Wall clock time and date at job start Tue Mar 31 2020 22:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37748 * 119.96503 * 2 1 4 4 C 1.39682 * 119.92587 * 179.72538 * 3 2 1 5 5 C 1.47671 * 120.08079 * 180.27017 * 4 3 2 6 6 O 1.21572 * 120.00206 * 326.40157 * 5 4 3 7 7 N 1.34778 * 119.99801 * 146.39314 * 5 4 3 8 8 C 1.46929 * 120.63045 * 354.99451 * 7 5 4 9 9 C 1.53192 * 108.77357 * 233.58040 * 8 7 5 10 10 C 1.53048 * 109.31263 * 305.36397 * 9 8 7 11 11 C 1.53040 * 109.53812 * 61.36563 * 10 9 8 12 12 H 1.09004 * 109.49988 * 58.61808 * 11 10 9 13 13 C 1.50697 * 109.49708 * 178.68479 * 11 10 9 14 14 H 1.08000 * 120.00205 * 359.97438 * 13 11 10 15 15 C 1.37879 * 119.99694 * 179.97438 * 13 11 10 16 16 N 1.31508 * 120.00411 * 359.97438 * 15 13 11 17 17 Si 1.86809 * 119.99690 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46972 * 89.99967 * 17 15 13 19 19 H 1.48492 * 109.46941 * 209.99841 * 17 15 13 20 20 H 1.48495 * 109.46997 * 330.00052 * 17 15 13 21 21 C 1.46925 * 120.63036 * 174.70349 * 7 5 4 22 22 C 1.39722 * 119.84174 * 0.55126 * 4 3 2 23 23 C 1.37713 * 119.91695 * 359.47019 * 22 4 3 24 24 C 1.39028 * 119.95810 * 180.02562 * 2 1 3 25 25 N 1.39859 * 119.92523 * 0.02562 * 24 2 1 26 26 C 1.34807 * 126.85077 * 173.42951 * 25 24 2 27 27 N 1.30818 * 108.02352 * 179.83292 * 26 25 24 28 28 C 1.33296 * 109.84347 * 0.44340 * 27 26 25 29 29 N 1.30721 * 109.01486 * 359.72311 * 28 27 26 30 30 H 1.09007 * 109.46858 * 263.22664 * 1 2 3 31 31 H 1.09003 * 109.47225 * 23.22576 * 1 2 3 32 32 H 1.08998 * 109.47394 * 143.22575 * 1 2 3 33 33 H 1.08008 * 120.03691 * 0.02562 * 3 2 1 34 34 H 1.08993 * 109.58705 * 353.36469 * 8 7 5 35 35 H 1.09002 * 109.58622 * 113.65259 * 8 7 5 36 36 H 1.09002 * 109.49719 * 65.31065 * 9 8 7 37 37 H 1.08997 * 109.50066 * 185.41605 * 9 8 7 38 38 H 1.08997 * 109.46084 * 181.38548 * 10 9 8 39 39 H 1.09000 * 109.45552 * 301.35835 * 10 9 8 40 40 H 0.97003 * 120.00149 * 180.02562 * 16 15 13 41 41 H 1.08997 * 109.59166 * 246.20755 * 21 7 5 42 42 H 1.08999 * 109.58951 * 6.63740 * 21 7 5 43 43 H 1.07994 * 120.04079 * 179.74769 * 22 4 3 44 44 H 1.08004 * 119.95935 * 180.23262 * 23 22 4 45 45 H 1.08004 * 125.98715 * 359.97438 * 26 25 24 46 46 H 1.08000 * 125.48920 * 179.74198 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.1933 0.0000 4 6 3.5918 1.1924 0.0058 5 6 4.3328 2.4697 0.0118 6 8 3.8817 3.4369 -0.5704 7 7 5.5091 2.5633 0.6630 8 6 6.0141 1.4382 1.4618 9 6 6.3288 1.9389 2.8749 10 6 7.2875 3.1288 2.7886 11 6 6.6225 4.2663 2.0101 12 1 5.6972 4.5558 2.5082 13 6 7.5547 5.4490 1.9534 14 1 8.5244 5.3955 2.4257 15 6 7.1694 6.5996 1.2985 16 7 5.9887 6.6647 0.7229 17 14 8.3246 8.0660 1.2288 18 1 9.1831 7.9628 0.0215 19 1 7.5304 9.3191 1.1658 20 1 9.1785 8.0816 2.4436 21 6 6.3138 3.7899 0.5825 22 6 4.2863 -0.0200 -0.0001 23 6 3.5919 -1.2093 -0.0005 24 6 2.2012 -1.2045 -0.0005 25 7 1.4995 -2.4143 -0.0016 26 6 2.0208 -3.6513 -0.1257 27 7 1.0371 -4.5121 -0.0747 28 6 -0.1208 -3.8680 0.0705 29 7 0.1104 -2.5823 0.1202 30 1 -0.3633 -0.1212 1.0206 31 1 -0.3634 0.9444 -0.4053 32 1 -0.3634 -0.8231 -0.6152 33 1 1.6550 2.1287 0.0004 34 1 5.2565 0.6562 1.5114 35 1 6.9195 1.0413 1.0024 36 1 5.4060 2.2500 3.3646 37 1 6.7940 1.1379 3.4495 38 1 7.5324 3.4715 3.7939 39 1 8.2000 2.8234 2.2766 40 1 5.7179 7.4740 0.2619 41 1 7.2445 3.5824 0.0543 42 1 5.7540 4.5601 0.0519 43 1 5.3662 -0.0245 0.0003 44 1 4.1281 -2.1468 -0.0013 45 1 3.0675 -3.8899 -0.2439 46 1 -1.0931 -4.3333 0.1367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597910246.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:28 Heat of formation + Delta-G solvation = 101.516270 kcal Electronic energy + Delta-G solvation = -29204.205633 eV Core-core repulsion = 25289.414026 eV Total energy + Delta-G solvation = -3914.791607 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.70315 -40.40699 -38.73933 -36.74418 -34.61121 -33.59986 -33.02894 -31.87367 -31.51789 -30.18294 -29.65469 -27.24874 -25.62413 -25.09104 -23.96611 -23.01996 -21.99448 -21.90157 -21.18725 -19.92983 -18.67702 -18.49177 -16.96169 -16.38368 -16.20565 -16.08818 -15.65921 -15.16221 -14.68900 -14.63780 -14.43782 -14.31464 -13.92721 -13.74560 -13.65643 -13.30562 -13.10051 -13.02477 -12.68901 -12.52667 -12.42347 -12.19573 -11.89303 -11.64854 -11.32617 -11.18552 -11.01165 -10.78612 -10.56002 -10.40116 -10.36603 -10.28369 -10.17347 -9.93706 -9.45721 -9.17244 -9.12540 -8.94532 -8.50970 -8.48033 -7.82523 -6.02943 -4.12033 0.24491 1.00187 1.54862 1.82609 2.52271 3.00777 3.28126 3.36076 3.38047 3.49092 3.75573 3.86838 4.04533 4.36635 4.39912 4.49847 4.61972 4.68503 4.95016 5.09818 5.11604 5.25570 5.27901 5.41035 5.43266 5.56599 5.60622 5.63956 5.67476 5.85927 5.89669 5.92415 6.04816 6.10676 6.16119 6.24359 6.25393 6.36182 6.54698 6.60749 6.68911 6.79647 6.91836 7.07728 7.18768 7.58756 7.61244 7.81865 7.94443 8.14776 8.34120 8.72236 8.92178 9.53885 11.02301 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026202 B = 0.002463 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.367707 B =11367.340048 C =12037.651996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.080 4.080 3 C -0.048 4.048 4 C -0.110 4.110 5 C 0.544 3.456 6 O -0.527 6.527 7 N -0.597 5.597 8 C 0.092 3.908 9 C -0.134 4.134 10 C -0.111 4.111 11 C 0.040 3.960 12 H 0.030 0.970 13 C -0.522 4.522 14 H 0.058 0.942 15 C 0.063 3.937 16 N -0.880 5.880 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.112 3.888 22 C -0.078 4.078 23 C -0.135 4.135 24 C 0.149 3.851 25 N -0.322 5.322 26 C 0.259 3.741 27 N -0.538 5.538 28 C 0.197 3.803 29 N -0.306 5.306 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.144 0.856 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.264 0.736 41 H 0.045 0.955 42 H 0.124 0.876 43 H 0.149 0.851 44 H 0.137 0.863 45 H 0.223 0.777 46 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.234 -20.742 -0.833 21.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.082 4.082 3 C -0.067 4.067 4 C -0.114 4.114 5 C 0.331 3.669 6 O -0.404 6.404 7 N -0.329 5.329 8 C -0.032 4.032 9 C -0.172 4.172 10 C -0.149 4.149 11 C 0.021 3.979 12 H 0.048 0.952 13 C -0.560 4.560 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.517 5.517 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.008 4.008 22 C -0.097 4.097 23 C -0.156 4.156 24 C 0.056 3.944 25 N -0.105 5.105 26 C -0.036 4.036 27 N -0.264 5.264 28 C -0.105 4.105 29 N -0.132 5.132 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.162 0.838 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.142 0.858 43 H 0.167 0.833 44 H 0.154 0.846 45 H 0.239 0.761 46 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -8.122 -19.907 -1.178 21.533 hybrid contribution 0.965 0.753 0.002 1.224 sum -7.157 -19.155 -1.177 20.482 Atomic orbital electron populations 1.21037 0.89185 1.03289 1.03398 1.19663 0.97435 0.90429 1.00671 1.21116 0.92601 0.97798 0.95223 1.20358 0.94347 0.94289 1.02431 1.18149 0.81328 0.87090 0.80348 1.90828 1.67103 1.37726 1.44722 1.48435 1.20134 1.17311 1.46971 1.22210 0.99057 0.89504 0.92381 1.21959 1.00769 0.99076 0.95442 1.21638 0.97379 0.95291 1.00579 1.19042 0.96373 0.91728 0.90723 0.95222 1.21073 1.02114 0.97456 1.35399 0.92344 1.25059 0.95100 0.98612 0.95265 1.69884 1.18815 1.28175 1.34845 0.86594 0.80793 0.82232 0.78397 1.20630 1.21193 1.19935 1.22450 0.93171 0.83533 1.01657 1.21425 1.00900 0.90383 0.96950 1.20675 0.90551 0.99531 1.04869 1.17574 0.90293 0.82494 1.04074 1.47697 1.05235 1.05903 1.51658 1.26232 1.01113 0.80027 0.96240 1.70628 0.98270 1.33478 1.24017 1.26282 0.98722 0.87941 0.97505 1.78321 0.90051 1.18856 1.25980 0.90803 0.91712 0.89085 0.83808 0.89765 0.91727 0.92108 0.92135 0.92967 0.93141 0.92607 0.93674 0.85846 0.83304 0.84565 0.76114 0.76247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 8.71 36.00 0.31 -0.89 16 2 C -0.08 -0.95 5.89 -104.51 -0.62 -1.57 16 3 C -0.05 -0.66 9.22 -39.22 -0.36 -1.02 16 4 C -0.11 -1.61 5.36 -104.95 -0.56 -2.17 16 5 C 0.54 10.52 7.40 -12.41 -0.09 10.43 16 6 O -0.53 -12.56 16.20 5.30 0.09 -12.47 16 7 N -0.60 -11.32 2.97 -173.68 -0.52 -11.83 16 8 C 0.09 1.31 4.75 -3.71 -0.02 1.29 16 9 C -0.13 -2.05 6.08 -26.61 -0.16 -2.21 16 10 C -0.11 -2.12 5.10 -26.69 -0.14 -2.25 16 11 C 0.04 0.97 2.26 -91.42 -0.21 0.76 16 12 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 13 C -0.52 -13.83 8.56 -34.44 -0.29 -14.12 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 16 N -0.88 -25.30 11.41 55.43 0.63 -24.66 16 17 Si 0.89 20.96 29.54 -169.99 -5.02 15.93 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 C 0.11 2.60 5.44 -3.48 -0.02 2.58 16 22 C -0.08 -0.84 7.35 -39.22 -0.29 -1.13 16 23 C -0.14 -1.21 9.45 -39.47 -0.37 -1.58 16 24 C 0.15 1.60 6.67 -83.59 -0.56 1.04 16 25 N -0.32 -3.28 3.79 -11.77 -0.04 -3.33 16 26 C 0.26 2.15 11.96 -90.32 -1.08 1.07 16 27 N -0.54 -5.23 11.19 -15.73 -0.18 -5.41 16 28 C 0.20 1.76 13.03 -91.76 -1.20 0.56 16 29 N -0.31 -3.24 8.84 29.30 0.26 -2.98 16 30 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 31 H 0.06 0.64 8.03 -51.93 -0.42 0.22 16 32 H 0.09 1.00 5.75 -51.93 -0.30 0.70 16 33 H 0.14 2.03 7.97 -52.48 -0.42 1.61 16 34 H 0.08 0.99 4.29 -51.93 -0.22 0.77 16 35 H 0.06 0.81 8.04 -51.93 -0.42 0.39 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.12 3.40 5.14 -51.93 -0.27 3.13 16 43 H 0.15 1.40 5.82 -52.49 -0.31 1.09 16 44 H 0.14 0.71 6.82 -52.48 -0.36 0.35 16 45 H 0.22 0.87 7.13 -52.48 -0.37 0.50 16 46 H 0.22 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 367.91 15.07 5.54 5.54 Total: -1.00 -33.40 367.91 -10.98 -44.38 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.00 Total: 2.44 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -5.74 Total: -7.61 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.16 Total: -48.21 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.09 Total: -12.47 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.40 -10.98 -44.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597910246.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.892 kcal (2) G-P(sol) polarization free energy of solvation -33.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds