Wall clock time and date at job start Tue Mar 31 2020 22:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37748 * 119.96503 * 2 1 4 4 C 1.39682 * 119.92587 * 179.72538 * 3 2 1 5 5 C 1.47671 * 120.08079 * 180.27017 * 4 3 2 6 6 O 1.21572 * 120.00206 * 326.40157 * 5 4 3 7 7 N 1.34778 * 119.99801 * 146.39314 * 5 4 3 8 8 C 1.46929 * 120.63045 * 354.99451 * 7 5 4 9 9 C 1.53192 * 108.77357 * 233.58040 * 8 7 5 10 10 C 1.53048 * 109.31263 * 305.36397 * 9 8 7 11 11 C 1.53040 * 109.53812 * 61.36563 * 10 9 8 12 12 H 1.09004 * 109.49988 * 58.61808 * 11 10 9 13 13 C 1.50697 * 109.49708 * 178.68479 * 11 10 9 14 14 H 1.08000 * 120.00205 * 359.97438 * 13 11 10 15 15 C 1.37879 * 119.99694 * 179.97438 * 13 11 10 16 16 N 1.31508 * 120.00411 * 359.97438 * 15 13 11 17 17 Si 1.86809 * 119.99690 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46972 * 89.99967 * 17 15 13 19 19 H 1.48492 * 109.46941 * 209.99841 * 17 15 13 20 20 H 1.48495 * 109.46997 * 330.00052 * 17 15 13 21 21 C 1.46925 * 120.63036 * 174.70349 * 7 5 4 22 22 C 1.39722 * 119.84174 * 0.55126 * 4 3 2 23 23 C 1.37713 * 119.91695 * 359.47019 * 22 4 3 24 24 C 1.39028 * 119.95810 * 180.02562 * 2 1 3 25 25 N 1.39859 * 119.92523 * 0.02562 * 24 2 1 26 26 C 1.34807 * 126.85077 * 173.42951 * 25 24 2 27 27 N 1.30818 * 108.02352 * 179.83292 * 26 25 24 28 28 C 1.33296 * 109.84347 * 0.44340 * 27 26 25 29 29 N 1.30721 * 109.01486 * 359.72311 * 28 27 26 30 30 H 1.09007 * 109.46858 * 263.22664 * 1 2 3 31 31 H 1.09003 * 109.47225 * 23.22576 * 1 2 3 32 32 H 1.08998 * 109.47394 * 143.22575 * 1 2 3 33 33 H 1.08008 * 120.03691 * 0.02562 * 3 2 1 34 34 H 1.08993 * 109.58705 * 353.36469 * 8 7 5 35 35 H 1.09002 * 109.58622 * 113.65259 * 8 7 5 36 36 H 1.09002 * 109.49719 * 65.31065 * 9 8 7 37 37 H 1.08997 * 109.50066 * 185.41605 * 9 8 7 38 38 H 1.08997 * 109.46084 * 181.38548 * 10 9 8 39 39 H 1.09000 * 109.45552 * 301.35835 * 10 9 8 40 40 H 0.97003 * 120.00149 * 180.02562 * 16 15 13 41 41 H 1.08997 * 109.59166 * 246.20755 * 21 7 5 42 42 H 1.08999 * 109.58951 * 6.63740 * 21 7 5 43 43 H 1.07994 * 120.04079 * 179.74769 * 22 4 3 44 44 H 1.08004 * 119.95935 * 180.23262 * 23 22 4 45 45 H 1.08004 * 125.98715 * 359.97438 * 26 25 24 46 46 H 1.08000 * 125.48920 * 179.74198 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.1933 0.0000 4 6 3.5918 1.1924 0.0058 5 6 4.3328 2.4697 0.0118 6 8 3.8817 3.4369 -0.5704 7 7 5.5091 2.5633 0.6630 8 6 6.0141 1.4382 1.4618 9 6 6.3288 1.9389 2.8749 10 6 7.2875 3.1288 2.7886 11 6 6.6225 4.2663 2.0101 12 1 5.6972 4.5558 2.5082 13 6 7.5547 5.4490 1.9534 14 1 8.5244 5.3955 2.4257 15 6 7.1694 6.5996 1.2985 16 7 5.9887 6.6647 0.7229 17 14 8.3246 8.0660 1.2288 18 1 9.1831 7.9628 0.0215 19 1 7.5304 9.3191 1.1658 20 1 9.1785 8.0816 2.4436 21 6 6.3138 3.7899 0.5825 22 6 4.2863 -0.0200 -0.0001 23 6 3.5919 -1.2093 -0.0005 24 6 2.2012 -1.2045 -0.0005 25 7 1.4995 -2.4143 -0.0016 26 6 2.0208 -3.6513 -0.1257 27 7 1.0371 -4.5121 -0.0747 28 6 -0.1208 -3.8680 0.0705 29 7 0.1104 -2.5823 0.1202 30 1 -0.3633 -0.1212 1.0206 31 1 -0.3634 0.9444 -0.4053 32 1 -0.3634 -0.8231 -0.6152 33 1 1.6550 2.1287 0.0004 34 1 5.2565 0.6562 1.5114 35 1 6.9195 1.0413 1.0024 36 1 5.4060 2.2500 3.3646 37 1 6.7940 1.1379 3.4495 38 1 7.5324 3.4715 3.7939 39 1 8.2000 2.8234 2.2766 40 1 5.7179 7.4740 0.2619 41 1 7.2445 3.5824 0.0543 42 1 5.7540 4.5601 0.0519 43 1 5.3662 -0.0245 0.0003 44 1 4.1281 -2.1468 -0.0013 45 1 3.0675 -3.8899 -0.2439 46 1 -1.0931 -4.3333 0.1367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597910246.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:28 Heat of formation + Delta-G solvation = 83.626185 kcal Electronic energy + Delta-G solvation = -29204.981405 eV Core-core repulsion = 25289.414026 eV Total energy + Delta-G solvation = -3915.567379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.37865 -41.61574 -39.91230 -38.32107 -35.74249 -35.01511 -34.12514 -33.37903 -32.30958 -31.57108 -30.82326 -28.21113 -27.11262 -26.67571 -25.05546 -23.83771 -23.45622 -22.85448 -22.00128 -21.38605 -20.05999 -19.31762 -18.57409 -17.85108 -17.31663 -16.95360 -16.77262 -16.50476 -16.29589 -15.72834 -15.48597 -15.36215 -14.98172 -14.95491 -14.67467 -14.56780 -14.36459 -14.26208 -13.92237 -13.85658 -13.67495 -13.43609 -13.27611 -12.89259 -12.67776 -12.50467 -12.28082 -12.24051 -12.12080 -11.98935 -11.69528 -11.55823 -11.16676 -11.04569 -10.95645 -10.87300 -10.69182 -10.52888 -9.97694 -9.52697 -9.30857 -8.11327 -6.28675 -0.62066 0.14014 0.76930 1.13595 1.40199 1.40709 1.51527 1.74868 1.92286 2.13631 2.41647 2.61923 3.16692 3.29909 3.39763 3.48157 3.61625 3.85675 3.91706 4.00051 4.11548 4.17112 4.28285 4.31871 4.41578 4.59099 4.59497 4.73301 4.75055 4.76351 4.79532 4.84524 4.91574 5.07866 5.10235 5.14137 5.20581 5.25066 5.26322 5.28798 5.38094 5.44266 5.54399 5.58621 5.64051 5.89894 5.95584 5.99738 6.32259 6.61315 6.84854 6.96805 7.23940 7.41919 8.91932 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026202 B = 0.002463 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.367707 B =11367.340048 C =12037.651996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.091 4.091 3 C -0.061 4.061 4 C -0.132 4.132 5 C 0.537 3.463 6 O -0.592 6.592 7 N -0.599 5.599 8 C 0.086 3.914 9 C -0.129 4.129 10 C -0.106 4.106 11 C 0.038 3.962 12 H -0.018 1.018 13 C -0.534 4.534 14 H 0.064 0.936 15 C 0.008 3.992 16 N -0.916 5.916 17 Si 0.957 3.043 18 H -0.273 1.273 19 H -0.290 1.290 20 H -0.262 1.262 21 C 0.124 3.876 22 C -0.066 4.066 23 C -0.112 4.112 24 C 0.157 3.843 25 N -0.337 5.337 26 C 0.270 3.730 27 N -0.560 5.560 28 C 0.201 3.799 29 N -0.338 5.338 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.098 0.902 36 H 0.042 0.958 37 H 0.108 0.892 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.259 0.741 41 H 0.046 0.954 42 H 0.074 0.926 43 H 0.174 0.826 44 H 0.190 0.810 45 H 0.267 0.733 46 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.309 -25.289 -0.196 25.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.093 4.093 3 C -0.081 4.081 4 C -0.136 4.136 5 C 0.327 3.673 6 O -0.474 6.474 7 N -0.330 5.330 8 C -0.035 4.035 9 C -0.167 4.167 10 C -0.143 4.143 11 C 0.018 3.982 12 H 0.000 1.000 13 C -0.573 4.573 14 H 0.082 0.918 15 C -0.191 4.191 16 N -0.555 5.555 17 Si 0.782 3.218 18 H -0.199 1.199 19 H -0.216 1.216 20 H -0.187 1.187 21 C 0.002 3.998 22 C -0.085 4.085 23 C -0.133 4.133 24 C 0.063 3.937 25 N -0.120 5.120 26 C -0.024 4.024 27 N -0.286 5.286 28 C -0.101 4.101 29 N -0.163 5.163 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.116 0.884 36 H 0.061 0.939 37 H 0.127 0.873 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.092 0.908 43 H 0.191 0.809 44 H 0.208 0.792 45 H 0.283 0.717 46 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -6.183 -24.509 -0.506 25.282 hybrid contribution 0.283 2.026 -0.179 2.053 sum -5.900 -22.484 -0.685 23.255 Atomic orbital electron populations 1.20977 0.88857 1.03168 1.03288 1.19689 0.97831 0.90528 1.01290 1.20944 0.92625 0.97846 0.96679 1.19965 0.94166 0.93203 1.06284 1.18950 0.81128 0.88242 0.79009 1.90781 1.68597 1.40548 1.47428 1.48425 1.19829 1.17240 1.47461 1.22651 1.01360 0.88386 0.91091 1.21945 0.99275 0.98720 0.96720 1.21527 0.98330 0.94992 0.99474 1.18984 0.94272 0.93363 0.91538 1.00021 1.21532 1.02547 0.98558 1.34631 0.91821 1.25913 0.96449 1.01662 0.95081 1.70101 1.20893 1.28514 1.36004 0.85568 0.78801 0.78501 0.78886 1.19873 1.21582 1.18662 1.21839 0.92850 0.84682 1.00452 1.21616 1.01946 0.89232 0.95707 1.21126 0.89573 1.00730 1.01822 1.17753 0.91243 0.82277 1.02381 1.47727 1.05288 1.06145 1.52845 1.27188 1.02680 0.78805 0.93704 1.70690 0.98876 1.34097 1.24965 1.26918 0.99820 0.87526 0.95817 1.78301 0.90791 1.19901 1.27338 0.90914 0.91931 0.89056 0.86156 0.86425 0.88444 0.93866 0.87343 0.93222 0.91826 0.93207 0.93575 0.90762 0.80886 0.79244 0.71714 0.73574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.31 8.71 71.24 0.62 -1.69 16 2 C -0.09 -2.13 5.89 -19.79 -0.12 -2.25 16 3 C -0.06 -1.75 9.22 22.50 0.21 -1.54 16 4 C -0.13 -3.83 5.36 -20.08 -0.11 -3.94 16 5 C 0.54 21.82 7.40 86.73 0.64 22.46 16 6 O -0.59 -30.94 16.20 -3.94 -0.06 -31.00 16 7 N -0.60 -23.06 2.97 -821.66 -2.44 -25.50 16 8 C 0.09 2.18 4.75 86.36 0.41 2.59 16 9 C -0.13 -3.57 6.08 30.67 0.19 -3.39 16 10 C -0.11 -3.91 5.10 30.62 0.16 -3.75 16 11 C 0.04 1.88 2.26 -11.32 -0.03 1.85 16 12 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 13 C -0.53 -29.16 8.56 25.60 0.22 -28.94 16 14 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 15 C 0.01 0.46 5.30 84.66 0.45 0.91 16 16 N -0.92 -56.14 11.41 21.45 0.24 -55.90 16 17 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 20 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 21 C 0.12 6.05 5.44 86.51 0.47 6.53 16 22 C -0.07 -1.19 7.35 22.50 0.17 -1.02 16 23 C -0.11 -1.41 9.45 22.35 0.21 -1.20 16 24 C 0.16 2.87 6.67 38.25 0.26 3.13 16 25 N -0.34 -5.70 3.79 -191.16 -0.72 -6.43 16 26 C 0.27 3.19 11.96 180.24 2.16 5.35 16 27 N -0.56 -8.86 11.19 -203.68 -2.28 -11.14 16 28 C 0.20 3.04 13.03 180.75 2.35 5.40 16 29 N -0.34 -6.44 8.84 -61.21 -0.54 -6.98 16 30 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.06 1.33 8.03 -2.39 -0.02 1.31 16 32 H 0.09 1.99 5.75 -2.39 -0.01 1.97 16 33 H 0.12 3.86 7.97 -2.91 -0.02 3.84 16 34 H 0.12 2.24 4.29 -2.39 -0.01 2.23 16 35 H 0.10 1.92 8.04 -2.39 -0.02 1.90 16 36 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 41 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.07 4.42 5.14 -2.39 -0.01 4.41 16 43 H 0.17 2.29 5.82 -2.91 -0.02 2.28 16 44 H 0.19 0.38 6.82 -2.91 -0.02 0.36 16 45 H 0.27 0.21 7.13 -2.91 -0.02 0.19 16 46 H 0.25 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -82.62 367.91 5.49 -77.13 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 1.01 Total: 13.11 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 8.26 Total: 0.50 kcal Atomic # 7 Polarization: -100.22 SS G_CDS: -5.74 Total: -105.95 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.06 Total: -31.00 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -82.62 5.49 -77.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597910246.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.757 kcal (2) G-P(sol) polarization free energy of solvation -82.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds