Wall clock time and date at job start Tue Mar 31 2020 23:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 110.58512 * 2 1 4 4 C 1.53670 * 110.66149 * 236.83145 * 2 1 3 5 5 N 1.44589 * 111.23715 * 241.31680 * 4 2 1 6 6 C 1.28453 * 119.84924 * 0.49709 * 5 4 2 7 7 N 1.37570 * 125.01108 * 179.77347 * 6 5 4 8 8 C 1.47079 * 120.88621 * 359.70483 * 7 6 5 9 9 C 1.53235 * 108.52223 * 231.20421 * 8 7 6 10 10 N 1.46904 * 109.34080 * 306.16626 * 9 8 7 11 11 C 1.46889 * 110.99974 * 187.25095 * 10 9 8 12 12 C 1.50706 * 109.47109 * 170.00183 * 11 10 9 13 13 O 1.21281 * 119.99699 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00080 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99969 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47148 * 179.72251 * 15 14 12 17 17 H 1.08002 * 120.00318 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99922 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99824 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99920 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46742 * 90.00640 * 20 18 16 22 22 H 1.48496 * 109.46943 * 209.99935 * 20 18 16 23 23 H 1.48493 * 109.47567 * 330.00545 * 20 18 16 24 24 C 1.46905 * 111.26630 * 63.10523 * 10 9 8 25 25 C 1.47086 * 120.87939 * 179.71942 * 7 6 5 26 26 S 1.76751 * 109.96947 * 359.51472 * 6 5 4 27 27 H 1.08994 * 109.47058 * 298.46925 * 1 2 3 28 28 H 1.09000 * 109.46981 * 58.47478 * 1 2 3 29 29 H 1.09008 * 109.46850 * 178.47044 * 1 2 3 30 30 H 1.09003 * 109.46814 * 181.52937 * 3 2 1 31 31 H 1.09001 * 109.46829 * 301.52950 * 3 2 1 32 32 H 1.08996 * 109.47072 * 61.53037 * 3 2 1 33 33 H 1.08991 * 109.13639 * 2.02343 * 4 2 1 34 34 H 1.09001 * 109.13396 * 121.08557 * 4 2 1 35 35 H 1.09006 * 109.63047 * 111.49054 * 8 7 6 36 36 H 1.09005 * 109.78552 * 351.00876 * 8 7 6 37 37 H 1.09001 * 109.49466 * 186.21025 * 9 8 7 38 38 H 1.09003 * 109.51513 * 66.14095 * 9 8 7 39 39 H 1.09004 * 109.47256 * 50.00550 * 11 10 9 40 40 H 1.08998 * 109.47820 * 290.00360 * 11 10 9 41 41 H 0.97005 * 120.00161 * 359.72088 * 14 12 11 42 42 H 1.09001 * 109.46512 * 299.72412 * 15 14 12 43 43 H 1.08998 * 109.47174 * 59.71534 * 15 14 12 44 44 H 0.97005 * 119.99648 * 179.97438 * 19 18 16 45 45 H 1.08997 * 109.49012 * 56.85291 * 24 10 9 46 46 H 1.08996 * 109.49247 * 176.93846 * 24 10 9 47 47 H 1.08997 * 109.63282 * 248.51052 * 25 7 6 48 48 H 1.08999 * 109.62554 * 8.89483 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0680 1.4323 0.0000 4 6 2.0722 -0.7867 -1.2036 5 7 2.8623 -1.9196 -0.7759 6 6 3.0185 -2.1534 0.4775 7 7 3.7420 -3.1998 1.0010 8 6 4.4114 -4.1698 0.1210 9 6 4.0113 -5.5824 0.5602 10 7 4.2941 -5.7449 1.9925 11 6 4.0862 -7.1361 2.4155 12 6 4.6152 -7.3202 3.8146 13 8 5.1165 -6.3845 4.4013 14 7 4.5322 -8.5247 4.4135 15 6 5.0460 -8.7034 5.7738 16 6 4.8272 -10.1292 6.2101 17 1 4.3525 -10.8319 5.5412 18 6 5.2330 -10.5366 7.4632 19 7 5.8106 -9.6809 8.2779 20 14 4.9612 -12.3038 8.0043 21 1 6.1409 -13.1236 7.6281 22 1 4.7774 -12.3477 9.4772 23 1 3.7496 -12.8448 7.3378 24 6 3.4879 -4.8222 2.8029 25 6 3.8665 -3.3785 2.4556 26 16 2.1729 -0.9281 1.4301 27 1 -0.3633 0.4898 0.9033 28 1 -0.3633 0.5373 -0.8760 29 1 -0.3633 -1.0274 -0.0274 30 1 3.1574 1.4112 -0.0274 31 1 1.6926 1.9614 -0.8760 32 1 1.7371 1.9447 0.9034 33 1 1.2354 -1.1378 -1.8073 34 1 2.6958 -0.1287 -1.8089 35 1 5.4921 -4.0533 0.2025 36 1 4.1023 -4.0060 -0.9114 37 1 4.5828 -6.3157 -0.0089 38 1 2.9467 -5.7318 0.3803 39 1 4.6146 -7.8053 1.7364 40 1 3.0210 -7.3664 2.3967 41 1 4.1282 -9.2722 3.9455 42 1 6.1121 -8.4773 5.7920 43 1 4.5204 -8.0312 6.4520 44 1 6.0958 -9.9675 9.1597 45 1 2.4305 -4.9817 2.5918 46 1 3.6797 -5.0042 3.8603 47 1 4.8948 -3.1859 2.7616 48 1 3.1967 -2.6879 2.9679 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754649819.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:57 Heat of formation + Delta-G solvation = 2.577400 kcal Electronic energy + Delta-G solvation = -27075.512617 eV Core-core repulsion = 23291.874651 eV Total energy + Delta-G solvation = -3783.637967 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.82806 -38.74828 -37.94414 -35.69251 -34.15849 -33.38814 -32.34305 -31.35594 -29.42643 -27.93088 -27.50900 -26.30113 -24.74311 -23.94615 -22.55964 -22.17913 -20.91893 -19.70003 -19.37508 -17.89767 -17.13009 -16.59042 -15.80408 -15.64929 -15.47751 -15.38063 -15.24820 -14.83326 -14.68939 -14.42455 -14.34640 -14.02522 -13.84664 -13.69395 -13.16526 -13.14000 -12.79969 -12.71215 -12.40605 -12.19029 -11.97549 -11.90010 -11.81845 -11.70051 -11.49446 -11.40162 -11.28081 -11.09210 -10.98600 -10.83364 -10.58305 -10.32378 -9.41194 -9.31592 -9.10628 -8.74803 -8.51332 -8.27764 -7.96363 -7.87964 -6.18062 -4.25041 0.96676 1.72459 2.01272 2.68668 3.23092 3.29245 3.31429 3.34766 3.59552 3.98281 4.20346 4.21091 4.38388 4.45073 4.54032 4.81453 4.92343 5.04752 5.07650 5.11362 5.14443 5.17548 5.18083 5.19479 5.28719 5.34227 5.36440 5.41061 5.43432 5.46480 5.56374 5.59013 5.63294 5.70711 5.73363 5.93392 5.94610 6.47335 6.80046 6.99514 7.10201 7.30494 7.42716 7.50637 7.65689 7.68005 7.95765 8.61382 8.77193 9.09540 9.41739 10.92039 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.029098 B = 0.001868 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.018757 B =14986.436051 C =15397.138975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.057 4.057 3 C -0.127 4.127 4 C 0.077 3.923 5 N -0.620 5.620 6 C 0.445 3.555 7 N -0.581 5.581 8 C 0.137 3.863 9 C 0.041 3.959 10 N -0.518 5.518 11 C 0.036 3.964 12 C 0.499 3.501 13 O -0.539 6.539 14 N -0.714 5.714 15 C 0.252 3.748 16 C -0.544 4.544 17 H 0.063 0.937 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.038 3.962 25 C 0.134 3.866 26 S -0.201 6.201 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.037 0.963 39 H 0.101 0.899 40 H 0.058 0.942 41 H 0.390 0.610 42 H 0.027 0.973 43 H 0.026 0.974 44 H 0.266 0.734 45 H 0.032 0.968 46 H 0.114 0.886 47 H 0.085 0.915 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.712 17.859 -20.373 28.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.169 4.169 3 C -0.186 4.186 4 C -0.057 4.057 5 N -0.352 5.352 6 C 0.059 3.941 7 N -0.302 5.302 8 C 0.012 3.988 9 C -0.089 4.089 10 N -0.243 5.243 11 C -0.095 4.095 12 C 0.283 3.717 13 O -0.417 6.417 14 N -0.363 5.363 15 C 0.131 3.869 16 C -0.582 4.582 17 H 0.081 0.919 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.731 3.269 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.090 4.090 25 C 0.011 3.989 26 S 0.028 5.972 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.056 0.944 39 H 0.119 0.881 40 H 0.076 0.924 41 H 0.222 0.778 42 H 0.045 0.955 43 H 0.044 0.956 44 H 0.076 0.924 45 H 0.051 0.949 46 H 0.132 0.868 47 H 0.103 0.897 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.617 18.465 -19.199 27.997 hybrid contribution -1.324 -1.369 -0.615 2.002 sum -9.942 17.096 -19.814 27.995 Atomic orbital electron populations 1.21896 0.90731 1.03144 1.02861 1.24220 0.99816 0.98876 0.94008 1.21890 1.01666 0.92195 1.02848 1.22565 0.96950 0.89867 0.96276 1.69959 1.28560 1.23345 1.13380 1.23440 0.91010 0.90053 0.89567 1.46215 1.52293 1.25067 1.06601 1.21730 0.97225 0.85664 0.94187 1.22561 0.99612 0.97458 0.89219 1.61553 1.56373 1.03904 1.02427 1.22017 1.00298 0.90673 0.96545 1.20270 0.80356 0.83776 0.87339 1.90624 1.44887 1.40332 1.65885 1.46466 1.60433 1.10326 1.19097 1.19085 0.94919 0.96661 0.76251 1.21228 1.41254 0.95118 1.00646 0.91928 1.24955 0.94721 0.98110 0.96252 1.69974 1.39234 1.34611 1.08390 0.86416 0.78603 0.84003 0.77886 1.20451 1.21006 1.19786 1.22677 0.94149 0.91158 1.01034 1.21853 1.03078 0.96598 0.77341 1.86667 1.63343 1.30695 1.16466 0.91487 0.90986 0.91578 0.91523 0.90995 0.91490 0.89460 0.89453 0.90667 0.88548 0.89246 0.94430 0.88108 0.92390 0.77810 0.95500 0.95603 0.92438 0.94935 0.86776 0.89701 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.82 8.43 37.16 0.31 -0.50 16 2 C -0.06 -0.45 1.21 -90.27 -0.11 -0.56 16 3 C -0.13 -0.81 8.44 37.16 0.31 -0.49 16 4 C 0.08 0.69 6.95 -4.71 -0.03 0.66 16 5 N -0.62 -7.40 9.91 -62.17 -0.62 -8.02 16 6 C 0.45 5.42 7.98 -89.68 -0.72 4.70 16 7 N -0.58 -6.97 3.09 -173.61 -0.54 -7.51 16 8 C 0.14 1.47 6.66 -3.60 -0.02 1.45 16 9 C 0.04 0.43 5.62 -3.70 -0.02 0.41 16 10 N -0.52 -6.96 4.37 -235.76 -1.03 -7.99 16 11 C 0.04 0.49 5.45 -4.98 -0.03 0.46 16 12 C 0.50 9.45 7.49 -10.98 -0.08 9.37 16 13 O -0.54 -12.26 14.33 5.56 0.08 -12.18 16 14 N -0.71 -14.48 5.55 -61.47 -0.34 -14.82 16 15 C 0.25 6.54 5.43 -5.19 -0.03 6.51 16 16 C -0.54 -14.57 9.28 -34.44 -0.32 -14.89 16 17 H 0.06 1.56 7.60 -52.49 -0.40 1.17 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 19 N -0.88 -25.86 13.29 55.43 0.74 -25.12 16 20 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 C 0.04 0.52 5.26 -3.70 -0.02 0.50 16 25 C 0.13 1.65 6.63 -3.60 -0.02 1.63 16 26 S -0.20 -2.18 20.51 -107.50 -2.21 -4.39 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.70 7.65 -51.93 -0.40 0.31 16 34 H 0.09 0.70 7.65 -51.93 -0.40 0.31 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 1.01 7.28 -51.93 -0.38 0.63 16 37 H 0.09 0.79 7.99 -51.93 -0.41 0.37 16 38 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.10 1.15 7.97 -51.93 -0.41 0.74 16 40 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 41 H 0.39 6.72 8.32 -40.82 -0.34 6.38 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 45 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.11 1.87 5.77 -51.93 -0.30 1.57 16 47 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.08 0.99 6.55 -51.93 -0.34 0.65 16 LS Contribution 393.10 15.07 5.92 5.92 Total: -1.00 -32.33 393.10 -11.89 -44.22 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -8.01 Total: 3.35 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: -0.87 Total: 10.88 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: -1.79 Total: -63.46 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.08 Total: -12.18 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: -2.18 SS G_CDS: -2.21 Total: -4.39 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.33 -11.89 -44.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754649819.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.802 kcal (2) G-P(sol) polarization free energy of solvation -32.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds