Wall clock time and date at job start Tue Mar 31 2020 23:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35210 * 126.06075 * 2 1 4 4 C 1.40463 * 107.86850 * 180.15285 * 3 2 1 5 5 N 1.39925 * 125.98615 * 179.88944 * 4 3 2 6 6 C 1.34777 * 119.99564 * 359.71572 * 5 4 3 7 7 O 1.21386 * 120.00533 * 0.02562 * 6 5 4 8 8 C 1.49346 * 120.00052 * 180.02562 * 6 5 4 9 9 O 1.21363 * 119.99493 * 0.02562 * 8 6 5 10 10 N 1.34773 * 120.00023 * 179.73002 * 8 6 5 11 11 C 1.46506 * 119.99968 * 180.02562 * 10 8 6 12 12 C 1.52992 * 109.47161 * 179.97438 * 11 10 8 13 13 C 1.53006 * 109.47226 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47152 * 184.99628 * 13 12 11 15 15 C 1.52996 * 109.46767 * 304.99907 * 13 12 11 16 16 F 1.39898 * 109.46890 * 64.99552 * 13 12 11 17 17 N 1.31273 * 108.03591 * 359.63154 * 4 3 2 18 18 N 1.34987 * 126.05968 * 179.74939 * 2 1 3 19 19 C 1.46492 * 125.97441 * 359.94364 * 18 2 1 20 20 C 1.50706 * 109.47532 * 270.01787 * 19 18 2 21 21 H 1.08004 * 119.99218 * 0.02562 * 20 19 18 22 22 C 1.37871 * 120.00367 * 180.02562 * 20 19 18 23 23 N 1.31518 * 120.00230 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99869 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47121 * 90.00644 * 24 22 20 26 26 H 1.48506 * 109.46986 * 210.00058 * 24 22 20 27 27 H 1.48495 * 109.47381 * 329.99931 * 24 22 20 28 28 H 1.08997 * 109.47230 * 270.25196 * 1 2 3 29 29 H 1.09000 * 109.47408 * 30.25213 * 1 2 3 30 30 H 1.09003 * 109.46794 * 150.24910 * 1 2 3 31 31 H 1.07998 * 126.07050 * 0.02562 * 3 2 1 32 32 H 0.96996 * 120.00549 * 179.71976 * 5 4 3 33 33 H 0.96998 * 120.00525 * 359.97438 * 10 8 6 34 34 H 1.09004 * 109.46587 * 299.99661 * 11 10 8 35 35 H 1.08998 * 109.47213 * 59.99069 * 11 10 8 36 36 H 1.09004 * 109.47116 * 299.99365 * 12 11 10 37 37 H 1.08998 * 109.47794 * 59.99453 * 12 11 10 38 38 H 1.09002 * 109.46882 * 59.99925 * 14 13 12 39 39 H 1.09002 * 109.47066 * 179.97438 * 14 13 12 40 40 H 1.08994 * 109.47242 * 299.99861 * 14 13 12 41 41 H 1.08995 * 109.47448 * 59.99675 * 15 13 12 42 42 H 1.09002 * 109.46890 * 179.97438 * 15 13 12 43 43 H 1.08999 * 109.47382 * 299.99541 * 15 13 12 44 44 H 1.08998 * 109.47231 * 30.01867 * 19 18 2 45 45 H 1.08999 * 109.47200 * 150.01786 * 19 18 2 46 46 H 0.96993 * 119.99864 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3029 1.0930 0.0000 4 6 3.6374 0.6545 -0.0036 5 7 4.7719 1.4734 -0.0069 6 6 4.6351 2.8142 -0.0127 7 8 3.5277 3.3114 -0.0145 8 6 5.8460 3.6884 -0.0168 9 8 6.9532 3.1913 -0.0155 10 7 5.7092 5.0291 -0.0281 11 6 6.8970 5.8866 -0.0327 12 6 6.4662 7.3546 -0.0463 13 6 7.7068 8.2502 -0.0505 14 6 7.2788 9.7148 0.0616 15 6 8.6013 7.8878 1.1367 16 9 8.4144 8.0610 -1.2424 17 7 3.6338 -0.6582 0.0024 18 7 2.3016 -1.0912 0.0048 19 6 1.8498 -2.4847 0.0120 20 6 1.6955 -2.9555 1.4353 21 1 1.9120 -2.2835 2.2527 22 6 1.2780 -4.2438 1.6940 23 7 1.1429 -4.6544 2.9361 24 14 0.9029 -5.4056 0.2802 25 1 2.1354 -6.1449 -0.0933 26 1 -0.1459 -6.3706 0.6974 27 1 0.4209 -4.6249 -0.8875 28 1 -0.3633 0.0045 1.0276 29 1 -0.3634 0.8877 -0.5177 30 1 -0.3633 -0.8923 -0.5100 31 1 1.9716 2.1209 0.0004 32 1 5.6568 1.0762 -0.0051 33 1 4.8243 5.4264 -0.0339 34 1 7.4905 5.6900 0.8602 35 1 7.4943 5.6753 -0.9197 36 1 5.8730 7.5509 -0.9394 37 1 5.8688 7.5662 0.8405 38 1 6.7275 9.8622 0.9903 39 1 8.1626 10.3528 0.0591 40 1 6.6416 9.9729 -0.7841 41 1 8.9061 6.8444 1.0568 42 1 9.4853 8.5256 1.1334 43 1 8.0500 8.0352 2.0654 44 1 0.8909 -2.5584 -0.5010 45 1 2.5840 -3.1074 -0.4990 46 1 0.8489 -5.5606 3.1180 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595159564.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:35 Heat of formation + Delta-G solvation = -69.623029 kcal Electronic energy + Delta-G solvation = -28506.890230 eV Core-core repulsion = 24153.908241 eV Total energy + Delta-G solvation = -4352.981988 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.64453 -42.55305 -41.60889 -39.79422 -37.55335 -36.59013 -35.37586 -34.97674 -33.26628 -32.84742 -30.67582 -29.24275 -28.41488 -27.94390 -26.76675 -24.67499 -23.88822 -22.33024 -21.42421 -21.39805 -20.73193 -19.26313 -19.24161 -18.24084 -17.57472 -17.40323 -17.05652 -16.87749 -16.75817 -16.40590 -16.17420 -15.99542 -15.81993 -15.52171 -15.14026 -14.92120 -14.67583 -14.54408 -13.91690 -13.91104 -13.79717 -13.65024 -13.31331 -13.27794 -13.17277 -13.04400 -12.88126 -12.81953 -12.68250 -12.55529 -12.46704 -12.30443 -11.83106 -11.70316 -11.59574 -11.55369 -11.54377 -10.90350 -10.82474 -10.39490 -9.69225 -9.22615 -8.40514 -6.51905 0.00499 0.79430 1.03935 1.35435 1.38082 1.47057 1.67461 1.76331 2.20768 2.26575 2.50680 2.92161 3.17659 3.48956 3.63459 3.71679 3.76372 3.81219 4.04816 4.12642 4.16633 4.36405 4.49725 4.49936 4.62524 4.68070 4.74727 4.78027 4.81096 4.81921 4.86247 4.88490 4.93418 5.03128 5.08818 5.15636 5.21734 5.22725 5.29756 5.30780 5.72667 5.78338 5.95943 6.11888 6.33074 6.51215 6.52988 6.75095 6.87977 7.11926 8.76022 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.031125 B = 0.001744 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.368753 B =16052.881608 C =16357.742876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.093 3.907 3 C -0.292 4.292 4 C 0.268 3.732 5 N -0.601 5.601 6 C 0.518 3.482 7 O -0.505 6.505 8 C 0.523 3.477 9 O -0.537 6.537 10 N -0.679 5.679 11 C 0.111 3.889 12 C -0.148 4.148 13 C 0.112 3.888 14 C -0.171 4.171 15 C -0.182 4.182 16 F -0.229 7.229 17 N -0.352 5.352 18 N -0.338 5.338 19 C 0.239 3.761 20 C -0.551 4.551 21 H 0.024 0.976 22 C 0.022 3.978 23 N -0.937 5.937 24 Si 0.951 3.049 25 H -0.268 1.268 26 H -0.274 1.274 27 H -0.232 1.232 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.177 0.823 32 H 0.429 0.571 33 H 0.424 0.576 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.095 0.905 44 H 0.079 0.921 45 H 0.048 0.952 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.463 28.553 -7.906 30.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.037 4.037 3 C -0.323 4.323 4 C 0.014 3.986 5 N -0.251 5.251 6 C 0.298 3.702 7 O -0.377 6.377 8 C 0.302 3.698 9 O -0.414 6.414 10 N -0.333 5.333 11 C -0.011 4.011 12 C -0.185 4.185 13 C 0.093 3.907 14 C -0.228 4.228 15 C -0.239 4.239 16 F -0.210 7.210 17 N -0.182 5.182 18 N -0.120 5.120 19 C 0.119 3.881 20 C -0.589 4.589 21 H 0.043 0.957 22 C -0.178 4.178 23 N -0.575 5.575 24 Si 0.772 3.228 25 H -0.193 1.193 26 H -0.199 1.199 27 H -0.155 1.155 28 H 0.098 0.902 29 H 0.131 0.869 30 H 0.096 0.904 31 H 0.194 0.806 32 H 0.267 0.733 33 H 0.263 0.737 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.134 0.866 38 H 0.114 0.886 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.114 0.886 44 H 0.096 0.904 45 H 0.066 0.934 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.137 27.303 -7.818 29.543 hybrid contribution -0.096 -0.468 0.034 0.479 sum 8.041 26.835 -7.784 29.075 Atomic orbital electron populations 1.20543 0.84738 1.04967 1.04021 1.21832 0.96906 0.86150 0.98783 1.21497 0.89181 1.00481 1.21099 1.19194 0.88272 0.89318 1.01814 1.42123 1.08118 1.04793 1.70027 1.20345 0.90274 0.82027 0.77508 1.90689 1.26551 1.73918 1.46587 1.19445 0.87670 0.84172 0.78473 1.90807 1.26678 1.74787 1.49115 1.45630 1.12499 1.03839 1.71318 1.21729 0.86581 0.89464 1.03341 1.22411 0.98099 0.91480 1.06542 1.21073 0.90854 0.97445 0.81305 1.22372 1.03102 0.92625 1.04706 1.22529 1.00602 1.02883 0.97923 1.92845 1.81064 1.96643 1.50403 1.77245 1.00083 1.09951 1.30915 1.48509 1.01674 1.07352 1.54503 1.19842 0.96594 0.74494 0.97127 1.21238 1.47794 0.98772 0.91117 0.95731 1.25824 0.93735 0.99259 0.98975 1.70031 1.46879 1.19184 1.21394 0.85684 0.78968 0.78826 0.79349 1.19307 1.19910 1.15462 0.90195 0.86923 0.90382 0.80550 0.73306 0.73702 0.89837 0.91559 0.88992 0.86583 0.88613 0.91240 0.91188 0.91759 0.91107 0.88619 0.90385 0.93389 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.51 10.11 71.24 0.72 -1.79 16 2 C 0.09 3.65 6.92 41.38 0.29 3.93 16 3 C -0.29 -11.07 9.51 22.11 0.21 -10.86 16 4 C 0.27 10.66 8.10 133.40 1.08 11.74 16 5 N -0.60 -19.33 5.43 -308.89 -1.68 -21.01 16 6 C 0.52 14.36 7.85 87.24 0.69 15.04 16 7 O -0.50 -14.73 13.60 -3.36 -0.05 -14.77 16 8 C 0.52 12.16 7.89 87.24 0.69 12.85 16 9 O -0.54 -15.03 16.48 -3.29 -0.05 -15.09 16 10 N -0.68 -10.60 5.55 -464.52 -2.58 -13.18 16 11 C 0.11 1.43 5.10 86.38 0.44 1.87 16 12 C -0.15 -1.03 4.69 30.59 0.14 -0.88 16 13 C 0.11 0.97 1.38 -10.79 -0.01 0.96 16 14 C -0.17 -0.88 8.93 71.98 0.64 -0.23 16 15 C -0.18 -1.35 8.44 71.98 0.61 -0.74 16 16 F -0.23 -3.62 16.49 44.97 0.74 -2.88 16 17 N -0.35 -16.16 12.60 -54.54 -0.69 -16.85 16 18 N -0.34 -15.42 3.59 -338.46 -1.22 -16.63 16 19 C 0.24 11.22 5.06 85.64 0.43 11.65 16 20 C -0.55 -31.35 9.94 25.60 0.25 -31.09 16 21 H 0.02 1.62 8.06 -2.91 -0.02 1.60 16 22 C 0.02 1.22 5.47 84.65 0.46 1.69 16 23 N -0.94 -56.72 13.96 21.45 0.30 -56.42 16 24 Si 0.95 40.47 27.47 68.60 1.88 42.35 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 27 H -0.23 -8.61 6.54 99.48 0.65 -7.95 16 28 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.08 2.21 7.07 -2.39 -0.02 2.19 16 31 H 0.18 6.07 5.91 -2.91 -0.02 6.05 16 32 H 0.43 12.74 8.29 -92.71 -0.77 11.98 16 33 H 0.42 5.03 7.94 -92.71 -0.74 4.29 16 34 H 0.08 1.08 6.34 -2.39 -0.02 1.06 16 35 H 0.07 1.08 7.93 -2.39 -0.02 1.06 16 36 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.06 0.61 6.34 -2.39 -0.02 0.60 16 42 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.08 3.22 6.10 -2.39 -0.01 3.21 16 45 H 0.05 2.22 7.57 -2.39 -0.02 2.21 16 46 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -76.15 388.45 2.78 -73.37 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: -0.53 Total: 26.98 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 6.64 Total: 14.13 kcal Atomic # 7 Polarization: -118.23 SS G_CDS: -5.86 Total: -124.09 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.10 Total: -29.86 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.74 Total: -2.88 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 1.88 Total: 42.35 kcal Total: -76.15 2.78 -73.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595159564.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.743 kcal (2) G-P(sol) polarization free energy of solvation -76.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds