Wall clock time and date at job start Tue Mar 31 2020 23:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35210 * 126.06075 * 2 1 4 4 C 1.40463 * 107.86850 * 180.15285 * 3 2 1 5 5 N 1.39925 * 125.98615 * 179.88944 * 4 3 2 6 6 C 1.34777 * 119.99564 * 359.71572 * 5 4 3 7 7 O 1.21386 * 120.00533 * 0.02562 * 6 5 4 8 8 C 1.49346 * 120.00052 * 180.02562 * 6 5 4 9 9 O 1.21363 * 119.99493 * 0.02562 * 8 6 5 10 10 N 1.34773 * 120.00023 * 179.73002 * 8 6 5 11 11 C 1.46506 * 119.99968 * 180.02562 * 10 8 6 12 12 C 1.52992 * 109.47161 * 179.97438 * 11 10 8 13 13 C 1.53006 * 109.47226 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47152 * 184.99628 * 13 12 11 15 15 C 1.52996 * 109.46767 * 304.99907 * 13 12 11 16 16 F 1.39898 * 109.46890 * 64.99552 * 13 12 11 17 17 N 1.31273 * 108.03591 * 359.63154 * 4 3 2 18 18 N 1.34987 * 126.05968 * 179.74939 * 2 1 3 19 19 C 1.46492 * 125.97441 * 359.94364 * 18 2 1 20 20 C 1.50706 * 109.47532 * 270.01787 * 19 18 2 21 21 H 1.08004 * 119.99218 * 0.02562 * 20 19 18 22 22 C 1.37871 * 120.00367 * 180.02562 * 20 19 18 23 23 N 1.31518 * 120.00230 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99869 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47121 * 90.00644 * 24 22 20 26 26 H 1.48506 * 109.46986 * 210.00058 * 24 22 20 27 27 H 1.48495 * 109.47381 * 329.99931 * 24 22 20 28 28 H 1.08997 * 109.47230 * 270.25196 * 1 2 3 29 29 H 1.09000 * 109.47408 * 30.25213 * 1 2 3 30 30 H 1.09003 * 109.46794 * 150.24910 * 1 2 3 31 31 H 1.07998 * 126.07050 * 0.02562 * 3 2 1 32 32 H 0.96996 * 120.00549 * 179.71976 * 5 4 3 33 33 H 0.96998 * 120.00525 * 359.97438 * 10 8 6 34 34 H 1.09004 * 109.46587 * 299.99661 * 11 10 8 35 35 H 1.08998 * 109.47213 * 59.99069 * 11 10 8 36 36 H 1.09004 * 109.47116 * 299.99365 * 12 11 10 37 37 H 1.08998 * 109.47794 * 59.99453 * 12 11 10 38 38 H 1.09002 * 109.46882 * 59.99925 * 14 13 12 39 39 H 1.09002 * 109.47066 * 179.97438 * 14 13 12 40 40 H 1.08994 * 109.47242 * 299.99861 * 14 13 12 41 41 H 1.08995 * 109.47448 * 59.99675 * 15 13 12 42 42 H 1.09002 * 109.46890 * 179.97438 * 15 13 12 43 43 H 1.08999 * 109.47382 * 299.99541 * 15 13 12 44 44 H 1.08998 * 109.47231 * 30.01867 * 19 18 2 45 45 H 1.08999 * 109.47200 * 150.01786 * 19 18 2 46 46 H 0.96993 * 119.99864 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3029 1.0930 0.0000 4 6 3.6374 0.6545 -0.0036 5 7 4.7719 1.4734 -0.0069 6 6 4.6351 2.8142 -0.0127 7 8 3.5277 3.3114 -0.0145 8 6 5.8460 3.6884 -0.0168 9 8 6.9532 3.1913 -0.0155 10 7 5.7092 5.0291 -0.0281 11 6 6.8970 5.8866 -0.0327 12 6 6.4662 7.3546 -0.0463 13 6 7.7068 8.2502 -0.0505 14 6 7.2788 9.7148 0.0616 15 6 8.6013 7.8878 1.1367 16 9 8.4144 8.0610 -1.2424 17 7 3.6338 -0.6582 0.0024 18 7 2.3016 -1.0912 0.0048 19 6 1.8498 -2.4847 0.0120 20 6 1.6955 -2.9555 1.4353 21 1 1.9120 -2.2835 2.2527 22 6 1.2780 -4.2438 1.6940 23 7 1.1429 -4.6544 2.9361 24 14 0.9029 -5.4056 0.2802 25 1 2.1354 -6.1449 -0.0933 26 1 -0.1459 -6.3706 0.6974 27 1 0.4209 -4.6249 -0.8875 28 1 -0.3633 0.0045 1.0276 29 1 -0.3634 0.8877 -0.5177 30 1 -0.3633 -0.8923 -0.5100 31 1 1.9716 2.1209 0.0004 32 1 5.6568 1.0762 -0.0051 33 1 4.8243 5.4264 -0.0339 34 1 7.4905 5.6900 0.8602 35 1 7.4943 5.6753 -0.9197 36 1 5.8730 7.5509 -0.9394 37 1 5.8688 7.5662 0.8405 38 1 6.7275 9.8622 0.9903 39 1 8.1626 10.3528 0.0591 40 1 6.6416 9.9729 -0.7841 41 1 8.9061 6.8444 1.0568 42 1 9.4853 8.5256 1.1334 43 1 8.0500 8.0352 2.0654 44 1 0.8909 -2.5584 -0.5010 45 1 2.5840 -3.1074 -0.4990 46 1 0.8489 -5.5606 3.1180 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595159564.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:36 Heat of formation + Delta-G solvation = -45.711709 kcal Electronic energy + Delta-G solvation = -28505.853357 eV Core-core repulsion = 24153.908241 eV Total energy + Delta-G solvation = -4351.945116 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -48.13048 -41.17856 -40.35089 -38.66151 -36.89040 -35.32691 -34.33253 -33.33366 -31.64047 -31.20696 -30.07597 -28.10467 -27.50871 -26.52803 -25.66286 -23.56553 -22.41564 -21.23401 -20.73193 -19.95807 -19.62417 -18.04731 -17.18182 -17.15333 -16.61961 -16.35173 -16.11455 -15.97763 -15.71121 -15.30395 -15.17607 -15.04541 -14.57686 -14.17621 -14.03002 -13.69202 -13.48007 -13.32119 -12.91918 -12.83167 -12.65656 -12.55463 -12.49634 -12.42981 -12.39233 -12.11236 -11.97478 -11.70927 -11.60264 -11.31639 -11.19160 -11.15264 -10.82075 -10.66234 -10.06954 -10.04139 -9.65979 -9.62648 -9.59796 -8.80999 -8.12265 -7.63066 -6.28998 -4.32667 1.13947 1.95932 2.54788 2.94865 3.04245 3.14163 3.19386 3.23137 3.58424 3.68729 3.89878 4.01160 4.07659 4.16631 4.18912 4.32083 4.55368 4.60944 4.94550 4.95609 4.99056 5.09328 5.17896 5.22259 5.30196 5.37987 5.47987 5.52303 5.62171 5.66884 5.72814 5.83102 5.97516 6.01690 6.22564 6.29833 6.39007 6.51180 6.60144 6.82649 7.19749 7.24423 7.30704 7.57164 7.75628 7.88162 8.26842 8.43846 8.75702 9.25701 10.83409 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.031125 B = 0.001744 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.368753 B =16052.881608 C =16357.742876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.097 3.903 3 C -0.286 4.286 4 C 0.262 3.738 5 N -0.599 5.599 6 C 0.513 3.487 7 O -0.498 6.498 8 C 0.517 3.483 9 O -0.513 6.513 10 N -0.701 5.701 11 C 0.113 3.887 12 C -0.155 4.155 13 C 0.120 3.880 14 C -0.173 4.173 15 C -0.181 4.181 16 F -0.207 7.207 17 N -0.308 5.308 18 N -0.312 5.312 19 C 0.230 3.770 20 C -0.542 4.542 21 H 0.081 0.919 22 C 0.080 3.920 23 N -0.885 5.885 24 Si 0.874 3.126 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.264 1.264 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.163 0.837 32 H 0.424 0.576 33 H 0.414 0.586 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.052 0.948 45 H 0.047 0.953 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.482 26.933 -6.366 28.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.034 4.034 3 C -0.317 4.317 4 C 0.009 3.991 5 N -0.247 5.247 6 C 0.293 3.707 7 O -0.371 6.371 8 C 0.296 3.704 9 O -0.388 6.388 10 N -0.355 5.355 11 C -0.010 4.010 12 C -0.193 4.193 13 C 0.101 3.899 14 C -0.231 4.231 15 C -0.239 4.239 16 F -0.188 7.188 17 N -0.138 5.138 18 N -0.094 5.094 19 C 0.111 3.889 20 C -0.580 4.580 21 H 0.099 0.901 22 C -0.125 4.125 23 N -0.522 5.522 24 Si 0.700 3.300 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.189 1.189 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.180 0.820 32 H 0.261 0.739 33 H 0.251 0.749 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.161 25.599 -6.270 27.902 hybrid contribution -0.483 -0.165 -0.546 0.747 sum 8.678 25.434 -6.816 27.725 Atomic orbital electron populations 1.20371 0.87560 1.02850 1.03595 1.21078 0.95034 0.86860 1.00418 1.21246 0.89458 0.99944 1.21011 1.18876 0.86837 0.89628 1.03765 1.41996 1.08794 1.04363 1.69540 1.19904 0.89523 0.82570 0.78694 1.90713 1.25901 1.73898 1.46570 1.19870 0.89067 0.83412 0.78006 1.90803 1.26341 1.74266 1.47402 1.45650 1.11248 1.05075 1.73502 1.21584 0.87359 0.88199 1.03818 1.22421 0.98034 0.93744 1.05112 1.20813 0.90793 0.96261 0.82032 1.22375 1.02932 0.94013 1.03731 1.22508 1.00352 1.03592 0.97411 1.92883 1.80475 1.96463 1.49000 1.77340 0.99461 1.08393 1.28644 1.48597 1.01146 1.07213 1.52470 1.20056 0.95412 0.73528 0.99871 1.21154 1.47563 0.99102 0.90231 0.90073 1.24802 0.94426 0.97450 0.95802 1.69870 1.45539 1.18328 1.18460 0.86888 0.79023 0.81514 0.82560 1.19603 1.20502 1.18892 0.89934 0.90550 0.90990 0.81996 0.73902 0.74901 0.90129 0.90197 0.89517 0.88909 0.90441 0.91113 0.91192 0.90690 0.91120 0.90350 0.93042 0.93498 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.35 10.11 36.01 0.36 -0.99 16 2 C 0.10 1.93 6.92 -82.28 -0.57 1.36 16 3 C -0.29 -5.53 9.51 -39.82 -0.38 -5.91 16 4 C 0.26 5.19 8.10 -154.56 -1.25 3.94 16 5 N -0.60 -9.65 5.43 -11.58 -0.06 -9.71 16 6 C 0.51 7.35 7.85 -11.63 -0.09 7.26 16 7 O -0.50 -7.66 13.60 5.47 0.07 -7.58 16 8 C 0.52 6.27 7.89 -11.64 -0.09 6.17 16 9 O -0.51 -7.30 16.48 5.49 0.09 -7.21 16 10 N -0.70 -6.09 5.55 -60.76 -0.34 -6.43 16 11 C 0.11 0.81 5.10 -4.04 -0.02 0.79 16 12 C -0.16 -0.72 4.69 -26.73 -0.13 -0.84 16 13 C 0.12 0.62 1.38 -90.62 -0.12 0.49 16 14 C -0.17 -0.63 8.93 37.16 0.33 -0.30 16 15 C -0.18 -0.80 8.44 37.16 0.31 -0.49 16 16 F -0.21 -1.71 16.49 2.25 0.04 -1.67 16 17 N -0.31 -6.95 12.60 31.41 0.40 -6.56 16 18 N -0.31 -7.09 3.59 -58.33 -0.21 -7.30 16 19 C 0.23 5.45 5.06 -5.19 -0.03 5.42 16 20 C -0.54 -15.00 9.94 -34.44 -0.34 -15.35 16 21 H 0.08 2.54 8.06 -52.48 -0.42 2.12 16 22 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 23 N -0.89 -26.07 13.96 55.43 0.77 -25.29 16 24 Si 0.87 19.94 27.47 -169.99 -4.67 15.27 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.26 -5.61 6.54 56.52 0.37 -5.24 16 28 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.07 1.11 7.07 -51.93 -0.37 0.74 16 31 H 0.16 2.92 5.91 -52.49 -0.31 2.61 16 32 H 0.42 6.21 8.29 -40.82 -0.34 5.87 16 33 H 0.41 2.96 7.94 -40.82 -0.32 2.64 16 34 H 0.08 0.57 6.34 -51.93 -0.33 0.25 16 35 H 0.08 0.68 7.93 -51.93 -0.41 0.26 16 36 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 39 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.07 0.39 6.34 -51.93 -0.33 0.06 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.05 1.12 6.10 -51.93 -0.32 0.81 16 45 H 0.05 1.11 7.57 -51.93 -0.39 0.71 16 46 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 388.45 15.07 5.85 5.85 Total: -1.00 -33.74 388.45 -6.68 -40.42 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -6.51 Total: 6.52 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -2.11 Total: 3.67 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.56 Total: -55.28 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: 0.16 Total: -14.79 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.67 Total: 15.27 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.74 -6.68 -40.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595159564.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.290 kcal (2) G-P(sol) polarization free energy of solvation -33.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds