Wall clock time and date at job start Tue Mar 31 2020 23:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 110.58512 * 2 1 4 4 C 1.53670 * 110.66149 * 236.83145 * 2 1 3 5 5 N 1.44589 * 111.23715 * 241.31680 * 4 2 1 6 6 C 1.28453 * 119.84924 * 0.49709 * 5 4 2 7 7 N 1.37570 * 125.01108 * 179.77347 * 6 5 4 8 8 C 1.47079 * 120.88621 * 359.70483 * 7 6 5 9 9 C 1.53235 * 108.52223 * 231.20421 * 8 7 6 10 10 N 1.46904 * 109.34080 * 306.16626 * 9 8 7 11 11 C 1.46889 * 110.99974 * 187.25095 * 10 9 8 12 12 C 1.50706 * 109.47109 * 170.00183 * 11 10 9 13 13 O 1.21281 * 119.99699 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00080 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99969 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47148 * 179.72251 * 15 14 12 17 17 H 1.08002 * 120.00318 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99922 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99824 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99920 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46742 * 90.00640 * 20 18 16 22 22 H 1.48496 * 109.46943 * 209.99935 * 20 18 16 23 23 H 1.48493 * 109.47567 * 330.00545 * 20 18 16 24 24 C 1.46905 * 111.26630 * 63.10523 * 10 9 8 25 25 C 1.47086 * 120.87939 * 179.71942 * 7 6 5 26 26 S 1.76751 * 109.96947 * 359.51472 * 6 5 4 27 27 H 1.08994 * 109.47058 * 298.46925 * 1 2 3 28 28 H 1.09000 * 109.46981 * 58.47478 * 1 2 3 29 29 H 1.09008 * 109.46850 * 178.47044 * 1 2 3 30 30 H 1.09003 * 109.46814 * 181.52937 * 3 2 1 31 31 H 1.09001 * 109.46829 * 301.52950 * 3 2 1 32 32 H 1.08996 * 109.47072 * 61.53037 * 3 2 1 33 33 H 1.08991 * 109.13639 * 2.02343 * 4 2 1 34 34 H 1.09001 * 109.13396 * 121.08557 * 4 2 1 35 35 H 1.09006 * 109.63047 * 111.49054 * 8 7 6 36 36 H 1.09005 * 109.78552 * 351.00876 * 8 7 6 37 37 H 1.09001 * 109.49466 * 186.21025 * 9 8 7 38 38 H 1.09003 * 109.51513 * 66.14095 * 9 8 7 39 39 H 1.09004 * 109.47256 * 50.00550 * 11 10 9 40 40 H 1.08998 * 109.47820 * 290.00360 * 11 10 9 41 41 H 0.97005 * 120.00161 * 359.72088 * 14 12 11 42 42 H 1.09001 * 109.46512 * 299.72412 * 15 14 12 43 43 H 1.08998 * 109.47174 * 59.71534 * 15 14 12 44 44 H 0.97005 * 119.99648 * 179.97438 * 19 18 16 45 45 H 1.08997 * 109.49012 * 56.85291 * 24 10 9 46 46 H 1.08996 * 109.49247 * 176.93846 * 24 10 9 47 47 H 1.08997 * 109.63282 * 248.51052 * 25 7 6 48 48 H 1.08999 * 109.62554 * 8.89483 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0680 1.4323 0.0000 4 6 2.0722 -0.7867 -1.2036 5 7 2.8623 -1.9196 -0.7759 6 6 3.0185 -2.1534 0.4775 7 7 3.7420 -3.1998 1.0010 8 6 4.4114 -4.1698 0.1210 9 6 4.0113 -5.5824 0.5602 10 7 4.2941 -5.7449 1.9925 11 6 4.0862 -7.1361 2.4155 12 6 4.6152 -7.3202 3.8146 13 8 5.1165 -6.3845 4.4013 14 7 4.5322 -8.5247 4.4135 15 6 5.0460 -8.7034 5.7738 16 6 4.8272 -10.1292 6.2101 17 1 4.3525 -10.8319 5.5412 18 6 5.2330 -10.5366 7.4632 19 7 5.8106 -9.6809 8.2779 20 14 4.9612 -12.3038 8.0043 21 1 6.1409 -13.1236 7.6281 22 1 4.7774 -12.3477 9.4772 23 1 3.7496 -12.8448 7.3378 24 6 3.4879 -4.8222 2.8029 25 6 3.8665 -3.3785 2.4556 26 16 2.1729 -0.9281 1.4301 27 1 -0.3633 0.4898 0.9033 28 1 -0.3633 0.5373 -0.8760 29 1 -0.3633 -1.0274 -0.0274 30 1 3.1574 1.4112 -0.0274 31 1 1.6926 1.9614 -0.8760 32 1 1.7371 1.9447 0.9034 33 1 1.2354 -1.1378 -1.8073 34 1 2.6958 -0.1287 -1.8089 35 1 5.4921 -4.0533 0.2025 36 1 4.1023 -4.0060 -0.9114 37 1 4.5828 -6.3157 -0.0089 38 1 2.9467 -5.7318 0.3803 39 1 4.6146 -7.8053 1.7364 40 1 3.0210 -7.3664 2.3967 41 1 4.1282 -9.2722 3.9455 42 1 6.1121 -8.4773 5.7920 43 1 4.5204 -8.0312 6.4520 44 1 6.0958 -9.9675 9.1597 45 1 2.4305 -4.9817 2.5918 46 1 3.6797 -5.0042 3.8603 47 1 4.8948 -3.1859 2.7616 48 1 3.1967 -2.6879 2.9679 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754649819.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:57 Heat of formation + Delta-G solvation = -20.895326 kcal Electronic energy + Delta-G solvation = -27076.530471 eV Core-core repulsion = 23291.874651 eV Total energy + Delta-G solvation = -3784.655820 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.01268 -39.94574 -38.86836 -36.68229 -35.99387 -34.35792 -34.17870 -32.30061 -30.68021 -29.09451 -28.42822 -27.38145 -25.89105 -24.93435 -24.23086 -23.13513 -21.79250 -21.33427 -20.22459 -18.97851 -18.66964 -17.58141 -17.42618 -16.96964 -16.67760 -16.38556 -16.22830 -16.13511 -15.78959 -15.64797 -15.28863 -15.10991 -15.03257 -14.61452 -14.31744 -14.12659 -13.91447 -13.82662 -13.65470 -13.29632 -13.21878 -12.94975 -12.90036 -12.71329 -12.60528 -12.49016 -12.37565 -12.25432 -12.17958 -12.16906 -12.10550 -11.47096 -11.28290 -10.78788 -10.65088 -10.15896 -9.78705 -9.49363 -9.22194 -8.82610 -8.28176 -6.44479 0.18715 0.98043 1.13096 1.43650 1.45847 1.56927 1.78704 1.83394 2.27507 2.45981 2.99711 3.06758 3.32720 3.62163 3.64014 3.88617 3.90571 3.95220 4.04032 4.13443 4.22244 4.28527 4.39961 4.43022 4.52270 4.57821 4.61287 4.65103 4.71215 4.77886 4.79388 4.81667 4.82527 4.85739 5.01324 5.11316 5.13692 5.20541 5.27342 5.50888 5.57021 5.70362 5.81247 5.87514 6.01428 6.20606 6.67176 6.82922 6.97809 7.25193 7.56043 8.83813 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.029098 B = 0.001868 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.018757 B =14986.436051 C =15397.138975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.045 4.045 3 C -0.124 4.124 4 C 0.072 3.928 5 N -0.633 5.633 6 C 0.436 3.564 7 N -0.586 5.586 8 C 0.138 3.862 9 C 0.048 3.952 10 N -0.536 5.536 11 C 0.051 3.949 12 C 0.494 3.506 13 O -0.582 6.582 14 N -0.710 5.710 15 C 0.269 3.731 16 C -0.556 4.556 17 H 0.084 0.916 18 C 0.003 3.997 19 N -0.931 5.931 20 Si 0.984 3.016 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.255 1.255 24 C 0.046 3.954 25 C 0.143 3.857 26 S -0.240 6.240 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.043 0.957 39 H 0.134 0.866 40 H 0.084 0.916 41 H 0.408 0.592 42 H -0.014 1.014 43 H -0.014 1.014 44 H 0.268 0.732 45 H 0.038 0.962 46 H 0.081 0.919 47 H 0.071 0.929 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.340 17.027 -23.112 30.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.157 4.157 3 C -0.183 4.183 4 C -0.061 4.061 5 N -0.365 5.365 6 C 0.050 3.950 7 N -0.307 5.307 8 C 0.014 3.986 9 C -0.080 4.080 10 N -0.261 5.261 11 C -0.080 4.080 12 C 0.281 3.719 13 O -0.463 6.463 14 N -0.361 5.361 15 C 0.146 3.854 16 C -0.593 4.593 17 H 0.102 0.898 18 C -0.197 4.197 19 N -0.569 5.569 20 Si 0.807 3.193 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.179 1.179 24 C -0.083 4.083 25 C 0.020 3.980 26 S -0.011 6.011 27 H 0.086 0.914 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.120 0.880 37 H 0.133 0.867 38 H 0.061 0.939 39 H 0.152 0.848 40 H 0.101 0.899 41 H 0.243 0.757 42 H 0.004 0.996 43 H 0.004 0.996 44 H 0.077 0.923 45 H 0.056 0.944 46 H 0.099 0.901 47 H 0.090 0.910 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.274 17.635 -22.010 30.016 hybrid contribution -0.819 -0.967 0.166 1.278 sum -11.093 16.668 -21.844 29.632 Atomic orbital electron populations 1.21897 0.89330 1.02939 1.04122 1.24382 1.00734 0.98967 0.91604 1.21893 1.01018 0.91248 1.04124 1.22700 0.97322 0.89484 0.96638 1.69938 1.28793 1.24472 1.13317 1.23543 0.91359 0.90251 0.89876 1.46224 1.52654 1.25561 1.06281 1.21770 0.96965 0.85642 0.94233 1.22601 1.00335 0.97868 0.87232 1.61504 1.56881 1.03653 1.04044 1.21945 1.01734 0.91551 0.92739 1.21316 0.79015 0.82331 0.89216 1.90615 1.46568 1.41611 1.67489 1.46189 1.60755 1.11901 1.17246 1.18484 0.92129 0.96032 0.78737 1.21640 1.41041 0.95439 1.01225 0.89791 1.26066 0.94124 1.03168 0.96345 1.70141 1.40537 1.37300 1.08945 0.85169 0.79219 0.77705 0.77194 1.19634 1.21084 1.17918 1.22474 0.94475 0.92018 0.99308 1.21634 1.02261 0.95968 0.78111 1.86785 1.63679 1.31401 1.19284 0.91411 0.88364 0.92600 0.92584 0.88368 0.91386 0.88260 0.88344 0.91009 0.87959 0.86742 0.93921 0.84825 0.89856 0.75669 0.99592 0.99582 0.92316 0.94375 0.90086 0.91042 0.89625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 8.43 71.98 0.61 -0.72 16 2 C -0.04 -0.65 1.21 -10.57 -0.01 -0.66 16 3 C -0.12 -1.33 8.44 71.98 0.61 -0.73 16 4 C 0.07 1.15 6.95 86.96 0.60 1.75 16 5 N -0.63 -14.34 9.91 -350.61 -3.47 -17.82 16 6 C 0.44 10.41 7.98 180.02 1.44 11.84 16 7 N -0.59 -13.92 3.09 -703.17 -2.17 -16.09 16 8 C 0.14 2.80 6.66 86.35 0.58 3.38 16 9 C 0.05 0.90 5.62 86.38 0.49 1.38 16 10 N -0.54 -13.79 4.37 -899.82 -3.93 -17.72 16 11 C 0.05 1.27 5.45 85.56 0.47 1.74 16 12 C 0.49 18.89 7.49 87.66 0.66 19.55 16 13 O -0.58 -27.77 14.33 -3.03 -0.04 -27.81 16 14 N -0.71 -29.00 5.55 -466.78 -2.59 -31.59 16 15 C 0.27 14.61 5.43 85.63 0.46 15.08 16 16 C -0.56 -29.94 9.28 25.60 0.24 -29.70 16 17 H 0.08 4.06 7.60 -2.91 -0.02 4.04 16 18 C 0.00 0.14 5.46 84.66 0.46 0.60 16 19 N -0.93 -56.08 13.29 21.45 0.28 -55.79 16 20 Si 0.98 42.10 29.54 68.60 2.03 44.13 16 21 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 22 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 24 C 0.05 1.28 5.26 86.38 0.45 1.73 16 25 C 0.14 3.67 6.63 86.35 0.57 4.24 16 26 S -0.24 -5.20 20.51 -56.49 -1.16 -6.36 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.10 1.36 7.65 -2.39 -0.02 1.34 16 34 H 0.10 1.36 7.65 -2.39 -0.02 1.35 16 35 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.10 1.97 7.28 -2.38 -0.02 1.95 16 37 H 0.11 1.60 7.99 -2.39 -0.02 1.58 16 38 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.13 2.54 7.97 -2.39 -0.02 2.52 16 40 H 0.08 1.74 8.12 -2.39 -0.02 1.72 16 41 H 0.41 13.52 8.32 -92.70 -0.77 12.74 16 42 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 43 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 44 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 45 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.08 2.81 5.77 -2.39 -0.01 2.80 16 47 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.09 2.13 6.55 -2.39 -0.02 2.12 16 Total: -1.00 -73.79 393.10 -3.26 -77.05 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.18 Total: 22.52 kcal Atomic # 6 Polarization: 21.87 SS G_CDS: 7.62 Total: 29.49 kcal Atomic # 7 Polarization: -127.13 SS G_CDS: -11.88 Total: -139.01 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.04 Total: -27.81 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Atomic # 16 Polarization: -5.20 SS G_CDS: -1.16 Total: -6.36 kcal Total: -73.79 -3.26 -77.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754649819.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.159 kcal (2) G-P(sol) polarization free energy of solvation -73.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds