Wall clock time and date at job start Tue Mar 31 2020 22:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38275 * 119.93219 * 2 1 4 4 C 1.38119 * 120.06633 * 180.02562 * 3 2 1 5 5 C 1.38829 * 119.93375 * 0.02562 * 4 3 2 6 6 N 1.40225 * 120.06411 * 179.97438 * 5 4 3 7 7 C 1.35080 * 126.61155 * 180.31655 * 6 5 4 8 8 C 1.36620 * 106.79144 * 180.16770 * 7 6 5 9 9 C 1.47512 * 125.76382 * 179.83695 * 8 7 6 10 10 O 1.21600 * 120.00382 * 352.66626 * 9 8 7 11 11 N 1.34780 * 120.00153 * 172.65892 * 9 8 7 12 12 C 1.46928 * 120.62829 * 352.69630 * 11 9 8 13 13 C 1.53189 * 108.89135 * 233.55424 * 12 11 9 14 14 C 1.53070 * 109.29785 * 305.58032 * 13 12 11 15 15 C 1.53039 * 109.65876 * 61.15099 * 14 13 12 16 16 H 1.08994 * 109.49631 * 58.65742 * 15 14 13 17 17 C 1.50704 * 109.49249 * 178.75316 * 15 14 13 18 18 H 1.07995 * 120.00446 * 359.83772 * 17 15 14 19 19 C 1.37879 * 119.99680 * 179.83847 * 17 15 14 20 20 N 1.31521 * 120.00038 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 120.00384 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46745 * 60.00016 * 21 19 17 23 23 H 1.48497 * 109.47534 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46892 * 300.00409 * 21 19 17 25 25 C 1.46923 * 120.63216 * 172.71159 * 11 9 8 26 26 N 1.34413 * 108.47075 * 359.57601 * 8 7 6 27 27 N 1.28749 * 109.57629 * 0.26374 * 26 8 7 28 28 C 1.38821 * 119.86940 * 0.25082 * 5 4 3 29 29 C 1.38125 * 119.93281 * 359.51816 * 28 5 4 30 30 H 1.08996 * 109.47630 * 90.00042 * 1 2 3 31 31 H 1.09004 * 109.46503 * 209.99769 * 1 2 3 32 32 H 1.08994 * 109.47281 * 329.99161 * 1 2 3 33 33 H 1.08004 * 119.96842 * 0.02705 * 3 2 1 34 34 H 1.08001 * 120.03616 * 179.97438 * 4 3 2 35 35 H 1.08001 * 126.60430 * 0.02562 * 7 6 5 36 36 H 1.09006 * 109.58475 * 353.41055 * 12 11 9 37 37 H 1.09001 * 109.59072 * 113.69369 * 12 11 9 38 38 H 1.09000 * 109.50044 * 65.38914 * 13 12 11 39 39 H 1.09006 * 109.49967 * 185.48158 * 13 12 11 40 40 H 1.09009 * 109.34126 * 301.12440 * 14 13 12 41 41 H 1.09000 * 109.44212 * 181.23908 * 14 13 12 42 42 H 0.96991 * 120.00083 * 179.97438 * 20 19 17 43 43 H 1.09006 * 109.58844 * 246.16009 * 25 11 9 44 44 H 1.08997 * 109.58612 * 6.58848 * 25 11 9 45 45 H 1.07998 * 120.03553 * 179.74528 * 28 5 4 46 46 H 1.07997 * 119.96698 * 180.22695 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1983 0.0000 4 6 3.5781 1.2015 -0.0005 5 6 4.2737 0.0001 -0.0016 6 7 5.6760 0.0002 -0.0027 7 6 6.4816 -1.0840 -0.0098 8 6 7.7669 -0.6208 -0.0042 9 6 8.9838 -1.4544 -0.0053 10 8 8.8949 -2.6604 0.1228 11 7 10.1944 -0.8795 -0.1485 12 6 10.3113 0.5509 -0.4633 13 6 11.1927 0.7149 -1.7055 14 6 12.5304 0.0079 -1.4735 15 6 12.2901 -1.4856 -1.2417 16 1 11.7796 -1.9103 -2.1060 17 6 13.6114 -2.1829 -1.0442 18 1 14.5311 -1.6181 -1.0829 19 6 13.6461 -3.5419 -0.8141 20 7 12.5260 -4.2295 -0.7665 21 14 15.2838 -4.4065 -0.5699 22 1 15.9796 -3.8256 0.6064 23 1 15.0497 -5.8548 -0.3405 24 1 16.1241 -4.2261 -1.7810 25 6 11.4223 -1.6713 0.0070 26 7 7.7352 0.7230 -0.0033 27 7 6.5122 1.1257 -0.0024 28 6 3.5783 -1.2014 -0.0074 29 6 2.1971 -1.1983 -0.0020 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3632 -0.8901 0.5138 32 1 -0.3633 0.8898 0.5139 33 1 1.6553 2.1327 0.0004 34 1 4.1166 2.1378 -0.0010 35 1 6.1698 -2.1180 -0.0161 36 1 9.3218 0.9637 -0.6603 37 1 10.7648 1.0745 0.3782 38 1 10.6936 0.2712 -2.5670 39 1 11.3662 1.7749 -1.8912 40 1 13.0187 0.4374 -0.5986 41 1 13.1679 0.1419 -2.3475 42 1 12.5504 -5.1856 -0.6049 43 1 11.9688 -1.3293 0.8860 44 1 11.1659 -2.7246 0.1204 45 1 4.1167 -2.1376 -0.0124 46 1 1.6555 -2.1327 -0.0028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597912549.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:15 Heat of formation + Delta-G solvation = 78.125402 kcal Electronic energy + Delta-G solvation = -28636.790095 eV Core-core repulsion = 24720.984184 eV Total energy + Delta-G solvation = -3915.805911 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.65132 -40.91253 -40.32807 -38.35413 -36.25677 -35.22937 -33.51577 -32.83495 -32.35297 -31.91389 -31.32004 -28.08555 -27.06327 -26.61125 -24.71454 -24.57991 -23.41131 -23.13035 -22.12524 -21.46841 -20.41869 -19.26361 -18.40654 -17.67008 -17.36691 -17.13605 -16.60012 -16.44272 -16.27051 -15.97346 -15.90774 -15.26410 -15.09259 -14.82148 -14.70431 -14.62202 -14.51362 -14.33641 -13.92567 -13.60914 -13.54972 -13.49916 -13.10891 -12.92367 -12.83341 -12.62612 -12.45782 -12.26928 -12.15482 -12.06530 -12.02394 -11.68587 -11.45014 -11.26228 -10.96240 -10.69080 -10.67799 -10.49793 -10.11824 -9.48619 -9.35488 -8.08314 -6.25601 -0.68344 0.24911 0.44622 0.67102 0.80969 1.42819 1.44700 1.52845 2.04469 2.17881 2.44277 2.61761 2.97149 3.15262 3.20226 3.58493 3.70586 3.82108 3.90346 3.93402 4.06011 4.19023 4.25930 4.29424 4.37059 4.44114 4.49651 4.62437 4.76230 4.78136 4.85642 4.89490 4.98768 5.02484 5.06417 5.09301 5.23280 5.25893 5.27721 5.31174 5.35348 5.45629 5.54149 5.56228 5.63690 5.87283 5.89519 5.98795 6.33482 6.50694 6.70902 6.85811 7.15519 7.43898 8.95282 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024841 B = 0.002257 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.912454 B =12402.672526 C =13331.038887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.075 4.075 3 C -0.102 4.102 4 C -0.108 4.108 5 C 0.092 3.908 6 N -0.297 5.297 7 C 0.101 3.899 8 C -0.100 4.100 9 C 0.585 3.415 10 O -0.575 6.575 11 N -0.594 5.594 12 C 0.086 3.914 13 C -0.125 4.125 14 C -0.105 4.105 15 C 0.039 3.961 16 H -0.013 1.013 17 C -0.536 4.536 18 H 0.062 0.938 19 C 0.009 3.991 20 N -0.914 5.914 21 Si 0.960 3.040 22 H -0.268 1.268 23 H -0.287 1.287 24 H -0.269 1.269 25 C 0.125 3.875 26 N -0.206 5.206 27 N -0.073 5.073 28 C -0.121 4.121 29 C -0.099 4.099 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.159 0.841 34 H 0.137 0.863 35 H 0.232 0.768 36 H 0.127 0.873 37 H 0.072 0.928 38 H 0.045 0.955 39 H 0.100 0.900 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.261 0.739 43 H 0.041 0.959 44 H 0.084 0.916 45 H 0.147 0.853 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.835 11.305 1.814 29.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.076 4.076 3 C -0.120 4.120 4 C -0.128 4.128 5 C 0.001 3.999 6 N -0.075 5.075 7 C -0.053 4.053 8 C -0.238 4.238 9 C 0.371 3.629 10 O -0.454 6.454 11 N -0.324 5.324 12 C -0.036 4.036 13 C -0.163 4.163 14 C -0.142 4.142 15 C 0.020 3.980 16 H 0.006 0.994 17 C -0.575 4.575 18 H 0.081 0.919 19 C -0.190 4.190 20 N -0.552 5.552 21 Si 0.785 3.215 22 H -0.193 1.193 23 H -0.213 1.213 24 H -0.194 1.194 25 C 0.003 3.997 26 N -0.079 5.079 27 N -0.051 5.051 28 C -0.142 4.142 29 C -0.117 4.117 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.177 0.823 34 H 0.154 0.846 35 H 0.249 0.751 36 H 0.144 0.856 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.118 0.882 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.103 0.897 45 H 0.165 0.835 46 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -26.834 12.050 1.921 29.478 hybrid contribution 1.314 -1.879 0.082 2.294 sum -25.520 10.171 2.003 27.545 Atomic orbital electron populations 1.20917 0.88380 1.04367 1.03662 1.20518 0.98253 0.92584 0.96246 1.21286 0.92002 0.99769 0.98972 1.21085 0.95439 0.96299 0.99986 1.18013 0.76094 0.97326 1.08440 1.47687 1.06830 1.05660 1.47320 1.23650 0.88779 0.96034 0.96801 1.21340 0.94554 0.90259 1.17697 1.17236 0.82493 0.86065 0.77118 1.90789 1.86559 1.14879 1.53205 1.48327 1.05530 1.11625 1.66874 1.22571 1.03844 0.79443 0.97778 1.21914 0.95785 1.01591 0.96994 1.21535 0.96479 0.95443 1.00767 1.18895 0.93994 0.92762 0.92378 0.99437 1.21454 0.93061 0.93283 1.49664 0.91935 1.25912 0.99802 0.98499 0.94794 1.70075 1.27879 1.07796 1.49486 0.85584 0.79836 0.77103 0.78973 1.19266 1.21305 1.19422 1.21842 0.82567 0.96752 0.98490 1.74392 1.12230 1.10302 1.10980 1.81936 0.93340 1.06862 1.22949 1.21245 0.95834 0.95966 1.01141 1.21282 0.92014 0.99758 0.98682 0.89740 0.90063 0.90139 0.82330 0.84562 0.75145 0.85616 0.90952 0.93568 0.88165 0.92390 0.92756 0.92995 0.94086 0.89732 0.83489 0.82023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.40 10.01 71.24 0.71 0.31 16 2 C -0.08 -0.67 5.88 -19.85 -0.12 -0.79 16 3 C -0.10 -1.09 9.69 22.25 0.22 -0.87 16 4 C -0.11 -1.76 9.68 22.38 0.22 -1.55 16 5 C 0.09 1.77 6.69 38.08 0.25 2.02 16 6 N -0.30 -7.49 3.82 -186.89 -0.71 -8.20 16 7 C 0.10 2.79 10.61 83.81 0.89 3.68 16 8 C -0.10 -3.52 6.69 40.82 0.27 -3.25 16 9 C 0.58 25.88 7.67 86.69 0.67 26.55 16 10 O -0.57 -29.42 16.30 -4.03 -0.07 -29.48 16 11 N -0.59 -26.56 2.97 -822.66 -2.45 -29.01 16 12 C 0.09 3.12 6.08 86.36 0.52 3.65 16 13 C -0.12 -4.38 6.09 30.68 0.19 -4.20 16 14 C -0.10 -4.38 5.10 30.63 0.16 -4.22 16 15 C 0.04 2.06 2.26 -11.46 -0.03 2.03 16 16 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 17 C -0.54 -30.26 8.56 25.60 0.22 -30.04 16 18 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 19 C 0.01 0.54 5.30 84.65 0.45 0.99 16 20 N -0.91 -56.02 11.39 21.45 0.24 -55.77 16 21 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 25 C 0.13 6.56 5.41 86.36 0.47 7.02 16 26 N -0.21 -6.81 8.79 -49.98 -0.44 -7.25 16 27 N -0.07 -2.14 13.12 37.02 0.49 -1.66 16 28 C -0.12 -1.73 9.47 22.38 0.21 -1.52 16 29 C -0.10 -0.97 9.69 22.25 0.22 -0.76 16 30 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.08 0.15 8.09 -2.38 -0.02 0.13 16 32 H 0.08 0.15 8.08 -2.39 -0.02 0.13 16 33 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 34 H 0.14 2.29 7.73 -2.91 -0.02 2.27 16 35 H 0.23 4.88 7.13 -2.91 -0.02 4.86 16 36 H 0.13 4.30 4.12 -36.13 -0.15 4.15 16 37 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.10 2.76 8.14 -2.38 -0.02 2.74 16 40 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 41 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 43 H 0.04 2.12 8.14 -2.38 -0.02 2.10 16 44 H 0.08 5.14 5.11 -2.39 -0.01 5.13 16 45 H 0.15 1.70 6.81 -2.91 -0.02 1.68 16 46 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 Total: -1.00 -75.57 376.52 5.47 -70.10 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.86 Total: 15.37 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 5.52 Total: -0.93 kcal Atomic # 7 Polarization: -99.02 SS G_CDS: -2.87 Total: -101.89 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.07 Total: -29.48 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -75.57 5.47 -70.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597912549.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.227 kcal (2) G-P(sol) polarization free energy of solvation -75.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds