Wall clock time and date at job start Tue Mar 31 2020 22:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38308 * 119.96488 * 2 1 4 4 C 1.38255 * 120.12889 * 180.02562 * 3 2 1 5 5 C 1.38145 * 120.06459 * 359.76169 * 4 3 2 6 6 C 1.38800 * 119.93456 * 0.51487 * 5 4 3 7 7 N 1.40226 * 120.06863 * 179.73787 * 6 5 4 8 8 C 1.35086 * 126.60991 * 359.72822 * 7 6 5 9 9 C 1.36619 * 106.79158 * 180.23754 * 8 7 6 10 10 C 1.47513 * 125.76318 * 179.73479 * 9 8 7 11 11 O 1.21597 * 120.00239 * 353.30499 * 10 9 8 12 12 N 1.34774 * 119.99643 * 173.29982 * 10 9 8 13 13 C 1.46928 * 120.63437 * 3.83320 * 12 10 9 14 14 C 1.52753 * 109.00941 * 233.58246 * 13 12 10 15 15 C 1.53043 * 109.38818 * 305.58620 * 14 13 12 16 16 C 1.53043 * 109.53197 * 61.24074 * 15 14 13 17 17 H 1.08994 * 109.50401 * 58.58953 * 16 15 14 18 18 C 1.50705 * 109.49310 * 178.68809 * 16 15 14 19 19 H 1.07993 * 120.00009 * 359.83526 * 18 16 15 20 20 C 1.37880 * 119.99929 * 179.83927 * 18 16 15 21 21 N 1.31521 * 120.00000 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 120.00224 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47134 * 59.99749 * 22 20 18 24 24 H 1.48498 * 109.47442 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46951 * 299.99847 * 22 20 18 26 26 C 1.46928 * 120.62876 * 184.11617 * 12 10 9 27 27 N 1.34414 * 108.46678 * 359.60726 * 9 8 7 28 28 N 1.28751 * 109.58062 * 0.40526 * 27 9 8 29 29 C 1.38098 * 119.96927 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46871 * 269.98095 * 1 2 3 31 31 H 1.09001 * 109.47466 * 29.97613 * 1 2 3 32 32 H 1.09003 * 109.47041 * 149.97857 * 1 2 3 33 33 H 1.07994 * 119.93184 * 0.02562 * 3 2 1 34 34 H 1.07997 * 119.96408 * 180.02562 * 4 3 2 35 35 H 1.07999 * 120.03022 * 180.25131 * 5 4 3 36 36 H 1.07996 * 126.59869 * 359.97438 * 8 7 6 37 37 H 1.08996 * 109.58310 * 353.41884 * 13 12 10 38 38 H 1.09002 * 109.58443 * 113.84066 * 13 12 10 39 39 H 1.08999 * 109.56385 * 185.54996 * 14 13 12 40 40 H 1.09004 * 109.38934 * 65.51563 * 14 13 12 41 41 H 1.08998 * 109.45671 * 301.22890 * 15 14 13 42 42 H 1.08997 * 109.45216 * 181.25240 * 15 14 13 43 43 H 0.96996 * 120.00202 * 179.97438 * 21 20 18 44 44 H 1.09007 * 109.58359 * 246.15760 * 26 12 10 45 45 H 1.09003 * 109.58982 * 6.57559 * 26 12 10 46 46 H 1.08002 * 120.02808 * 359.95697 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5803 1.2022 -0.0005 5 6 4.2758 0.0086 0.0039 6 6 3.5853 -1.1955 -0.0019 7 7 4.2885 -2.4087 -0.0030 8 6 5.6306 -2.5619 -0.0040 9 6 5.8744 -3.9062 -0.0102 10 6 7.2059 -4.5409 -0.0190 11 8 8.2042 -3.8579 -0.1439 12 7 7.3160 -5.8777 0.1116 13 6 6.1173 -6.7246 0.1795 14 6 6.1934 -7.5952 1.4323 15 6 7.5124 -8.3714 1.4322 16 6 8.6848 -7.3880 1.4534 17 1 8.6129 -6.7551 2.3378 18 6 9.9826 -8.1533 1.4858 19 1 9.9727 -9.2331 1.4935 20 6 11.1827 -7.4747 1.5058 21 7 11.1949 -6.1596 1.4960 22 14 12.7915 -8.4233 1.5467 23 1 12.8876 -9.2870 0.3426 24 1 13.9288 -7.4686 1.5639 25 1 12.8369 -9.2684 2.7670 26 6 8.6371 -6.5155 0.1952 27 7 4.6959 -4.5526 -0.0042 28 7 3.7342 -3.6966 -0.0032 29 6 2.1969 -1.1963 -0.0005 30 1 -0.3633 -0.0003 1.0277 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6562 2.1325 0.0004 34 1 4.1171 2.1393 -0.0001 35 1 5.3558 0.0123 0.0076 36 1 6.3687 -1.7735 -0.0045 37 1 5.2281 -6.0960 0.2264 38 1 6.0701 -7.3625 -0.7032 39 1 5.3588 -8.2963 1.4408 40 1 6.1446 -6.9609 2.3173 41 1 7.5712 -8.9872 0.5348 42 1 7.5579 -9.0098 2.3145 43 1 12.0391 -5.6823 1.5104 44 1 8.7996 -7.1360 -0.6862 45 1 9.4099 -5.7489 0.2524 46 1 1.6568 -2.1316 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:08 Heat of formation + Delta-G solvation = 99.110164 kcal Electronic energy + Delta-G solvation = -28750.999902 eV Core-core repulsion = 24836.103959 eV Total energy + Delta-G solvation = -3914.895943 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.52892 -39.91024 -39.03161 -36.61748 -35.23023 -33.33138 -32.88562 -31.70182 -31.26397 -30.29683 -29.44506 -27.50808 -25.44370 -24.92414 -24.47846 -23.15198 -22.01188 -21.66813 -21.09952 -20.03189 -18.81605 -17.78336 -16.89942 -16.35746 -16.26564 -15.99883 -15.71209 -15.35089 -14.92870 -14.52827 -14.41659 -14.26884 -14.07399 -13.78281 -13.55523 -13.30350 -12.92285 -12.83774 -12.72460 -12.58519 -12.27956 -12.13954 -12.05041 -11.90575 -11.56136 -11.40949 -11.30137 -10.92212 -10.67269 -10.41731 -10.19632 -9.92938 -9.71392 -9.56188 -9.44205 -9.32730 -9.04013 -8.82116 -8.78937 -8.38490 -7.67185 -5.95963 -4.04213 0.17693 0.78021 1.52163 1.77176 1.80240 3.20829 3.34639 3.40345 3.42032 3.58689 3.76843 4.02382 4.17909 4.29195 4.46220 4.51537 4.61236 4.71059 4.79159 4.81553 4.95308 5.13930 5.15763 5.19674 5.34123 5.35568 5.46005 5.59024 5.74828 5.76803 5.81929 5.88251 5.99237 6.02215 6.15052 6.30619 6.45016 6.53231 6.62973 6.76619 6.80361 6.96936 7.06646 7.21830 7.35553 7.67507 7.83554 7.92786 8.04348 8.30388 8.43038 8.81513 8.99959 9.60894 11.09494 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024091 B = 0.002335 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.999216 B =11990.305153 C =12911.004371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.066 4.066 3 C -0.119 4.119 4 C -0.090 4.090 5 C -0.132 4.132 6 C 0.144 3.856 7 N -0.314 5.314 8 C 0.086 3.914 9 C -0.071 4.071 10 C 0.587 3.413 11 O -0.536 6.536 12 N -0.584 5.584 13 C 0.070 3.930 14 C -0.130 4.130 15 C -0.112 4.112 16 C 0.040 3.960 17 H 0.028 0.972 18 C -0.519 4.519 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.882 5.882 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.278 1.278 26 C 0.112 3.888 27 N -0.195 5.195 28 N -0.066 5.066 29 C -0.108 4.108 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.207 0.793 37 H 0.129 0.871 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.264 0.736 44 H 0.045 0.955 45 H 0.123 0.877 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.038 15.400 -3.733 26.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.066 4.066 3 C -0.138 4.138 4 C -0.109 4.109 5 C -0.153 4.153 6 C 0.052 3.948 7 N -0.093 5.093 8 C -0.066 4.066 9 C -0.209 4.209 10 C 0.371 3.629 11 O -0.413 6.413 12 N -0.314 5.314 13 C -0.054 4.054 14 C -0.168 4.168 15 C -0.150 4.150 16 C 0.021 3.979 17 H 0.047 0.953 18 C -0.558 4.558 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.520 5.520 22 Si 0.721 3.279 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.008 4.008 27 N -0.067 5.067 28 N -0.043 5.043 29 C -0.128 4.128 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.149 0.851 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.224 0.776 37 H 0.145 0.855 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.141 0.859 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -21.618 15.037 -3.805 26.607 hybrid contribution 1.835 -0.003 0.075 1.837 sum -19.782 15.034 -3.729 25.125 Atomic orbital electron populations 1.20838 0.90164 1.03365 1.02929 1.19842 0.96660 0.92088 0.98036 1.21218 0.94258 0.97918 1.00413 1.21016 0.94174 0.97427 0.98296 1.20998 1.00848 0.90515 1.02910 1.17608 0.91663 0.81606 1.03904 1.47577 1.05270 1.07152 1.49313 1.23368 0.85274 0.99299 0.98700 1.21929 0.94282 0.90805 1.13865 1.16791 0.84946 0.82788 0.78369 1.90817 1.36379 1.62677 1.51418 1.48335 1.09719 1.04727 1.68610 1.22596 0.89936 0.95083 0.97795 1.21824 0.98703 0.98528 0.97788 1.21650 0.94398 0.98479 1.00433 1.18967 0.92338 0.92768 0.93797 0.95344 1.21058 0.90168 0.92902 1.51634 0.92376 1.25059 0.99228 0.94903 0.94883 1.69874 1.26613 1.06025 1.49460 0.86643 0.83064 0.79633 0.78569 1.20244 1.21291 1.20322 1.22378 0.81249 0.98483 0.98698 1.74259 0.97934 1.23796 1.10757 1.82036 1.17907 0.82072 1.22302 1.20833 0.91224 0.99544 1.01199 0.90579 0.91019 0.91004 0.85126 0.84505 0.84569 0.77594 0.85467 0.92472 0.92283 0.92554 0.93220 0.93179 0.92629 0.93671 0.85902 0.84077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.53 10.01 36.01 0.36 -0.17 16 2 C -0.07 -0.45 5.88 -104.65 -0.62 -1.07 16 3 C -0.12 -0.71 9.70 -39.55 -0.38 -1.09 16 4 C -0.09 -0.56 10.04 -39.61 -0.40 -0.96 16 5 C -0.13 -1.07 9.47 -39.41 -0.37 -1.44 16 6 C 0.14 1.49 6.69 -83.58 -0.56 0.93 16 7 N -0.31 -4.07 3.82 -10.42 -0.04 -4.11 16 8 C 0.09 1.19 10.61 -16.70 -0.18 1.01 16 9 C -0.07 -1.23 6.77 -83.54 -0.57 -1.79 16 10 C 0.59 12.47 7.69 -12.48 -0.10 12.37 16 11 O -0.54 -12.91 16.30 5.28 0.09 -12.82 16 12 N -0.58 -12.64 2.98 -174.27 -0.52 -13.16 16 13 C 0.07 1.29 6.28 -3.94 -0.02 1.26 16 14 C -0.13 -2.37 6.06 -26.84 -0.16 -2.53 16 15 C -0.11 -2.36 5.11 -26.69 -0.14 -2.50 16 16 C 0.04 1.03 2.25 -91.65 -0.21 0.82 16 17 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 18 C -0.52 -14.30 8.56 -34.44 -0.29 -14.60 16 19 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 20 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 21 N -0.88 -25.86 11.39 55.43 0.63 -25.23 16 22 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.11 2.80 5.39 -3.71 -0.02 2.78 16 27 N -0.19 -3.22 8.63 32.85 0.28 -2.94 16 28 N -0.07 -0.98 13.12 60.35 0.79 -0.19 16 29 C -0.11 -0.98 9.33 -39.41 -0.37 -1.35 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 32 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 33 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 34 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 35 H 0.14 0.92 6.81 -52.49 -0.36 0.56 16 36 H 0.21 2.24 7.13 -52.49 -0.37 1.87 16 37 H 0.13 2.21 3.62 -130.09 -0.47 1.74 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.04 1.12 8.14 -51.92 -0.42 0.70 16 45 H 0.12 3.51 5.14 -51.93 -0.27 3.25 16 46 H 0.14 1.29 7.73 -52.49 -0.41 0.88 16 LS Contribution 376.15 15.07 5.67 5.67 Total: -1.00 -32.86 376.15 -8.72 -41.58 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.48 Total: 1.43 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -4.11 Total: -6.68 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 1.15 Total: -45.62 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.09 Total: -12.82 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.86 -8.72 -41.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.689 kcal (2) G-P(sol) polarization free energy of solvation -32.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds