Wall clock time and date at job start Tue Mar 31 2020 22:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38141 * 120.02815 * 2 1 4 4 C 1.38259 * 120.06348 * 180.02562 * 3 2 1 5 5 C 1.38300 * 120.13289 * 359.95566 * 4 3 2 6 6 C 1.38106 * 120.06370 * 0.04671 * 5 4 3 7 7 C 1.38801 * 120.03308 * 180.02562 * 2 1 3 8 8 N 1.40221 * 120.06939 * 359.97438 * 7 2 1 9 9 C 1.35075 * 126.61905 * 172.13411 * 8 7 2 10 10 C 1.36620 * 106.80044 * 179.97438 * 9 8 7 11 11 C 1.47503 * 125.76817 * 180.02562 * 10 9 8 12 12 O 1.21599 * 120.00280 * 351.71731 * 11 10 9 13 13 N 1.34780 * 120.00048 * 171.72475 * 11 10 9 14 14 C 1.46920 * 120.62927 * 352.99731 * 13 11 10 15 15 C 1.52764 * 109.01103 * 233.58822 * 14 13 11 16 16 C 1.53041 * 109.38005 * 305.58957 * 15 14 13 17 17 C 1.53034 * 109.53943 * 61.23756 * 16 15 14 18 18 H 1.08998 * 109.50094 * 58.58891 * 17 16 15 19 19 C 1.50698 * 109.49875 * 178.68268 * 17 16 15 20 20 H 1.07999 * 120.00152 * 359.83549 * 19 17 16 21 21 C 1.37882 * 120.00213 * 179.84130 * 19 17 16 22 22 N 1.31514 * 119.99968 * 359.97438 * 21 19 17 23 23 Si 1.86805 * 119.99883 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47112 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.46946 * 119.99873 * 23 21 19 26 26 H 1.48499 * 109.46744 * 239.99564 * 23 21 19 27 27 C 1.46920 * 120.63196 * 173.28100 * 13 11 10 28 28 N 1.34416 * 108.46037 * 359.97438 * 10 9 8 29 29 N 1.28747 * 109.58391 * 359.75379 * 28 10 9 30 30 H 1.08996 * 109.47144 * 262.14833 * 1 2 3 31 31 H 1.08999 * 109.47461 * 22.15779 * 1 2 3 32 32 H 1.09003 * 109.46520 * 142.15260 * 1 2 3 33 33 H 1.07998 * 119.97214 * 0.02562 * 3 2 1 34 34 H 1.07997 * 119.93506 * 179.97438 * 4 3 2 35 35 H 1.08000 * 119.97311 * 180.02562 * 5 4 3 36 36 H 1.07994 * 120.03249 * 180.25889 * 6 5 4 37 37 H 1.08004 * 126.60042 * 0.02562 * 9 8 7 38 38 H 1.09000 * 109.59102 * 353.41692 * 14 13 11 39 39 H 1.08997 * 109.59033 * 113.84891 * 14 13 11 40 40 H 1.09003 * 109.56743 * 185.55174 * 15 14 13 41 41 H 1.09000 * 109.38790 * 65.51158 * 15 14 13 42 42 H 1.09003 * 109.45858 * 301.21383 * 16 15 14 43 43 H 1.09008 * 109.44818 * 181.25260 * 16 15 14 44 44 H 0.96991 * 120.00075 * 179.97438 * 22 21 19 45 45 H 1.08997 * 109.58680 * 246.15537 * 27 13 11 46 46 H 1.09004 * 109.58705 * 6.57654 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1960 0.0000 4 6 3.5809 1.1968 -0.0005 5 6 4.2760 0.0012 -0.0001 6 6 3.5903 -1.1976 -0.0002 7 6 2.2018 -1.2016 -0.0005 8 7 1.5028 -2.4172 -0.0005 9 6 2.0322 -3.6510 -0.1494 10 6 0.9938 -4.5366 -0.0852 11 6 1.1032 -6.0032 -0.1989 12 8 2.1620 -6.5113 -0.5143 13 7 0.0296 -6.7801 0.0465 14 6 -1.2111 -6.1971 0.5751 15 6 -1.6186 -6.9547 1.8375 16 6 -1.7096 -8.4501 1.5252 17 6 -0.3405 -8.9627 1.0728 18 1 0.3940 -8.7793 1.8570 19 6 -0.4233 -10.4419 0.7966 20 1 -1.3582 -10.9651 0.9327 21 6 0.6945 -11.1273 0.3701 22 7 1.8329 -10.4901 0.2040 23 14 0.5915 -12.9606 0.0270 24 1 -0.7907 -13.4362 0.2883 25 1 0.9447 -13.2193 -1.3920 26 1 1.5391 -13.6839 0.9127 27 6 0.0797 -8.2270 -0.2035 28 7 -0.1441 -3.8456 0.1002 29 7 0.1203 -2.5870 0.1607 30 1 -0.3633 -0.1404 1.0180 31 1 -0.3634 0.9517 -0.3876 32 1 -0.3632 -0.8115 -0.6306 33 1 1.6584 2.1313 0.0004 34 1 4.1193 2.1331 -0.0010 35 1 5.3560 0.0048 -0.0001 36 1 4.1335 -2.1310 0.0043 37 1 3.0756 -3.8913 -0.2910 38 1 -1.0472 -5.1471 0.8178 39 1 -2.0017 -6.2828 -0.1703 40 1 -2.5883 -6.5953 2.1819 41 1 -0.8725 -6.7902 2.6149 42 1 -2.4384 -8.6115 0.7309 43 1 -2.0219 -8.9893 2.4196 44 1 2.6193 -10.9723 -0.0957 45 1 -0.6034 -8.4816 -1.0137 46 1 1.0951 -8.5160 -0.4745 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597903476.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:01 Heat of formation + Delta-G solvation = 86.671702 kcal Electronic energy + Delta-G solvation = -29103.629364 eV Core-core repulsion = 25188.194049 eV Total energy + Delta-G solvation = -3915.435315 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.66090 -40.94179 -40.29094 -38.36359 -35.92160 -35.16904 -34.01874 -33.49033 -32.14474 -31.55579 -30.83028 -28.10208 -27.25791 -26.62054 -25.22492 -24.23646 -23.43945 -22.68901 -22.51705 -21.36403 -20.28163 -19.15907 -18.39520 -17.68324 -17.43474 -17.16270 -16.68804 -16.59480 -16.26284 -15.99341 -15.83222 -15.29278 -15.08967 -14.89584 -14.70231 -14.56056 -14.35744 -14.22443 -13.97571 -13.85182 -13.57052 -13.37786 -13.07816 -12.89056 -12.78419 -12.50130 -12.32617 -12.28861 -12.23097 -12.11146 -12.04034 -11.68607 -11.44037 -11.24401 -10.96527 -10.68026 -10.64035 -10.51093 -9.88733 -9.54471 -9.40200 -8.08909 -6.25974 -0.64096 0.25213 0.47012 0.69773 0.83207 1.41412 1.42861 1.55134 2.05011 2.19025 2.43884 2.65330 2.99273 3.16547 3.20692 3.59768 3.68792 3.77726 3.91078 4.04135 4.12332 4.19951 4.28541 4.33252 4.37638 4.45700 4.49445 4.62346 4.69353 4.77202 4.78962 4.85936 4.90246 5.03363 5.09461 5.25040 5.25674 5.27871 5.28958 5.34943 5.38163 5.44333 5.49346 5.56509 5.63996 5.89186 5.91703 5.98745 6.33425 6.51930 6.73294 6.85972 7.16329 7.43708 8.95072 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023519 B = 0.002479 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.245468 B =11293.005469 C =12255.847235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.080 4.080 3 C -0.105 4.105 4 C -0.100 4.100 5 C -0.103 4.103 6 C -0.126 4.126 7 C 0.090 3.910 8 N -0.295 5.295 9 C 0.097 3.903 10 C -0.098 4.098 11 C 0.584 3.416 12 O -0.576 6.576 13 N -0.593 5.593 14 C 0.088 3.912 15 C -0.125 4.125 16 C -0.105 4.105 17 C 0.039 3.961 18 H -0.012 1.012 19 C -0.534 4.534 20 H 0.062 0.938 21 C 0.009 3.991 22 N -0.914 5.914 23 Si 0.959 3.041 24 H -0.262 1.262 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.125 3.875 28 N -0.212 5.212 29 N -0.063 5.063 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.160 0.840 34 H 0.164 0.836 35 H 0.163 0.837 36 H 0.144 0.856 37 H 0.229 0.771 38 H 0.127 0.873 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.045 0.955 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.261 0.739 45 H 0.041 0.959 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.681 28.373 -0.240 28.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.082 4.082 3 C -0.123 4.123 4 C -0.118 4.118 5 C -0.122 4.122 6 C -0.146 4.146 7 C -0.001 4.001 8 N -0.073 5.073 9 C -0.057 4.057 10 C -0.236 4.236 11 C 0.370 3.630 12 O -0.455 6.455 13 N -0.323 5.323 14 C -0.035 4.035 15 C -0.163 4.163 16 C -0.143 4.143 17 C 0.019 3.981 18 H 0.006 0.994 19 C -0.573 4.573 20 H 0.081 0.919 21 C -0.190 4.190 22 N -0.553 5.553 23 Si 0.785 3.215 24 H -0.186 1.186 25 H -0.207 1.207 26 H -0.208 1.208 27 C 0.003 3.997 28 N -0.085 5.085 29 N -0.041 5.041 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.178 0.822 34 H 0.182 0.818 35 H 0.181 0.819 36 H 0.162 0.838 37 H 0.246 0.754 38 H 0.144 0.856 39 H 0.090 0.910 40 H 0.118 0.882 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.059 0.941 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.009 28.725 -0.252 28.744 hybrid contribution 1.145 -2.071 -0.344 2.391 sum 2.153 26.654 -0.595 26.748 Atomic orbital electron populations 1.21021 0.89543 1.03679 1.03119 1.20011 0.97561 0.91254 0.99381 1.21369 0.94928 0.96993 0.98989 1.21784 0.94017 0.99718 0.96310 1.21420 1.01877 0.90636 0.98224 1.21277 0.90239 1.01696 1.01412 1.17978 0.91547 0.81536 1.09018 1.47662 1.07629 1.05589 1.46405 1.23610 1.02126 0.82704 0.97244 1.21293 0.90270 0.94974 1.17063 1.17258 0.83718 0.84342 0.77650 1.90787 1.28775 1.74729 1.51256 1.48320 1.13250 1.08993 1.61734 1.22468 0.85110 1.00157 0.95755 1.21838 1.02065 0.95529 0.96876 1.21534 0.97448 0.94916 1.00357 1.18903 0.92925 0.93978 0.92264 0.99425 1.21514 0.96270 0.93942 1.45544 0.91941 1.25906 0.95056 1.02891 0.95137 1.70086 1.01052 1.37298 1.46828 0.85483 0.78429 0.80012 0.77597 1.18589 1.20726 1.20807 1.21838 1.03191 0.75943 0.98716 1.74414 1.23985 0.99054 1.11056 1.82068 0.89794 1.09754 1.22486 0.90844 0.89230 0.91516 0.82213 0.81821 0.81923 0.83802 0.75429 0.85627 0.90961 0.88159 0.93606 0.92359 0.92757 0.93019 0.94075 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.91 8.65 71.24 0.62 -1.29 16 2 C -0.08 -1.30 5.89 -19.75 -0.12 -1.42 16 3 C -0.10 -1.04 9.67 22.25 0.22 -0.82 16 4 C -0.10 -0.73 10.04 22.29 0.22 -0.51 16 5 C -0.10 -0.93 10.04 22.25 0.22 -0.71 16 6 C -0.13 -1.81 9.47 22.39 0.21 -1.60 16 7 C 0.09 1.75 6.66 38.08 0.25 2.01 16 8 N -0.29 -7.42 3.79 -186.89 -0.71 -8.13 16 9 C 0.10 2.69 10.60 83.82 0.89 3.57 16 10 C -0.10 -3.43 6.68 40.81 0.27 -3.16 16 11 C 0.58 25.87 7.67 86.69 0.67 26.53 16 12 O -0.58 -29.57 16.30 -4.03 -0.07 -29.63 16 13 N -0.59 -26.48 2.98 -823.54 -2.45 -28.93 16 14 C 0.09 3.16 6.05 86.22 0.52 3.68 16 15 C -0.13 -4.37 6.07 30.53 0.19 -4.19 16 16 C -0.10 -4.38 5.11 30.62 0.16 -4.22 16 17 C 0.04 2.03 2.25 -11.46 -0.03 2.01 16 18 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 19 C -0.53 -30.14 8.56 25.60 0.22 -29.92 16 20 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 21 C 0.01 0.54 5.30 84.66 0.45 0.99 16 22 N -0.91 -56.01 11.39 21.45 0.24 -55.77 16 23 Si 0.96 44.84 29.54 68.60 2.03 46.87 16 24 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 25 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 26 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 27 C 0.12 6.53 5.41 86.36 0.47 7.00 16 28 N -0.21 -6.91 8.81 -49.99 -0.44 -7.35 16 29 N -0.06 -1.80 10.02 37.02 0.37 -1.43 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.09 0.98 8.03 -2.39 -0.02 0.96 16 32 H 0.07 1.41 5.93 -2.39 -0.01 1.39 16 33 H 0.16 0.73 8.05 -2.91 -0.02 0.71 16 34 H 0.16 0.16 8.06 -2.91 -0.02 0.14 16 35 H 0.16 0.59 8.06 -2.91 -0.02 0.56 16 36 H 0.14 1.74 6.87 -2.91 -0.02 1.72 16 37 H 0.23 4.96 7.20 -2.91 -0.02 4.93 16 38 H 0.13 4.25 4.14 -32.38 -0.13 4.12 16 39 H 0.07 2.41 8.14 -2.39 -0.02 2.40 16 40 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 41 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 44 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 45 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.08 5.12 5.11 -2.38 -0.01 5.11 16 Total: -1.00 -75.80 370.91 5.28 -70.52 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.88 Total: 15.90 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 5.43 Total: -2.04 kcal Atomic # 7 Polarization: -98.62 SS G_CDS: -2.99 Total: -101.61 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.07 Total: -29.63 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -75.80 5.28 -70.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597903476.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.189 kcal (2) G-P(sol) polarization free energy of solvation -75.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds