Wall clock time and date at job start Tue Mar 31 2020 22:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38141 * 120.02815 * 2 1 4 4 C 1.38259 * 120.06348 * 180.02562 * 3 2 1 5 5 C 1.38300 * 120.13289 * 359.95566 * 4 3 2 6 6 C 1.38106 * 120.06370 * 0.04671 * 5 4 3 7 7 C 1.38801 * 120.03308 * 180.02562 * 2 1 3 8 8 N 1.40221 * 120.06939 * 359.97438 * 7 2 1 9 9 C 1.35075 * 126.61905 * 172.13411 * 8 7 2 10 10 C 1.36620 * 106.80044 * 179.97438 * 9 8 7 11 11 C 1.47503 * 125.76817 * 180.02562 * 10 9 8 12 12 O 1.21599 * 120.00280 * 351.71731 * 11 10 9 13 13 N 1.34780 * 120.00048 * 171.72475 * 11 10 9 14 14 C 1.46920 * 120.62927 * 352.99731 * 13 11 10 15 15 C 1.52764 * 109.01103 * 233.58822 * 14 13 11 16 16 C 1.53041 * 109.38005 * 305.58957 * 15 14 13 17 17 C 1.53034 * 109.53943 * 61.23756 * 16 15 14 18 18 H 1.08998 * 109.50094 * 58.58891 * 17 16 15 19 19 C 1.50698 * 109.49875 * 178.68268 * 17 16 15 20 20 H 1.07999 * 120.00152 * 359.83549 * 19 17 16 21 21 C 1.37882 * 120.00213 * 179.84130 * 19 17 16 22 22 N 1.31514 * 119.99968 * 359.97438 * 21 19 17 23 23 Si 1.86805 * 119.99883 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47112 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.46946 * 119.99873 * 23 21 19 26 26 H 1.48499 * 109.46744 * 239.99564 * 23 21 19 27 27 C 1.46920 * 120.63196 * 173.28100 * 13 11 10 28 28 N 1.34416 * 108.46037 * 359.97438 * 10 9 8 29 29 N 1.28747 * 109.58391 * 359.75379 * 28 10 9 30 30 H 1.08996 * 109.47144 * 262.14833 * 1 2 3 31 31 H 1.08999 * 109.47461 * 22.15779 * 1 2 3 32 32 H 1.09003 * 109.46520 * 142.15260 * 1 2 3 33 33 H 1.07998 * 119.97214 * 0.02562 * 3 2 1 34 34 H 1.07997 * 119.93506 * 179.97438 * 4 3 2 35 35 H 1.08000 * 119.97311 * 180.02562 * 5 4 3 36 36 H 1.07994 * 120.03249 * 180.25889 * 6 5 4 37 37 H 1.08004 * 126.60042 * 0.02562 * 9 8 7 38 38 H 1.09000 * 109.59102 * 353.41692 * 14 13 11 39 39 H 1.08997 * 109.59033 * 113.84891 * 14 13 11 40 40 H 1.09003 * 109.56743 * 185.55174 * 15 14 13 41 41 H 1.09000 * 109.38790 * 65.51158 * 15 14 13 42 42 H 1.09003 * 109.45858 * 301.21383 * 16 15 14 43 43 H 1.09008 * 109.44818 * 181.25260 * 16 15 14 44 44 H 0.96991 * 120.00075 * 179.97438 * 22 21 19 45 45 H 1.08997 * 109.58680 * 246.15537 * 27 13 11 46 46 H 1.09004 * 109.58705 * 6.57654 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1960 0.0000 4 6 3.5809 1.1968 -0.0005 5 6 4.2760 0.0012 -0.0001 6 6 3.5903 -1.1976 -0.0002 7 6 2.2018 -1.2016 -0.0005 8 7 1.5028 -2.4172 -0.0005 9 6 2.0322 -3.6510 -0.1494 10 6 0.9938 -4.5366 -0.0852 11 6 1.1032 -6.0032 -0.1989 12 8 2.1620 -6.5113 -0.5143 13 7 0.0296 -6.7801 0.0465 14 6 -1.2111 -6.1971 0.5751 15 6 -1.6186 -6.9547 1.8375 16 6 -1.7096 -8.4501 1.5252 17 6 -0.3405 -8.9627 1.0728 18 1 0.3940 -8.7793 1.8570 19 6 -0.4233 -10.4419 0.7966 20 1 -1.3582 -10.9651 0.9327 21 6 0.6945 -11.1273 0.3701 22 7 1.8329 -10.4901 0.2040 23 14 0.5915 -12.9606 0.0270 24 1 -0.7907 -13.4362 0.2883 25 1 0.9447 -13.2193 -1.3920 26 1 1.5391 -13.6839 0.9127 27 6 0.0797 -8.2270 -0.2035 28 7 -0.1441 -3.8456 0.1002 29 7 0.1203 -2.5870 0.1607 30 1 -0.3633 -0.1404 1.0180 31 1 -0.3634 0.9517 -0.3876 32 1 -0.3632 -0.8115 -0.6306 33 1 1.6584 2.1313 0.0004 34 1 4.1193 2.1331 -0.0010 35 1 5.3560 0.0048 -0.0001 36 1 4.1335 -2.1310 0.0043 37 1 3.0756 -3.8913 -0.2910 38 1 -1.0472 -5.1471 0.8178 39 1 -2.0017 -6.2828 -0.1703 40 1 -2.5883 -6.5953 2.1819 41 1 -0.8725 -6.7902 2.6149 42 1 -2.4384 -8.6115 0.7309 43 1 -2.0219 -8.9893 2.4196 44 1 2.6193 -10.9723 -0.0957 45 1 -0.6034 -8.4816 -1.0137 46 1 1.0951 -8.5160 -0.4745 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597903476.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:02 Heat of formation + Delta-G solvation = 105.336089 kcal Electronic energy + Delta-G solvation = -29102.820016 eV Core-core repulsion = 25188.194049 eV Total energy + Delta-G solvation = -3914.625967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.54530 -39.90431 -39.01383 -36.61614 -34.92468 -33.37189 -33.26983 -31.72530 -30.95288 -30.29129 -29.49788 -27.43872 -25.51680 -24.89904 -24.17315 -23.08474 -21.86312 -21.68320 -21.52529 -19.93251 -18.90718 -17.86614 -16.69974 -16.37827 -16.16759 -16.06678 -15.63064 -15.37408 -14.92126 -14.57878 -14.39399 -14.22927 -13.86575 -13.67146 -13.58451 -13.32645 -13.08213 -12.74779 -12.64736 -12.57687 -12.19308 -12.08055 -11.93330 -11.70932 -11.48266 -11.40611 -11.29393 -10.95678 -10.64774 -10.40264 -10.21816 -9.98708 -9.75273 -9.54989 -9.44625 -9.27797 -9.04752 -8.84350 -8.74177 -8.39381 -7.67074 -5.95640 -4.04079 0.20001 0.79554 1.52310 1.80037 1.81566 3.21549 3.32415 3.40888 3.44337 3.60737 3.74189 4.07216 4.19040 4.29632 4.46253 4.50729 4.61538 4.74731 4.79062 4.95465 5.05233 5.11950 5.30567 5.34253 5.40193 5.43176 5.50706 5.72408 5.72916 5.80345 5.92286 5.94856 6.01334 6.03663 6.15219 6.28842 6.42590 6.51740 6.59973 6.73516 6.77676 6.95234 7.05954 7.20549 7.34735 7.68121 7.84373 7.92892 8.04242 8.29756 8.43237 8.81786 9.00483 9.61184 11.09578 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023519 B = 0.002479 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.245468 B =11293.005469 C =12255.847235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.068 4.068 3 C -0.104 4.104 4 C -0.112 4.112 5 C -0.103 4.103 6 C -0.120 4.120 7 C 0.132 3.868 8 N -0.311 5.311 9 C 0.083 3.917 10 C -0.072 4.072 11 C 0.587 3.413 12 O -0.533 6.533 13 N -0.586 5.586 14 C 0.088 3.912 15 C -0.133 4.133 16 C -0.111 4.111 17 C 0.040 3.960 18 H 0.029 0.971 19 C -0.518 4.518 20 H 0.059 0.941 21 C 0.062 3.938 22 N -0.880 5.880 23 Si 0.891 3.109 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.112 3.888 28 N -0.199 5.199 29 N -0.065 5.065 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.206 0.794 38 H 0.112 0.888 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.050 0.950 44 H 0.262 0.738 45 H 0.045 0.955 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.830 25.464 -0.403 25.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.070 4.070 3 C -0.122 4.122 4 C -0.131 4.131 5 C -0.122 4.122 6 C -0.141 4.141 7 C 0.040 3.960 8 N -0.090 5.090 9 C -0.070 4.070 10 C -0.210 4.210 11 C 0.371 3.629 12 O -0.410 6.410 13 N -0.316 5.316 14 C -0.036 4.036 15 C -0.171 4.171 16 C -0.149 4.149 17 C 0.021 3.979 18 H 0.047 0.953 19 C -0.557 4.557 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.518 5.518 23 Si 0.719 3.281 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.211 1.211 27 C -0.008 4.008 28 N -0.072 5.072 29 N -0.043 5.043 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.223 0.777 38 H 0.129 0.871 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.197 25.766 -0.432 25.797 hybrid contribution 0.985 -1.431 -0.298 1.762 sum 2.182 24.335 -0.730 24.443 Atomic orbital electron populations 1.21065 0.89280 1.03292 1.03888 1.19797 0.97441 0.90763 0.99027 1.21024 0.94219 0.97025 0.99949 1.21318 0.94239 0.98532 0.99027 1.21019 1.00447 0.91264 0.99475 1.21010 0.91037 1.00243 1.01808 1.17530 0.90587 0.82285 1.05604 1.47550 1.08222 1.04942 1.48245 1.23363 1.01764 0.82902 0.98926 1.21900 0.88588 0.96963 1.13512 1.16815 0.84600 0.82649 0.78878 1.90831 1.27314 1.73382 1.49433 1.48314 1.11713 1.10231 1.61364 1.22239 0.86332 0.99513 0.95482 1.21872 1.00217 0.97742 0.97285 1.21643 1.00312 0.92826 1.00123 1.18970 0.91346 0.94308 0.93317 0.95271 1.21130 0.96133 0.92583 1.45841 0.92292 1.25063 0.95442 0.98276 0.95322 1.69899 1.00388 1.35602 1.45915 0.86545 0.78028 0.85601 0.77887 1.19808 1.20998 1.21061 1.22367 1.05799 0.73462 0.99177 1.74546 1.23986 0.98476 1.10188 1.82108 0.88676 1.10832 1.22657 0.90230 0.91574 0.89265 0.84751 0.85098 0.84613 0.84570 0.77724 0.87102 0.92248 0.92218 0.92533 0.93181 0.93150 0.92758 0.93650 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 8.65 36.01 0.31 -0.73 16 2 C -0.07 -0.62 5.89 -104.45 -0.62 -1.23 16 3 C -0.10 -0.69 9.67 -39.61 -0.38 -1.08 16 4 C -0.11 -0.65 10.04 -39.55 -0.40 -1.05 16 5 C -0.10 -0.65 10.04 -39.61 -0.40 -1.05 16 6 C -0.12 -0.99 9.47 -39.40 -0.37 -1.36 16 7 C 0.13 1.37 6.66 -83.58 -0.56 0.81 16 8 N -0.31 -3.97 3.79 -10.42 -0.04 -4.01 16 9 C 0.08 1.14 10.60 -16.71 -0.18 0.96 16 10 C -0.07 -1.23 6.68 -83.54 -0.56 -1.78 16 11 C 0.59 12.37 7.67 -12.48 -0.10 12.27 16 12 O -0.53 -12.86 16.30 5.28 0.09 -12.77 16 13 N -0.59 -12.55 2.98 -174.28 -0.52 -13.07 16 14 C 0.09 1.60 6.05 -3.93 -0.02 1.57 16 15 C -0.13 -2.38 6.07 -26.83 -0.16 -2.54 16 16 C -0.11 -2.33 5.11 -26.69 -0.14 -2.46 16 17 C 0.04 1.01 2.25 -91.66 -0.21 0.80 16 18 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 19 C -0.52 -14.23 8.56 -34.44 -0.29 -14.52 16 20 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 21 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 22 N -0.88 -25.76 11.39 55.43 0.63 -25.13 16 23 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 C 0.11 2.78 5.41 -3.71 -0.02 2.76 16 28 N -0.20 -3.22 8.81 32.85 0.29 -2.93 16 29 N -0.07 -0.94 10.02 60.35 0.60 -0.33 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.43 8.03 -51.93 -0.42 0.02 16 32 H 0.09 0.96 5.93 -51.93 -0.31 0.65 16 33 H 0.13 0.60 8.05 -52.49 -0.42 0.17 16 34 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 35 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 36 H 0.14 0.94 6.87 -52.49 -0.36 0.58 16 37 H 0.21 2.24 7.20 -52.48 -0.38 1.86 16 38 H 0.11 1.89 4.14 -75.11 -0.31 1.58 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 1.03 8.14 -51.92 -0.42 0.60 16 44 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 46 H 0.12 3.51 5.11 -51.93 -0.27 3.25 16 LS Contribution 370.91 15.07 5.59 5.59 Total: -1.00 -32.63 370.91 -8.79 -41.42 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.23 Total: 1.86 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -4.18 Total: -7.01 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.97 Total: -45.48 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.09 Total: -12.77 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.63 -8.79 -41.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903476.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.756 kcal (2) G-P(sol) polarization free energy of solvation -32.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds