -0.28 -14.21 16 19 H 0.06 1.70 7.53 -52.49 -0.40 1.30 16 20 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 21 N -0.90 -23.49 10.69 55.43 0.59 -22.90 16 22 Si 0.90 20.45 29.54 -169.99 -5.02 15.42 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 26 C 0.04 0.94 6.12 -2.81 -0.02 0.92 16 27 C -0.21 -3.23 5.77 -104.08 -0.60 -3.83 16 28 C -0.10 -1.18 7.85 36.00 0.28 -0.90 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.62 6.06 -51.93 -0.31 0.30 16 32 H 0.15 1.64 7.60 -52.48 -0.40 1.24 16 33 H 0.14 0.96 8.06 -52.48 -0.42 0.53 16 34 H 0.16 1.30 8.06 -52.48 -0.42 0.87 16 35 H 0.17 3.06 7.52 -52.49 -0.39 2.66 16 36 H 0.05 0.93 7.79 -51.93 -0.40 0.52 16 37 H 0.08 1.20 6.35 -51.93 -0.33 0.87 16 38 H 0.07 1.54 8.04 -51.92 -0.42 1.12 16 39 H 0.08 1.87 7.76 -51.93 -0.40 1.47 16 40 H 0.38 10.18 6.98 45.56 0.32 10.50 16 41 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 42 H 0.08 1.84 7.63 -51.93 -0.40 1.44 16 43 H 0.10 2.22 5.87 -51.93 -0.30 1.92 16 44 H 0.07 0.77 7.87 -51.93 -0.41 0.36 16 45 H 0.07 0.61 6.06 -51.93 -0.31 0.30 16 46 H 0.08 1.01 6.64 -51.93 -0.34 0.66 16 LS Contribution 369.52 15.07 5.57 5.57 Total: -1.00 -29.64 369.52 -10.79 -40.43 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -5.34 Total: 15.23 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -5.06 Total: -1.61 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: -0.48 Total: -59.30 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.46 Total: -15.74 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.64 -10.79 -40.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591976426.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.636 kcal (2) G-P(sol) polarization free energy of solvation -29.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds