Wall clock time and date at job start Tue Mar 31 2020 22:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38275 * 119.93219 * 2 1 4 4 C 1.38119 * 120.06633 * 180.02562 * 3 2 1 5 5 C 1.38829 * 119.93375 * 0.02562 * 4 3 2 6 6 N 1.40225 * 120.06411 * 179.97438 * 5 4 3 7 7 C 1.35080 * 126.61155 * 180.31655 * 6 5 4 8 8 C 1.36620 * 106.79144 * 180.16770 * 7 6 5 9 9 C 1.47512 * 125.76382 * 179.83695 * 8 7 6 10 10 O 1.21600 * 120.00382 * 352.66626 * 9 8 7 11 11 N 1.34780 * 120.00153 * 172.65892 * 9 8 7 12 12 C 1.46928 * 120.62829 * 352.69630 * 11 9 8 13 13 C 1.53189 * 108.89135 * 233.55424 * 12 11 9 14 14 C 1.53070 * 109.29785 * 305.58032 * 13 12 11 15 15 C 1.53039 * 109.65876 * 61.15099 * 14 13 12 16 16 H 1.08994 * 109.49631 * 58.65742 * 15 14 13 17 17 C 1.50704 * 109.49249 * 178.75316 * 15 14 13 18 18 H 1.07995 * 120.00446 * 359.83772 * 17 15 14 19 19 C 1.37879 * 119.99680 * 179.83847 * 17 15 14 20 20 N 1.31521 * 120.00038 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 120.00384 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46745 * 60.00016 * 21 19 17 23 23 H 1.48497 * 109.47534 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46892 * 300.00409 * 21 19 17 25 25 C 1.46923 * 120.63216 * 172.71159 * 11 9 8 26 26 N 1.34413 * 108.47075 * 359.57601 * 8 7 6 27 27 N 1.28749 * 109.57629 * 0.26374 * 26 8 7 28 28 C 1.38821 * 119.86940 * 0.25082 * 5 4 3 29 29 C 1.38125 * 119.93281 * 359.51816 * 28 5 4 30 30 H 1.08996 * 109.47630 * 90.00042 * 1 2 3 31 31 H 1.09004 * 109.46503 * 209.99769 * 1 2 3 32 32 H 1.08994 * 109.47281 * 329.99161 * 1 2 3 33 33 H 1.08004 * 119.96842 * 0.02705 * 3 2 1 34 34 H 1.08001 * 120.03616 * 179.97438 * 4 3 2 35 35 H 1.08001 * 126.60430 * 0.02562 * 7 6 5 36 36 H 1.09006 * 109.58475 * 353.41055 * 12 11 9 37 37 H 1.09001 * 109.59072 * 113.69369 * 12 11 9 38 38 H 1.09000 * 109.50044 * 65.38914 * 13 12 11 39 39 H 1.09006 * 109.49967 * 185.48158 * 13 12 11 40 40 H 1.09009 * 109.34126 * 301.12440 * 14 13 12 41 41 H 1.09000 * 109.44212 * 181.23908 * 14 13 12 42 42 H 0.96991 * 120.00083 * 179.97438 * 20 19 17 43 43 H 1.09006 * 109.58844 * 246.16009 * 25 11 9 44 44 H 1.08997 * 109.58612 * 6.58848 * 25 11 9 45 45 H 1.07998 * 120.03553 * 179.74528 * 28 5 4 46 46 H 1.07997 * 119.96698 * 180.22695 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1983 0.0000 4 6 3.5781 1.2015 -0.0005 5 6 4.2737 0.0001 -0.0016 6 7 5.6760 0.0002 -0.0027 7 6 6.4816 -1.0840 -0.0098 8 6 7.7669 -0.6208 -0.0042 9 6 8.9838 -1.4544 -0.0053 10 8 8.8949 -2.6604 0.1228 11 7 10.1944 -0.8795 -0.1485 12 6 10.3113 0.5509 -0.4633 13 6 11.1927 0.7149 -1.7055 14 6 12.5304 0.0079 -1.4735 15 6 12.2901 -1.4856 -1.2417 16 1 11.7796 -1.9103 -2.1060 17 6 13.6114 -2.1829 -1.0442 18 1 14.5311 -1.6181 -1.0829 19 6 13.6461 -3.5419 -0.8141 20 7 12.5260 -4.2295 -0.7665 21 14 15.2838 -4.4065 -0.5699 22 1 15.9796 -3.8256 0.6064 23 1 15.0497 -5.8548 -0.3405 24 1 16.1241 -4.2261 -1.7810 25 6 11.4223 -1.6713 0.0070 26 7 7.7352 0.7230 -0.0033 27 7 6.5122 1.1257 -0.0024 28 6 3.5783 -1.2014 -0.0074 29 6 2.1971 -1.1983 -0.0020 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3632 -0.8901 0.5138 32 1 -0.3633 0.8898 0.5139 33 1 1.6553 2.1327 0.0004 34 1 4.1166 2.1378 -0.0010 35 1 6.1698 -2.1180 -0.0161 36 1 9.3218 0.9637 -0.6603 37 1 10.7648 1.0745 0.3782 38 1 10.6936 0.2712 -2.5670 39 1 11.3662 1.7749 -1.8912 40 1 13.0187 0.4374 -0.5986 41 1 13.1679 0.1419 -2.3475 42 1 12.5504 -5.1856 -0.6049 43 1 11.9688 -1.3293 0.8860 44 1 11.1659 -2.7246 0.1204 45 1 4.1167 -2.1376 -0.0124 46 1 1.6555 -2.1327 -0.0028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597912549.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:16 Heat of formation + Delta-G solvation = 96.946917 kcal Electronic energy + Delta-G solvation = -28635.973933 eV Core-core repulsion = 24720.984184 eV Total energy + Delta-G solvation = -3914.989749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.50722 -39.90858 -39.03128 -36.59963 -35.34774 -33.31332 -32.07860 -31.79663 -31.54005 -30.77383 -29.59588 -27.34520 -25.31735 -24.91800 -23.72744 -23.63724 -22.00533 -21.70843 -21.29735 -20.04094 -19.02039 -17.90366 -16.62432 -16.30090 -16.06132 -15.87563 -15.66616 -15.44675 -14.92191 -14.53564 -14.38670 -14.23892 -14.11191 -14.01239 -13.63120 -13.25432 -12.92548 -12.83244 -12.74263 -12.55793 -12.32018 -12.14441 -12.04476 -11.88821 -11.52776 -11.39794 -11.21294 -10.91977 -10.68274 -10.42337 -10.20444 -9.98598 -9.74777 -9.55877 -9.51377 -9.45048 -9.04035 -8.84985 -8.66576 -8.38295 -7.66642 -5.94874 -4.03522 0.16709 0.80203 1.50650 1.79586 1.81433 3.20273 3.34931 3.40654 3.42304 3.60748 3.74230 4.06702 4.19183 4.31506 4.40029 4.46236 4.48962 4.74845 4.80966 4.91376 5.01753 5.04784 5.11813 5.23856 5.34713 5.41269 5.46157 5.52604 5.71315 5.72633 5.74846 5.88881 5.98880 6.03755 6.15001 6.29123 6.42994 6.51644 6.57384 6.73706 6.78202 6.95651 7.06539 7.20910 7.35095 7.68131 7.83459 7.93308 8.04709 8.29995 8.43643 8.81742 9.00528 9.61532 11.10272 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024841 B = 0.002257 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.912454 B =12402.672526 C =13331.038887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.085 4.085 3 C -0.100 4.100 4 C -0.101 4.101 5 C 0.133 3.867 6 N -0.314 5.314 7 C 0.085 3.915 8 C -0.074 4.074 9 C 0.587 3.413 10 O -0.533 6.533 11 N -0.586 5.586 12 C 0.087 3.913 13 C -0.132 4.132 14 C -0.111 4.111 15 C 0.040 3.960 16 H 0.029 0.971 17 C -0.520 4.520 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.881 5.881 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.278 1.278 25 C 0.112 3.888 26 N -0.194 5.194 27 N -0.068 5.068 28 C -0.121 4.121 29 C -0.097 4.097 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.135 0.865 34 H 0.142 0.858 35 H 0.207 0.793 36 H 0.112 0.888 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.264 0.736 43 H 0.045 0.955 44 H 0.124 0.876 45 H 0.137 0.863 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.602 9.935 1.713 26.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.085 4.085 3 C -0.119 4.119 4 C -0.121 4.121 5 C 0.041 3.959 6 N -0.093 5.093 7 C -0.068 4.068 8 C -0.212 4.212 9 C 0.371 3.629 10 O -0.409 6.409 11 N -0.316 5.316 12 C -0.037 4.037 13 C -0.171 4.171 14 C -0.149 4.149 15 C 0.021 3.979 16 H 0.047 0.953 17 C -0.558 4.558 18 H 0.076 0.924 19 C -0.141 4.141 20 N -0.518 5.518 21 Si 0.720 3.280 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.008 4.008 26 N -0.067 5.067 27 N -0.045 5.045 28 C -0.141 4.141 29 C -0.115 4.115 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.153 0.847 34 H 0.160 0.840 35 H 0.223 0.777 36 H 0.130 0.870 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.141 0.859 45 H 0.155 0.845 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -24.574 10.615 1.828 26.831 hybrid contribution 0.909 -1.482 0.120 1.743 sum -23.665 9.132 1.948 25.441 Atomic orbital electron populations 1.20828 0.90484 1.03228 1.02747 1.20106 0.96725 0.92995 0.98712 1.20980 0.92902 0.98272 0.99713 1.20959 0.94382 0.96932 0.99848 1.17620 0.77613 0.95754 1.04874 1.47584 1.05786 1.06651 1.49280 1.23369 0.89807 0.94830 0.98763 1.21927 0.95172 0.89969 1.14095 1.16807 0.81586 0.86144 0.78376 1.90830 1.85762 1.12943 1.51406 1.48319 1.06259 1.10457 1.66613 1.22344 1.02683 0.81452 0.97220 1.21947 0.97854 0.99683 0.97596 1.21647 0.94520 0.98436 1.00285 1.18958 0.95060 0.89897 0.93948 0.95269 1.21053 0.92054 0.92692 1.50015 0.92398 1.25062 0.96338 0.97611 0.95078 1.69882 1.25615 1.07844 1.48479 0.86652 0.84159 0.78507 0.78637 1.20272 1.21301 1.20320 1.22371 0.81165 0.98302 0.98953 1.74528 1.11241 1.10758 1.10205 1.82028 0.93695 1.06130 1.22681 1.20994 0.94947 0.96315 1.01892 1.20915 0.92677 0.98348 0.99579 0.90725 0.91161 0.91189 0.84711 0.84024 0.77662 0.87047 0.92237 0.92511 0.92209 0.93212 0.93153 0.92641 0.93656 0.85851 0.84522 0.84590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.42 10.01 36.01 0.36 -0.06 16 2 C -0.08 -0.51 5.88 -104.59 -0.62 -1.13 16 3 C -0.10 -0.66 9.69 -39.61 -0.38 -1.05 16 4 C -0.10 -0.89 9.68 -39.41 -0.38 -1.28 16 5 C 0.13 1.37 6.69 -83.58 -0.56 0.81 16 6 N -0.31 -4.06 3.82 -10.42 -0.04 -4.10 16 7 C 0.08 1.17 10.61 -16.71 -0.18 1.00 16 8 C -0.07 -1.27 6.69 -83.54 -0.56 -1.83 16 9 C 0.59 12.44 7.67 -12.48 -0.10 12.35 16 10 O -0.53 -12.89 16.30 5.28 0.09 -12.80 16 11 N -0.59 -12.64 2.97 -174.00 -0.52 -13.16 16 12 C 0.09 1.59 6.08 -3.71 -0.02 1.57 16 13 C -0.13 -2.39 6.09 -26.60 -0.16 -2.55 16 14 C -0.11 -2.33 5.10 -26.67 -0.14 -2.47 16 15 C 0.04 1.03 2.26 -91.65 -0.21 0.82 16 16 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 17 C -0.52 -14.29 8.56 -34.44 -0.29 -14.59 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 20 N -0.88 -25.82 11.39 55.43 0.63 -25.19 16 21 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.11 2.79 5.41 -3.71 -0.02 2.77 16 26 N -0.19 -3.21 8.79 32.85 0.29 -2.92 16 27 N -0.07 -1.01 13.12 60.35 0.79 -0.21 16 28 C -0.12 -0.98 9.47 -39.41 -0.37 -1.35 16 29 C -0.10 -0.62 9.69 -39.61 -0.38 -1.00 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.21 8.09 -51.93 -0.42 -0.21 16 32 H 0.07 0.20 8.08 -51.93 -0.42 -0.22 16 33 H 0.14 0.58 8.06 -52.48 -0.42 0.16 16 34 H 0.14 1.24 7.73 -52.49 -0.41 0.84 16 35 H 0.21 2.23 7.13 -52.49 -0.37 1.86 16 36 H 0.11 1.93 4.12 -78.00 -0.32 1.61 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 1.02 8.14 -51.92 -0.42 0.59 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.12 3.52 5.11 -51.93 -0.27 3.25 16 45 H 0.14 0.92 6.81 -52.49 -0.36 0.56 16 46 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 LS Contribution 376.52 15.07 5.67 5.67 Total: -1.00 -32.87 376.52 -8.55 -41.41 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -6.33 Total: 1.24 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -4.11 Total: -6.37 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 1.15 Total: -45.59 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.09 Total: -12.80 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.87 -8.55 -41.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597912549.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.360 kcal (2) G-P(sol) polarization free energy of solvation -32.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds