Wall clock time and date at job start Tue Mar 31 2020 23:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38015 * 126.31197 * 2 1 4 4 C 1.47423 * 126.41069 * 359.97438 * 3 2 1 5 5 O 1.21609 * 119.99387 * 42.93759 * 4 3 2 6 6 N 1.34772 * 119.99970 * 222.93779 * 4 3 2 7 7 C 1.46492 * 120.00363 * 5.44135 * 6 4 3 8 8 C 1.50700 * 109.47152 * 264.30997 * 7 6 4 9 9 H 1.07997 * 120.00231 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99828 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00447 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99763 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47203 * 60.00266 * 12 10 8 14 14 H 1.48497 * 109.47016 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47033 * 300.00393 * 12 10 8 16 16 C 1.46504 * 119.99551 * 185.44184 * 6 4 3 17 17 C 1.52996 * 109.47270 * 271.93926 * 16 6 4 18 18 C 1.53002 * 117.50274 * 243.74887 * 17 16 6 19 19 C 1.52998 * 117.50109 * 175.08954 * 17 16 6 20 20 C 1.41371 * 107.18269 * 179.73779 * 3 2 1 21 21 N 1.30446 * 108.08269 * 0.25679 * 20 3 2 22 22 N 1.34627 * 126.31535 * 180.18669 * 2 1 3 23 23 C 1.39803 * 125.77639 * 359.96425 * 22 2 1 24 24 C 1.38948 * 119.68501 * 155.05071 * 23 22 2 25 25 C 1.38428 * 119.10298 * 179.79081 * 24 23 22 26 26 C 1.38799 * 118.48327 * 0.48193 * 25 24 23 27 27 C 1.38132 * 119.28897 * 359.74317 * 26 25 24 28 28 N 1.31884 * 120.84681 * 0.02830 * 27 26 25 29 29 H 1.08998 * 109.47364 * 89.99692 * 1 2 3 30 30 H 1.08998 * 109.47184 * 210.00575 * 1 2 3 31 31 H 1.09006 * 109.46926 * 330.00144 * 1 2 3 32 32 H 1.09006 * 109.47313 * 24.30965 * 7 6 4 33 33 H 1.08996 * 109.47469 * 144.30913 * 7 6 4 34 34 H 0.96998 * 120.00107 * 179.97438 * 11 10 8 35 35 H 1.09003 * 109.46749 * 151.94129 * 16 6 4 36 36 H 1.09002 * 109.47380 * 31.94568 * 16 6 4 37 37 H 1.08998 * 115.54770 * 29.42213 * 17 16 6 38 38 H 1.08997 * 117.49161 * 0.02562 * 18 17 16 39 39 H 1.09000 * 117.49581 * 145.01786 * 18 17 16 40 40 H 1.09002 * 117.49971 * 214.98305 * 19 17 16 41 41 H 1.09008 * 117.49574 * 359.97438 * 19 17 16 42 42 H 1.08000 * 125.95777 * 180.28331 * 20 3 2 43 43 H 1.07995 * 120.44869 * 0.02826 * 24 23 22 44 44 H 1.07999 * 120.76159 * 180.22354 * 25 24 23 45 45 H 1.07996 * 120.35331 * 179.72535 * 26 25 24 46 46 H 1.08008 * 119.57306 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3243 1.1121 0.0000 4 6 1.8865 2.5198 -0.0005 5 8 0.9694 2.8715 0.7165 6 7 2.5025 3.4169 -0.7956 7 6 3.5256 2.9729 -1.7455 8 6 4.8904 3.1423 -1.1294 9 1 4.9862 3.5404 -0.1301 10 6 6.0169 2.7880 -1.8413 11 7 5.9003 2.3027 -3.0580 12 14 7.7087 2.9973 -1.0773 13 1 7.7965 2.1834 0.1617 14 1 8.7457 2.5473 -2.0402 15 1 7.9287 4.4281 -0.7462 16 6 2.1491 4.8360 -0.7099 17 6 0.9773 5.1274 -1.6496 18 6 1.2276 6.0875 -2.8143 19 6 0.3817 6.5364 -1.6202 20 6 3.6599 0.6489 0.0062 21 7 3.6361 -0.6554 0.0041 22 7 2.3043 -1.0848 -0.0035 23 6 1.8744 -2.4151 -0.0072 24 6 2.7040 -3.4049 -0.5196 25 6 2.2680 -4.7187 -0.5133 26 6 1.0079 -4.9955 -0.0014 27 6 0.2348 -3.9604 0.4874 28 7 0.6792 -2.7189 0.4722 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 3.3645 1.9225 -1.9885 33 1 3.4608 3.5702 -2.6549 34 1 6.6928 2.0538 -3.5588 35 1 3.0071 5.4423 -1.0003 36 1 1.8629 5.0781 0.3137 37 1 0.2940 4.2957 -1.8209 38 1 2.2272 6.5111 -2.9113 39 1 0.7087 5.8874 -3.7518 40 1 -0.6934 6.6316 -1.7725 41 1 0.8244 7.2557 -0.9310 42 1 4.5455 1.2670 0.0121 43 1 3.6774 -3.1532 -0.9140 44 1 2.8924 -5.5098 -0.9016 45 1 0.6358 -6.0092 0.0141 46 1 -0.7467 -4.1706 0.8863 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609142647.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:25 Heat of formation + Delta-G solvation = 101.154969 kcal Electronic energy + Delta-G solvation = -29516.981130 eV Core-core repulsion = 25602.173856 eV Total energy + Delta-G solvation = -3914.807274 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.86440 -41.07373 -40.26086 -38.15664 -36.46315 -34.81331 -34.41675 -33.70634 -33.03530 -30.81492 -29.60896 -28.81212 -27.33139 -25.20854 -24.83661 -24.64827 -23.17918 -22.91555 -21.96966 -21.42320 -19.78326 -18.89224 -18.48290 -17.62525 -17.51580 -17.39109 -16.82588 -16.52601 -16.32334 -16.14172 -15.92204 -15.40656 -15.16427 -14.95437 -14.65168 -14.36749 -14.36284 -14.15773 -13.90907 -13.75133 -13.44580 -13.30801 -13.16470 -12.88057 -12.83266 -12.59755 -12.55876 -12.30919 -12.18634 -12.00555 -11.72378 -11.37076 -11.31199 -10.98861 -10.83942 -10.74994 -10.57420 -10.54277 -9.98243 -9.48531 -9.31049 -8.18049 -6.32441 -0.41974 0.17900 0.78603 1.07226 1.23416 1.44666 1.46273 1.52764 2.11411 2.33167 2.50242 2.70523 2.99533 3.11160 3.24380 3.42975 3.70854 3.83161 3.93163 3.98982 4.02379 4.04799 4.11949 4.16370 4.27859 4.37610 4.44161 4.55231 4.57295 4.69361 4.76639 4.80194 4.86361 4.95674 4.97710 4.99955 5.04661 5.07399 5.16410 5.25857 5.29784 5.30573 5.44864 5.50584 5.69782 5.88686 6.02696 6.08095 6.33146 6.57645 6.82392 6.84313 7.30861 7.42335 8.87020 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009447 B = 0.004075 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.065736 B = 6869.830468 C = 9180.407012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.155 3.845 3 C -0.298 4.298 4 C 0.594 3.406 5 O -0.585 6.585 6 N -0.587 5.587 7 C 0.260 3.740 8 C -0.543 4.543 9 H 0.061 0.939 10 C 0.032 3.968 11 N -0.913 5.913 12 Si 0.948 3.052 13 H -0.270 1.270 14 H -0.285 1.285 15 H -0.269 1.269 16 C 0.154 3.846 17 C -0.179 4.179 18 C -0.176 4.176 19 C -0.154 4.154 20 C 0.116 3.884 21 N -0.317 5.317 22 N -0.325 5.325 23 C 0.329 3.671 24 C -0.175 4.175 25 C -0.048 4.048 26 C -0.163 4.163 27 C 0.122 3.878 28 N -0.521 5.521 29 H 0.084 0.916 30 H 0.116 0.884 31 H 0.087 0.913 32 H 0.019 0.981 33 H 0.018 0.982 34 H 0.267 0.733 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.206 0.794 43 H 0.131 0.869 44 H 0.177 0.823 45 H 0.187 0.813 46 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.128 -10.968 2.742 15.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.027 3.973 3 C -0.311 4.311 4 C 0.383 3.617 5 O -0.468 6.468 6 N -0.316 5.316 7 C 0.139 3.861 8 C -0.582 4.582 9 H 0.079 0.921 10 C -0.170 4.170 11 N -0.552 5.552 12 Si 0.773 3.227 13 H -0.195 1.195 14 H -0.210 1.210 15 H -0.193 1.193 16 C 0.031 3.969 17 C -0.199 4.199 18 C -0.212 4.212 19 C -0.191 4.191 20 C -0.072 4.072 21 N -0.135 5.135 22 N -0.100 5.100 23 C 0.105 3.895 24 C -0.197 4.197 25 C -0.074 4.074 26 C -0.182 4.182 27 C -0.036 4.036 28 N -0.235 5.235 29 H 0.103 0.897 30 H 0.134 0.866 31 H 0.105 0.895 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.222 0.778 43 H 0.149 0.851 44 H 0.194 0.806 45 H 0.205 0.795 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -11.294 -11.307 3.244 16.308 hybrid contribution 1.617 0.506 -0.370 1.734 sum -9.678 -10.802 2.874 14.785 Atomic orbital electron populations 1.20833 0.84247 1.06177 1.04104 1.21972 0.96085 0.85194 0.94077 1.20165 0.93496 0.94052 1.23435 1.17296 0.81020 0.84339 0.79026 1.90624 1.31281 1.80831 1.44044 1.47993 1.38727 1.07152 1.37706 1.19030 0.85011 0.94785 0.87317 1.21578 0.91343 1.43630 1.01608 0.92100 1.25578 1.02269 0.94236 0.94935 1.70017 1.31004 1.42652 1.11479 0.85760 0.79538 0.78961 0.78450 1.19506 1.21002 1.19346 1.20929 0.96010 0.80875 0.99044 1.22553 1.00722 0.94562 1.02047 1.23083 1.01712 1.03080 0.93374 1.23010 1.00012 0.95394 1.00734 1.25003 0.98758 0.91102 0.92373 1.77220 0.94515 1.13693 1.28036 1.45605 1.04665 1.03682 1.56095 1.18044 0.92288 0.81332 0.97825 1.21835 1.01525 0.93984 1.02380 1.21977 0.96584 0.94666 0.94204 1.22678 0.94187 1.02842 0.98531 1.23376 1.01098 0.85006 0.94126 1.66932 1.13415 1.25380 1.17728 0.89706 0.86566 0.89460 0.96329 0.96400 0.92393 0.90121 0.91034 0.89843 0.88767 0.88364 0.87469 0.87659 0.77822 0.85115 0.80558 0.79530 0.78018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.13 9.76 71.24 0.70 -2.44 16 2 C 0.15 6.27 6.94 42.08 0.29 6.56 16 3 C -0.30 -13.47 4.95 -20.14 -0.10 -13.57 16 4 C 0.59 27.39 7.37 86.66 0.64 28.03 16 5 O -0.58 -27.80 15.47 -4.06 -0.06 -27.86 16 6 N -0.59 -26.31 2.46 -830.05 -2.04 -28.35 16 7 C 0.26 12.91 4.67 85.63 0.40 13.31 16 8 C -0.54 -27.86 6.68 25.60 0.17 -27.69 16 9 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 10 C 0.03 1.64 5.46 84.66 0.46 2.10 16 11 N -0.91 -50.54 13.29 21.45 0.28 -50.26 16 12 Si 0.95 41.50 29.54 68.60 2.03 43.53 16 13 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 14 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 15 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 16 C 0.15 5.93 5.64 86.38 0.49 6.42 16 17 C -0.18 -6.02 6.00 -10.79 -0.06 -6.08 16 18 C -0.18 -4.99 10.18 30.62 0.31 -4.68 16 19 C -0.15 -3.94 10.25 30.62 0.31 -3.62 16 20 C 0.12 5.38 9.93 85.67 0.85 6.23 16 21 N -0.32 -14.02 12.01 -56.22 -0.67 -14.69 16 22 N -0.32 -12.87 3.73 -179.29 -0.67 -13.54 16 23 C 0.33 10.55 7.34 132.77 0.97 11.52 16 24 C -0.17 -4.65 9.73 22.49 0.22 -4.43 16 25 C -0.05 -0.77 10.17 22.45 0.23 -0.54 16 26 C -0.16 -1.89 10.11 22.38 0.23 -1.66 16 27 C 0.12 1.94 11.18 84.66 0.95 2.89 16 28 N -0.52 -13.78 7.57 -192.80 -1.46 -15.24 16 29 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.12 3.39 5.81 -2.39 -0.01 3.38 16 31 H 0.09 3.03 6.83 -2.38 -0.02 3.01 16 32 H 0.02 1.02 6.02 -2.38 -0.01 1.00 16 33 H 0.02 0.94 8.11 -2.39 -0.02 0.93 16 34 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 35 H 0.08 3.06 7.79 -2.39 -0.02 3.04 16 36 H 0.07 2.75 7.56 -2.39 -0.02 2.73 16 37 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 38 H 0.09 2.71 8.03 -2.39 -0.02 2.69 16 39 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.11 2.43 8.14 -2.38 -0.02 2.41 16 42 H 0.21 10.03 5.38 -2.91 -0.02 10.01 16 43 H 0.13 3.84 7.90 -2.91 -0.02 3.81 16 44 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 45 H 0.19 0.49 8.06 -2.91 -0.02 0.46 16 46 H 0.20 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -69.37 386.19 5.46 -63.91 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: 1.00 Total: 30.16 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 7.05 Total: 12.35 kcal Atomic # 7 Polarization: -117.52 SS G_CDS: -4.56 Total: -122.08 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.06 Total: -27.86 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -69.37 5.46 -63.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609142647.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.064 kcal (2) G-P(sol) polarization free energy of solvation -69.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds