Wall clock time and date at job start Tue Mar 31 2020 22:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38308 * 119.96488 * 2 1 4 4 C 1.38255 * 120.12889 * 180.02562 * 3 2 1 5 5 C 1.38145 * 120.06459 * 359.76169 * 4 3 2 6 6 C 1.38800 * 119.93456 * 0.51487 * 5 4 3 7 7 N 1.40226 * 120.06863 * 179.73787 * 6 5 4 8 8 C 1.35086 * 126.60991 * 359.72822 * 7 6 5 9 9 C 1.36619 * 106.79158 * 180.23754 * 8 7 6 10 10 C 1.47513 * 125.76318 * 179.73479 * 9 8 7 11 11 O 1.21597 * 120.00239 * 353.30499 * 10 9 8 12 12 N 1.34774 * 119.99643 * 173.29982 * 10 9 8 13 13 C 1.46928 * 120.63437 * 3.83320 * 12 10 9 14 14 C 1.52753 * 109.00941 * 233.58246 * 13 12 10 15 15 C 1.53043 * 109.38818 * 305.58620 * 14 13 12 16 16 C 1.53043 * 109.53197 * 61.24074 * 15 14 13 17 17 H 1.08994 * 109.50401 * 58.58953 * 16 15 14 18 18 C 1.50705 * 109.49310 * 178.68809 * 16 15 14 19 19 H 1.07993 * 120.00009 * 359.83526 * 18 16 15 20 20 C 1.37880 * 119.99929 * 179.83927 * 18 16 15 21 21 N 1.31521 * 120.00000 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 120.00224 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47134 * 59.99749 * 22 20 18 24 24 H 1.48498 * 109.47442 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46951 * 299.99847 * 22 20 18 26 26 C 1.46928 * 120.62876 * 184.11617 * 12 10 9 27 27 N 1.34414 * 108.46678 * 359.60726 * 9 8 7 28 28 N 1.28751 * 109.58062 * 0.40526 * 27 9 8 29 29 C 1.38098 * 119.96927 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46871 * 269.98095 * 1 2 3 31 31 H 1.09001 * 109.47466 * 29.97613 * 1 2 3 32 32 H 1.09003 * 109.47041 * 149.97857 * 1 2 3 33 33 H 1.07994 * 119.93184 * 0.02562 * 3 2 1 34 34 H 1.07997 * 119.96408 * 180.02562 * 4 3 2 35 35 H 1.07999 * 120.03022 * 180.25131 * 5 4 3 36 36 H 1.07996 * 126.59869 * 359.97438 * 8 7 6 37 37 H 1.08996 * 109.58310 * 353.41884 * 13 12 10 38 38 H 1.09002 * 109.58443 * 113.84066 * 13 12 10 39 39 H 1.08999 * 109.56385 * 185.54996 * 14 13 12 40 40 H 1.09004 * 109.38934 * 65.51563 * 14 13 12 41 41 H 1.08998 * 109.45671 * 301.22890 * 15 14 13 42 42 H 1.08997 * 109.45216 * 181.25240 * 15 14 13 43 43 H 0.96996 * 120.00202 * 179.97438 * 21 20 18 44 44 H 1.09007 * 109.58359 * 246.15760 * 26 12 10 45 45 H 1.09003 * 109.58982 * 6.57559 * 26 12 10 46 46 H 1.08002 * 120.02808 * 359.95697 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5803 1.2022 -0.0005 5 6 4.2758 0.0086 0.0039 6 6 3.5853 -1.1955 -0.0019 7 7 4.2885 -2.4087 -0.0030 8 6 5.6306 -2.5619 -0.0040 9 6 5.8744 -3.9062 -0.0102 10 6 7.2059 -4.5409 -0.0190 11 8 8.2042 -3.8579 -0.1439 12 7 7.3160 -5.8777 0.1116 13 6 6.1173 -6.7246 0.1795 14 6 6.1934 -7.5952 1.4323 15 6 7.5124 -8.3714 1.4322 16 6 8.6848 -7.3880 1.4534 17 1 8.6129 -6.7551 2.3378 18 6 9.9826 -8.1533 1.4858 19 1 9.9727 -9.2331 1.4935 20 6 11.1827 -7.4747 1.5058 21 7 11.1949 -6.1596 1.4960 22 14 12.7915 -8.4233 1.5467 23 1 12.8876 -9.2870 0.3426 24 1 13.9288 -7.4686 1.5639 25 1 12.8369 -9.2684 2.7670 26 6 8.6371 -6.5155 0.1952 27 7 4.6959 -4.5526 -0.0042 28 7 3.7342 -3.6966 -0.0032 29 6 2.1969 -1.1963 -0.0005 30 1 -0.3633 -0.0003 1.0277 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6562 2.1325 0.0004 34 1 4.1171 2.1393 -0.0001 35 1 5.3558 0.0123 0.0076 36 1 6.3687 -1.7735 -0.0045 37 1 5.2281 -6.0960 0.2264 38 1 6.0701 -7.3625 -0.7032 39 1 5.3588 -8.2963 1.4408 40 1 6.1446 -6.9609 2.3173 41 1 7.5712 -8.9872 0.5348 42 1 7.5579 -9.0098 2.3145 43 1 12.0391 -5.6823 1.5104 44 1 8.7996 -7.1360 -0.6862 45 1 9.4099 -5.7489 0.2524 46 1 1.6568 -2.1316 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:07 Heat of formation + Delta-G solvation = 80.232145 kcal Electronic energy + Delta-G solvation = -28751.818515 eV Core-core repulsion = 24836.103959 eV Total energy + Delta-G solvation = -3915.714555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.67927 -40.92549 -40.32540 -38.37577 -36.18736 -35.21987 -33.59164 -33.37327 -32.41397 -31.67464 -30.81539 -28.00591 -27.24372 -26.59362 -25.53402 -24.31051 -23.42391 -23.00591 -21.92639 -21.51156 -20.29567 -19.06376 -18.37239 -17.75430 -17.40614 -17.17205 -16.97856 -16.60118 -16.23211 -16.01776 -15.90834 -15.28429 -15.05714 -14.87949 -14.74682 -14.56587 -14.40778 -14.19092 -13.90867 -13.65545 -13.53420 -13.48275 -13.16992 -12.94612 -12.83881 -12.59927 -12.46911 -12.27922 -12.15845 -12.15296 -12.07932 -11.68886 -11.39190 -11.27042 -10.96934 -10.71536 -10.62443 -10.49101 -9.90744 -9.57840 -9.41585 -8.09620 -6.26538 -0.68355 0.22861 0.43259 0.68908 0.78403 1.42477 1.44379 1.52536 2.01777 2.20243 2.43759 2.62931 2.93605 3.12630 3.19191 3.58207 3.69337 3.79208 3.93814 3.97495 4.11983 4.20348 4.23447 4.24850 4.36049 4.39406 4.49804 4.61936 4.78249 4.79312 4.84354 4.85436 4.87173 5.06275 5.09692 5.21156 5.22071 5.25663 5.29199 5.33527 5.37488 5.40020 5.53740 5.56789 5.64862 5.88020 5.89195 5.97675 6.32764 6.49742 6.70854 6.84635 7.14931 7.43023 8.94340 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024091 B = 0.002335 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.999216 B =11990.305153 C =12911.004371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.070 4.070 3 C -0.108 4.108 4 C -0.089 4.089 5 C -0.135 4.135 6 C 0.104 3.896 7 N -0.297 5.297 8 C 0.103 3.897 9 C -0.098 4.098 10 C 0.584 3.416 11 O -0.576 6.576 12 N -0.592 5.592 13 C 0.068 3.932 14 C -0.122 4.122 15 C -0.105 4.105 16 C 0.039 3.961 17 H -0.012 1.012 18 C -0.536 4.536 19 H 0.063 0.937 20 C 0.010 3.990 21 N -0.915 5.915 22 Si 0.960 3.040 23 H -0.268 1.268 24 H -0.287 1.287 25 H -0.269 1.269 26 C 0.125 3.875 27 N -0.206 5.206 28 N -0.071 5.071 29 C -0.119 4.119 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.162 0.838 34 H 0.167 0.833 35 H 0.147 0.853 36 H 0.234 0.766 37 H 0.144 0.856 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.044 0.956 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.261 0.739 44 H 0.039 0.961 45 H 0.084 0.916 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.207 16.787 -4.002 28.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.070 4.070 3 C -0.127 4.127 4 C -0.107 4.107 5 C -0.155 4.155 6 C 0.014 3.986 7 N -0.076 5.076 8 C -0.051 4.051 9 C -0.236 4.236 10 C 0.371 3.629 11 O -0.456 6.456 12 N -0.321 5.321 13 C -0.055 4.055 14 C -0.160 4.160 15 C -0.143 4.143 16 C 0.020 3.980 17 H 0.006 0.994 18 C -0.575 4.575 19 H 0.081 0.919 20 C -0.190 4.190 21 N -0.554 5.554 22 Si 0.785 3.215 23 H -0.193 1.193 24 H -0.213 1.213 25 H -0.194 1.194 26 C 0.003 3.997 27 N -0.079 5.079 28 N -0.049 5.049 29 C -0.139 4.139 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.180 0.820 34 H 0.184 0.816 35 H 0.165 0.835 36 H 0.250 0.750 37 H 0.160 0.840 38 H 0.088 0.912 39 H 0.117 0.883 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.102 0.898 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -23.858 16.413 -4.072 29.244 hybrid contribution 2.343 -0.209 0.161 2.358 sum -21.516 16.204 -3.911 27.217 Atomic orbital electron populations 1.20901 0.88501 1.04232 1.03631 1.20156 0.97923 0.91652 0.97307 1.21667 0.94392 0.98729 0.97880 1.21421 0.94576 0.97756 0.96957 1.21279 1.01643 0.90327 1.02292 1.18011 0.92292 0.81021 1.07314 1.47683 1.04976 1.07506 1.47398 1.23659 0.86100 0.98638 0.96663 1.21351 0.92790 0.92011 1.17488 1.17220 0.86157 0.82427 0.77131 1.90774 1.38234 1.63441 1.53141 1.48342 1.09430 1.05520 1.68837 1.22846 0.89017 0.95163 0.98432 1.21785 0.98361 0.98708 0.97177 1.21543 0.94094 0.97719 1.00949 1.18899 0.93855 0.93105 0.92126 0.99429 1.21457 0.91361 0.93307 1.51336 0.91927 1.25909 1.02880 0.95686 0.94493 1.70064 1.27157 1.07693 1.50450 0.85578 0.78576 0.78287 0.79027 1.19255 1.21262 1.19406 1.21849 0.82405 0.97233 0.98179 1.74081 0.97705 1.24589 1.11510 1.81945 1.17461 0.82877 1.22587 1.20944 0.90891 1.00325 1.01748 0.89864 0.89165 0.91207 0.82007 0.81572 0.83523 0.75017 0.83982 0.91167 0.88308 0.93680 0.92432 0.92778 0.92957 0.94230 0.89757 0.84925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.01 71.24 0.71 -0.04 16 2 C -0.07 -0.79 5.88 -19.88 -0.12 -0.91 16 3 C -0.11 -0.88 9.70 22.29 0.22 -0.66 16 4 C -0.09 -0.80 10.04 22.25 0.22 -0.57 16 5 C -0.13 -1.90 9.47 22.38 0.21 -1.69 16 6 C 0.10 2.03 6.69 38.08 0.25 2.29 16 7 N -0.30 -7.55 3.82 -186.89 -0.71 -8.27 16 8 C 0.10 2.84 10.61 83.81 0.89 3.73 16 9 C -0.10 -3.46 6.77 40.82 0.28 -3.19 16 10 C 0.58 25.93 7.69 86.69 0.67 26.59 16 11 O -0.58 -29.31 16.30 -4.02 -0.07 -29.38 16 12 N -0.59 -26.61 2.98 -823.51 -2.45 -29.06 16 13 C 0.07 2.49 6.28 86.22 0.54 3.03 16 14 C -0.12 -4.35 6.06 30.53 0.19 -4.16 16 15 C -0.11 -4.44 5.11 30.62 0.16 -4.29 16 16 C 0.04 2.09 2.25 -11.46 -0.03 2.06 16 17 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 18 C -0.54 -30.31 8.56 25.60 0.22 -30.10 16 19 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 20 C 0.01 0.56 5.30 84.65 0.45 1.01 16 21 N -0.92 -56.05 11.39 21.45 0.24 -55.80 16 22 Si 0.96 44.82 29.54 68.60 2.03 46.85 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 24 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 26 C 0.13 6.58 5.39 86.36 0.47 7.05 16 27 N -0.21 -6.84 8.63 -49.98 -0.43 -7.27 16 28 N -0.07 -2.10 13.12 37.02 0.49 -1.61 16 29 C -0.12 -2.03 9.33 22.38 0.21 -1.82 16 30 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.09 0.26 8.08 -2.39 -0.02 0.24 16 32 H 0.07 0.49 8.08 -2.39 -0.02 0.47 16 33 H 0.16 0.32 8.06 -2.91 -0.02 0.30 16 34 H 0.17 0.52 8.06 -2.91 -0.02 0.50 16 35 H 0.15 1.67 6.81 -2.91 -0.02 1.65 16 36 H 0.23 4.90 7.13 -2.91 -0.02 4.88 16 37 H 0.14 4.90 3.62 -103.52 -0.37 4.52 16 38 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 40 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.05 2.20 8.14 -2.39 -0.02 2.19 16 43 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 44 H 0.04 2.06 8.14 -2.38 -0.02 2.04 16 45 H 0.08 5.14 5.14 -2.39 -0.01 5.13 16 46 H 0.13 2.39 7.73 -2.91 -0.02 2.37 16 Total: -1.00 -75.75 376.15 5.26 -70.49 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.64 Total: 15.71 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 5.53 Total: -1.66 kcal Atomic # 7 Polarization: -99.15 SS G_CDS: -2.87 Total: -102.01 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.07 Total: -29.38 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -75.75 5.26 -70.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.721 kcal (2) G-P(sol) polarization free energy of solvation -75.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds