Wall clock time and date at job start Tue Mar 31 2020 23:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.32427 * 120.35099 * 2 1 4 4 C 1.32561 * 120.92687 * 180.28251 * 3 2 1 5 5 C 1.48318 * 119.17431 * 179.71816 * 4 3 2 6 6 C 1.39803 * 120.54404 * 359.72183 * 5 4 3 7 7 C 1.38403 * 118.31028 * 180.02562 * 6 5 4 8 8 C 1.38318 * 119.28630 * 0.02562 * 7 6 5 9 9 N 1.31898 * 121.03478 * 359.97438 * 8 7 6 10 10 C 1.31734 * 121.85698 * 0.02562 * 9 8 7 11 11 N 1.32586 * 121.64196 * 359.43448 * 4 3 2 12 12 C 1.32825 * 120.60105 * 0.28378 * 11 4 3 13 13 N 1.38554 * 120.48169 * 179.97438 * 12 11 4 14 14 C 1.47841 * 110.99816 * 120.84203 * 13 12 11 15 15 C 1.54908 * 104.79607 * 213.63767 * 14 13 12 16 16 C 1.55135 * 101.65189 * 37.06769 * 15 14 13 17 17 O 1.42899 * 110.85409 * 82.80461 * 16 15 14 18 18 C 1.50705 * 110.70732 * 205.96481 * 16 15 14 19 19 H 1.07997 * 120.00265 * 113.60251 * 18 16 15 20 20 C 1.37880 * 120.00113 * 293.60281 * 18 16 15 21 21 N 1.31514 * 119.99545 * 359.97438 * 20 18 16 22 22 Si 1.86796 * 119.99977 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47265 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46849 * 120.00298 * 22 20 18 25 25 H 1.48504 * 109.47192 * 239.99588 * 22 20 18 26 26 C 1.47445 * 111.00011 * 359.97438 * 13 12 11 27 27 C 1.38174 * 120.34787 * 179.73167 * 2 1 3 28 28 C 1.50698 * 120.75633 * 0.02562 * 27 2 1 29 29 H 1.08995 * 109.46887 * 270.26574 * 1 2 3 30 30 H 1.09003 * 109.46912 * 30.26879 * 1 2 3 31 31 H 1.08999 * 109.47081 * 150.26667 * 1 2 3 32 32 H 1.08006 * 120.84447 * 0.02562 * 6 5 4 33 33 H 1.08004 * 120.35814 * 180.02562 * 7 6 5 34 34 H 1.08004 * 119.48924 * 180.02562 * 8 7 6 35 35 H 1.07998 * 119.70866 * 179.72044 * 10 9 8 36 36 H 1.09001 * 110.37711 * 332.46001 * 14 13 12 37 37 H 1.09000 * 110.37515 * 94.80863 * 14 13 12 38 38 H 1.09007 * 110.98995 * 278.97848 * 15 14 13 39 39 H 1.08993 * 111.02823 * 155.17652 * 15 14 13 40 40 H 0.96703 * 114.00593 * 66.31369 * 17 16 15 41 41 H 0.97006 * 119.99867 * 180.02562 * 21 20 18 42 42 H 1.08996 * 109.88885 * 242.66618 * 26 13 12 43 43 H 1.08999 * 109.88917 * 3.69027 * 26 13 12 44 44 H 1.08993 * 109.47118 * 269.98291 * 28 27 2 45 45 H 1.09001 * 109.46960 * 29.98018 * 28 27 2 46 46 H 1.08998 * 109.47206 * 149.97930 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1762 1.1428 0.0000 4 6 3.5017 1.1561 -0.0056 5 6 4.2117 2.4583 -0.0118 6 6 3.4946 3.6584 -0.0175 7 6 4.2039 4.8469 -0.0236 8 6 5.5866 4.8096 -0.0245 9 7 6.2359 3.6615 -0.0190 10 6 5.6042 2.5055 -0.0130 11 7 4.2086 0.0344 -0.0003 12 6 3.6019 -1.1471 0.0053 13 7 4.3431 -2.3178 0.0103 14 6 4.0291 -3.1385 1.1992 15 6 5.3631 -3.8379 1.5607 16 6 6.3963 -2.7249 1.2439 17 8 6.5093 -1.8099 2.3357 18 6 7.7390 -3.3231 0.9116 19 1 8.1414 -3.2262 -0.0859 20 6 8.4538 -3.9942 1.8810 21 7 7.9640 -4.1118 3.0959 22 14 10.1177 -4.7363 1.4689 23 1 10.4409 -4.4668 0.0448 24 1 11.1591 -4.1288 2.3360 25 1 10.0763 -6.2029 1.6986 26 6 5.7888 -2.0279 0.0079 27 6 2.2052 -1.1924 0.0056 28 6 1.4770 -2.5117 0.0112 29 1 -0.3633 0.0048 1.0276 30 1 -0.3633 0.8876 -0.5180 31 1 -0.3633 -0.8924 -0.5097 32 1 2.4145 3.6582 -0.0171 33 1 3.6834 5.7932 -0.0278 34 1 6.1434 5.7350 -0.0288 35 1 6.1707 1.5860 -0.0132 36 1 3.6982 -2.5043 2.0217 37 1 3.2657 -3.8785 0.9587 38 1 5.5276 -4.7136 0.9327 39 1 5.3902 -4.1067 2.6166 40 1 6.8859 -2.1984 3.1372 41 1 8.4670 -4.5836 3.7781 42 1 6.2442 -2.4208 -0.9011 43 1 5.9513 -0.9518 0.0686 44 1 1.3013 -2.8254 1.0401 45 1 0.5223 -2.4020 -0.5032 46 1 2.0806 -3.2621 -0.4994 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591976426.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:29 Heat of formation + Delta-G solvation = 30.975473 kcal Electronic energy + Delta-G solvation = -29933.648004 eV Core-core repulsion = 26015.797519 eV Total energy + Delta-G solvation = -3917.850485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.55218 -41.00639 -40.04884 -37.07865 -36.06166 -34.31359 -34.16031 -33.27990 -32.36688 -30.90786 -30.59900 -29.44932 -27.81174 -26.66150 -24.94200 -24.70806 -23.52077 -22.53714 -22.00320 -21.31355 -19.29165 -18.77335 -18.63018 -17.77930 -16.98053 -16.91663 -16.77215 -16.52914 -16.00945 -15.83974 -15.59128 -15.13463 -14.95055 -14.83268 -14.51055 -14.10353 -14.05595 -13.99066 -13.91508 -13.68384 -13.61667 -13.42793 -13.21745 -12.93779 -12.88221 -12.71334 -12.62104 -12.28766 -12.15417 -12.10683 -11.87807 -11.51651 -11.21315 -11.14872 -10.67543 -10.57451 -10.55756 -10.20222 -10.11639 -9.92593 -9.25296 -8.26263 -6.40452 -0.69487 0.08866 0.24091 0.54230 1.37580 1.41556 1.52169 2.34236 2.37894 2.59116 2.72690 2.98070 3.00139 3.09368 3.51057 3.63725 3.79701 3.90532 3.93693 3.97833 4.01286 4.09084 4.17448 4.21533 4.31147 4.33597 4.54166 4.56103 4.66718 4.71332 4.74287 4.79498 4.85570 4.95255 5.03717 5.06448 5.11243 5.14089 5.21669 5.22254 5.32209 5.45676 5.49853 5.55124 5.67960 5.75609 6.02287 6.04128 6.17733 6.63082 6.92044 7.09112 7.30364 7.41096 8.80046 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010544 B = 0.003986 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.847235 B = 7022.426658 C = 9254.901249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.177 3.823 3 N -0.535 5.535 4 C 0.359 3.641 5 C -0.109 4.109 6 C -0.032 4.032 7 C -0.165 4.165 8 C 0.105 3.895 9 N -0.516 5.516 10 C 0.128 3.872 11 N -0.569 5.569 12 C 0.339 3.661 13 N -0.461 5.461 14 C 0.064 3.936 15 C -0.125 4.125 16 C 0.228 3.772 17 O -0.598 6.598 18 C -0.557 4.557 19 H 0.054 0.946 20 C 0.033 3.967 21 N -0.913 5.913 22 Si 0.960 3.040 23 H -0.273 1.273 24 H -0.281 1.281 25 H -0.273 1.273 26 C 0.052 3.948 27 C -0.209 4.209 28 C -0.099 4.099 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.161 0.839 33 H 0.185 0.815 34 H 0.194 0.806 35 H 0.138 0.862 36 H 0.037 0.963 37 H 0.116 0.884 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.377 0.623 41 H 0.271 0.729 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.102 0.898 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.327 10.592 -4.998 20.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.033 3.967 3 N -0.252 5.252 4 C 0.092 3.908 5 C -0.113 4.113 6 C -0.059 4.059 7 C -0.184 4.184 8 C -0.052 4.052 9 N -0.225 5.225 10 C -0.030 4.030 11 N -0.289 5.289 12 C 0.099 3.901 13 N -0.177 5.177 14 C -0.061 4.061 15 C -0.164 4.164 16 C 0.187 3.813 17 O -0.408 6.408 18 C -0.595 4.595 19 H 0.072 0.928 20 C -0.167 4.167 21 N -0.553 5.553 22 Si 0.786 3.214 23 H -0.197 1.197 24 H -0.207 1.207 25 H -0.199 1.199 26 C -0.075 4.075 27 C -0.216 4.216 28 C -0.157 4.157 29 H 0.118 0.882 30 H 0.107 0.893 31 H 0.125 0.875 32 H 0.179 0.821 33 H 0.202 0.798 34 H 0.211 0.789 35 H 0.156 0.844 36 H 0.055 0.945 37 H 0.134 0.866 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.227 0.773 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.121 0.879 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.293 11.398 -5.711 20.688 hybrid contribution 0.882 -1.525 0.968 2.010 sum -15.411 9.873 -4.742 18.907 Atomic orbital electron populations 1.20925 0.84088 1.05483 1.04920 1.22120 0.99345 0.86234 0.89032 1.68153 1.07755 1.30902 1.18424 1.21066 0.86793 0.91034 0.91900 1.19206 0.93976 0.90950 1.07180 1.21966 1.02041 0.90250 0.91621 1.22554 0.95111 0.99914 1.00804 1.23665 0.93190 0.96430 0.91892 1.67786 1.41909 0.98979 1.13815 1.22768 0.91247 0.96300 0.92692 1.68152 1.42023 0.98843 1.19841 1.20479 0.91486 0.88567 0.89596 1.60566 1.06782 1.12211 1.38180 1.23197 0.99542 0.95523 0.87793 1.23061 0.93493 0.98832 1.01035 1.19837 0.92840 0.85233 0.83350 1.86137 1.86401 1.42445 1.25784 1.21836 1.04650 1.35522 0.97513 0.92815 1.25644 1.01128 0.95191 0.94755 1.69662 1.39528 1.43178 1.02981 0.85473 0.79474 0.78191 0.78262 1.19743 1.20683 1.19882 1.22829 0.84322 1.02056 0.98303 1.21359 0.92165 1.00190 1.07847 1.20849 1.00465 0.90850 1.03499 0.88235 0.89266 0.87505 0.82120 0.79758 0.78926 0.84422 0.94465 0.86597 0.91609 0.91677 0.77274 0.91979 0.90612 0.90264 0.89849 0.87913 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 9.83 71.24 0.70 -0.72 16 2 C 0.18 4.65 6.81 42.46 0.29 4.94 16 3 N -0.54 -16.44 9.46 -177.58 -1.68 -18.12 16 4 C 0.36 12.94 7.56 137.55 1.04 13.98 16 5 C -0.11 -3.54 5.89 -19.95 -0.12 -3.66 16 6 C -0.03 -0.75 9.68 22.69 0.22 -0.53 16 7 C -0.16 -2.93 10.10 22.33 0.23 -2.71 16 8 C 0.11 2.28 11.17 84.70 0.95 3.22 16 9 N -0.52 -16.33 10.35 -194.92 -2.02 -18.35 16 10 C 0.13 4.56 10.73 84.97 0.91 5.47 16 11 N -0.57 -23.27 7.14 -186.73 -1.33 -24.61 16 12 C 0.34 12.86 6.15 133.24 0.82 13.68 16 13 N -0.46 -18.31 4.69 -691.11 -3.24 -21.56 16 14 C 0.06 2.39 5.14 86.77 0.45 2.83 16 15 C -0.13 -5.66 5.67 31.98 0.18 -5.48 16 16 C 0.23 11.65 0.86 -10.34 -0.01 11.64 16 17 O -0.60 -33.13 13.09 -148.98 -1.95 -35.08 16 18 C -0.56 -30.62 8.21 25.60 0.21 -30.41 16 19 H 0.05 2.98 7.53 -2.91 -0.02 2.96 16 20 C 0.03 1.76 5.28 84.66 0.45 2.21 16 21 N -0.91 -48.91 10.69 21.45 0.23 -48.68 16 22 Si 0.96 42.78 29.54 68.60 2.03 44.80 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 26 C 0.05 2.43 6.12 86.66 0.53 2.96 16 27 C -0.21 -6.07 5.77 -19.51 -0.11 -6.19 16 28 C -0.10 -2.03 7.85 71.24 0.56 -1.47 16 29 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.11 1.05 6.06 -2.39 -0.01 1.04 16 32 H 0.16 3.24 7.60 -2.91 -0.02 3.22 16 33 H 0.19 1.55 8.06 -2.91 -0.02 1.53 16 34 H 0.19 2.57 8.06 -2.91 -0.02 2.55 16 35 H 0.14 5.66 7.52 -2.91 -0.02 5.64 16 36 H 0.04 1.45 7.79 -2.39 -0.02 1.43 16 37 H 0.12 3.41 6.35 -2.39 -0.02 3.39 16 38 H 0.07 2.98 8.04 -2.38 -0.02 2.96 16 39 H 0.06 3.11 7.76 -2.39 -0.02 3.09 16 40 H 0.38 21.19 6.98 -74.06 -0.52 20.68 16 41 H 0.27 13.73 8.31 -92.70 -0.77 12.96 16 42 H 0.08 3.59 7.63 -2.39 -0.02 3.57 16 43 H 0.08 4.00 5.87 -2.39 -0.01 3.99 16 44 H 0.08 1.53 7.87 -2.39 -0.02 1.51 16 45 H 0.10 1.37 6.06 -2.39 -0.01 1.36 16 46 H 0.07 1.62 6.64 -2.39 -0.02 1.61 16 Total: -1.00 -69.98 369.52 -0.17 -70.14 By element: Atomic # 1 Polarization: 41.17 SS G_CDS: 0.51 Total: 41.68 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 7.29 Total: 9.77 kcal Atomic # 7 Polarization: -123.27 SS G_CDS: -8.04 Total: -131.31 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -1.95 Total: -35.08 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -69.98 -0.17 -70.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591976426.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.116 kcal (2) G-P(sol) polarization free energy of solvation -69.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds