Wall clock time and date at job start Tue Mar 31 2020 23:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38015 * 126.31197 * 2 1 4 4 C 1.47423 * 126.41069 * 359.97438 * 3 2 1 5 5 O 1.21609 * 119.99387 * 42.93759 * 4 3 2 6 6 N 1.34772 * 119.99970 * 222.93779 * 4 3 2 7 7 C 1.46492 * 120.00363 * 5.44135 * 6 4 3 8 8 C 1.50700 * 109.47152 * 264.30997 * 7 6 4 9 9 H 1.07997 * 120.00231 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99828 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00447 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99763 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47203 * 60.00266 * 12 10 8 14 14 H 1.48497 * 109.47016 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47033 * 300.00393 * 12 10 8 16 16 C 1.46504 * 119.99551 * 185.44184 * 6 4 3 17 17 C 1.52996 * 109.47270 * 271.93926 * 16 6 4 18 18 C 1.53002 * 117.50274 * 243.74887 * 17 16 6 19 19 C 1.52998 * 117.50109 * 175.08954 * 17 16 6 20 20 C 1.41371 * 107.18269 * 179.73779 * 3 2 1 21 21 N 1.30446 * 108.08269 * 0.25679 * 20 3 2 22 22 N 1.34627 * 126.31535 * 180.18669 * 2 1 3 23 23 C 1.39803 * 125.77639 * 359.96425 * 22 2 1 24 24 C 1.38948 * 119.68501 * 155.05071 * 23 22 2 25 25 C 1.38428 * 119.10298 * 179.79081 * 24 23 22 26 26 C 1.38799 * 118.48327 * 0.48193 * 25 24 23 27 27 C 1.38132 * 119.28897 * 359.74317 * 26 25 24 28 28 N 1.31884 * 120.84681 * 0.02830 * 27 26 25 29 29 H 1.08998 * 109.47364 * 89.99692 * 1 2 3 30 30 H 1.08998 * 109.47184 * 210.00575 * 1 2 3 31 31 H 1.09006 * 109.46926 * 330.00144 * 1 2 3 32 32 H 1.09006 * 109.47313 * 24.30965 * 7 6 4 33 33 H 1.08996 * 109.47469 * 144.30913 * 7 6 4 34 34 H 0.96998 * 120.00107 * 179.97438 * 11 10 8 35 35 H 1.09003 * 109.46749 * 151.94129 * 16 6 4 36 36 H 1.09002 * 109.47380 * 31.94568 * 16 6 4 37 37 H 1.08998 * 115.54770 * 29.42213 * 17 16 6 38 38 H 1.08997 * 117.49161 * 0.02562 * 18 17 16 39 39 H 1.09000 * 117.49581 * 145.01786 * 18 17 16 40 40 H 1.09002 * 117.49971 * 214.98305 * 19 17 16 41 41 H 1.09008 * 117.49574 * 359.97438 * 19 17 16 42 42 H 1.08000 * 125.95777 * 180.28331 * 20 3 2 43 43 H 1.07995 * 120.44869 * 0.02826 * 24 23 22 44 44 H 1.07999 * 120.76159 * 180.22354 * 25 24 23 45 45 H 1.07996 * 120.35331 * 179.72535 * 26 25 24 46 46 H 1.08008 * 119.57306 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3243 1.1121 0.0000 4 6 1.8865 2.5198 -0.0005 5 8 0.9694 2.8715 0.7165 6 7 2.5025 3.4169 -0.7956 7 6 3.5256 2.9729 -1.7455 8 6 4.8904 3.1423 -1.1294 9 1 4.9862 3.5404 -0.1301 10 6 6.0169 2.7880 -1.8413 11 7 5.9003 2.3027 -3.0580 12 14 7.7087 2.9973 -1.0773 13 1 7.7965 2.1834 0.1617 14 1 8.7457 2.5473 -2.0402 15 1 7.9287 4.4281 -0.7462 16 6 2.1491 4.8360 -0.7099 17 6 0.9773 5.1274 -1.6496 18 6 1.2276 6.0875 -2.8143 19 6 0.3817 6.5364 -1.6202 20 6 3.6599 0.6489 0.0062 21 7 3.6361 -0.6554 0.0041 22 7 2.3043 -1.0848 -0.0035 23 6 1.8744 -2.4151 -0.0072 24 6 2.7040 -3.4049 -0.5196 25 6 2.2680 -4.7187 -0.5133 26 6 1.0079 -4.9955 -0.0014 27 6 0.2348 -3.9604 0.4874 28 7 0.6792 -2.7189 0.4722 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 3.3645 1.9225 -1.9885 33 1 3.4608 3.5702 -2.6549 34 1 6.6928 2.0538 -3.5588 35 1 3.0071 5.4423 -1.0003 36 1 1.8629 5.0781 0.3137 37 1 0.2940 4.2957 -1.8209 38 1 2.2272 6.5111 -2.9113 39 1 0.7087 5.8874 -3.7518 40 1 -0.6934 6.6316 -1.7725 41 1 0.8244 7.2557 -0.9310 42 1 4.5455 1.2670 0.0121 43 1 3.6774 -3.1532 -0.9140 44 1 2.8924 -5.5098 -0.9016 45 1 0.6358 -6.0092 0.0141 46 1 -0.7467 -4.1706 0.8863 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609142647.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:26 Heat of formation + Delta-G solvation = 115.862803 kcal Electronic energy + Delta-G solvation = -29516.343350 eV Core-core repulsion = 25602.173856 eV Total energy + Delta-G solvation = -3914.169494 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.44950 -39.96058 -38.69371 -36.79385 -34.72793 -33.59186 -32.66065 -32.50254 -31.70922 -29.60226 -27.92817 -27.21367 -25.78145 -23.94475 -23.82430 -22.92276 -22.03828 -21.41821 -20.66545 -20.08072 -18.17053 -17.49624 -16.59052 -16.57795 -16.28828 -15.80571 -15.58943 -15.25115 -14.80009 -14.57033 -14.51549 -14.10305 -13.83506 -13.65643 -13.38752 -13.26881 -12.67155 -12.62330 -12.45728 -12.28976 -12.19880 -11.90225 -11.66575 -11.37005 -11.24107 -11.15796 -10.98880 -10.77575 -10.54494 -10.29251 -10.21644 -10.09400 -9.96153 -9.74280 -9.60559 -9.47494 -9.06672 -8.61409 -8.58804 -7.98898 -7.66426 -6.20684 -4.29238 0.65488 1.02384 2.13344 2.37379 2.88959 3.23566 3.29293 3.31738 3.62179 3.77581 4.02121 4.21933 4.26510 4.36172 4.55516 4.71604 4.84492 4.92595 5.08576 5.12051 5.16385 5.27471 5.33630 5.42804 5.53740 5.55590 5.73579 5.83574 5.85537 5.88175 5.89976 5.97109 6.12268 6.19493 6.22165 6.28346 6.32003 6.35028 6.40718 6.49652 6.64917 6.85248 7.09578 7.26731 7.32424 7.56895 7.60996 7.73559 8.04839 8.10790 8.39481 8.78338 9.08152 9.37865 10.84764 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009447 B = 0.004075 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.065736 B = 6869.830468 C = 9180.407012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.153 3.847 3 C -0.265 4.265 4 C 0.594 3.406 5 O -0.570 6.570 6 N -0.586 5.586 7 C 0.238 3.762 8 C -0.546 4.546 9 H 0.064 0.936 10 C 0.071 3.929 11 N -0.881 5.881 12 Si 0.891 3.109 13 H -0.272 1.272 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.154 3.846 17 C -0.154 4.154 18 C -0.180 4.180 19 C -0.181 4.181 20 C 0.131 3.869 21 N -0.304 5.304 22 N -0.331 5.331 23 C 0.380 3.620 24 C -0.161 4.161 25 C -0.054 4.054 26 C -0.192 4.192 27 C 0.127 3.873 28 N -0.504 5.504 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.041 0.959 33 H 0.035 0.965 34 H 0.267 0.733 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.223 0.777 43 H 0.148 0.852 44 H 0.142 0.858 45 H 0.139 0.861 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.593 -8.894 2.341 13.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.027 3.973 3 C -0.279 4.279 4 C 0.382 3.618 5 O -0.452 6.452 6 N -0.315 5.315 7 C 0.118 3.882 8 C -0.584 4.584 9 H 0.083 0.917 10 C -0.134 4.134 11 N -0.518 5.518 12 Si 0.718 3.282 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.200 1.200 16 C 0.031 3.969 17 C -0.173 4.173 18 C -0.217 4.217 19 C -0.219 4.219 20 C -0.058 4.058 21 N -0.120 5.120 22 N -0.107 5.107 23 C 0.153 3.847 24 C -0.183 4.183 25 C -0.080 4.080 26 C -0.213 4.213 27 C -0.031 4.031 28 N -0.217 5.217 29 H 0.090 0.910 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.239 0.761 43 H 0.166 0.834 44 H 0.160 0.840 45 H 0.157 0.843 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -9.763 -9.230 2.837 13.732 hybrid contribution 1.282 0.148 -0.268 1.318 sum -8.481 -9.082 2.569 12.689 Atomic orbital electron populations 1.20822 0.86450 1.05941 1.03282 1.21521 0.94782 0.85505 0.95499 1.20114 0.93223 0.93720 1.20835 1.17194 0.81268 0.83978 0.79317 1.90660 1.30617 1.80464 1.43432 1.48012 1.39249 1.05973 1.38277 1.19469 0.84653 0.96480 0.87623 1.21483 0.90773 1.44234 1.01925 0.91748 1.24948 0.99186 0.94585 0.94698 1.69914 1.30218 1.41434 1.10236 0.86662 0.83426 0.78854 0.79270 1.19771 1.21126 1.20036 1.20829 0.95116 0.82475 0.98497 1.22752 1.00945 0.93217 1.00413 1.23027 1.01256 1.04348 0.93024 1.22890 0.98996 0.98090 1.01876 1.25361 0.98987 0.90679 0.90755 1.77372 0.92658 1.14217 1.27800 1.45447 1.05662 1.02208 1.57369 1.17766 0.90322 0.82447 0.94122 1.21760 1.02243 0.92456 1.01842 1.21524 0.95509 0.95863 0.95142 1.22114 0.95728 1.01087 1.02366 1.22556 0.99508 0.86108 0.94896 1.67007 1.14283 1.22976 1.17409 0.90957 0.88192 0.88548 0.94140 0.94646 0.92354 0.90003 0.90771 0.88160 0.88592 0.89418 0.89358 0.88973 0.76134 0.83371 0.84022 0.84311 0.81859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 9.76 36.01 0.35 -1.38 16 2 C 0.15 2.97 6.94 -81.45 -0.57 2.40 16 3 C -0.27 -5.66 4.95 -105.05 -0.52 -6.18 16 4 C 0.59 13.02 7.37 -12.52 -0.09 12.92 16 5 O -0.57 -13.06 15.47 5.27 0.08 -12.98 16 6 N -0.59 -12.47 2.46 -176.33 -0.43 -12.90 16 7 C 0.24 5.59 4.67 -5.20 -0.02 5.57 16 8 C -0.55 -13.42 6.68 -34.44 -0.23 -13.65 16 9 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 10 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 11 N -0.88 -23.58 13.29 55.43 0.74 -22.85 16 12 Si 0.89 19.82 29.54 -169.99 -5.02 14.80 16 13 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 14 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 16 C 0.15 2.88 5.64 -4.04 -0.02 2.85 16 17 C -0.15 -2.55 6.00 -90.62 -0.54 -3.09 16 18 C -0.18 -2.61 10.18 -26.69 -0.27 -2.88 16 19 C -0.18 -2.45 10.25 -26.70 -0.27 -2.73 16 20 C 0.13 2.85 9.93 -16.95 -0.17 2.68 16 21 N -0.30 -6.34 12.01 30.88 0.37 -5.97 16 22 N -0.33 -6.31 3.73 -8.02 -0.03 -6.34 16 23 C 0.38 6.11 7.34 -154.38 -1.13 4.97 16 24 C -0.16 -2.18 9.73 -39.25 -0.38 -2.56 16 25 C -0.05 -0.52 10.17 -39.30 -0.40 -0.92 16 26 C -0.19 -1.61 10.11 -39.41 -0.40 -2.00 16 27 C 0.13 1.26 11.18 -17.57 -0.20 1.07 16 28 N -0.50 -7.07 7.57 -12.29 -0.09 -7.16 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.10 1.49 5.81 -51.93 -0.30 1.19 16 31 H 0.10 1.64 6.83 -51.93 -0.35 1.29 16 32 H 0.04 1.03 6.02 -51.93 -0.31 0.71 16 33 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 34 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.08 1.50 7.79 -51.93 -0.40 1.10 16 36 H 0.07 1.38 7.56 -51.93 -0.39 0.99 16 37 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 38 H 0.10 1.40 8.03 -51.93 -0.42 0.98 16 39 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.09 1.16 8.14 -51.92 -0.42 0.74 16 42 H 0.22 5.03 5.38 -52.49 -0.28 4.75 16 43 H 0.15 2.08 7.90 -52.49 -0.41 1.67 16 44 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 45 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 46 H 0.16 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 386.19 15.07 5.82 5.82 Total: -1.00 -29.90 386.19 -9.77 -39.67 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -6.23 Total: 9.17 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -4.97 Total: -1.25 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.55 Total: -55.22 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.08 Total: -12.98 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.90 -9.77 -39.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609142647.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.530 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds