Wall clock time and date at job start Tue Mar 31 2020 23:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52993 * 110.71792 * 2 1 4 4 C 1.53677 * 110.65595 * 123.07137 * 2 1 3 5 5 N 1.44595 * 111.23537 * 118.44821 * 4 2 1 6 6 C 1.28447 * 119.84942 * 359.97438 * 5 4 2 7 7 N 1.37566 * 125.01552 * 180.02562 * 6 5 4 8 8 C 1.46962 * 120.59628 * 179.75076 * 7 6 5 9 9 C 1.53808 * 108.40182 * 124.75671 * 8 7 6 10 10 N 1.46970 * 108.58069 * 49.63751 * 9 8 7 11 11 C 1.34775 * 120.59528 * 124.66359 * 10 9 8 12 12 O 1.21591 * 119.99517 * 174.91412 * 11 10 9 13 13 N 1.34768 * 120.00169 * 354.92406 * 11 10 9 14 14 C 1.46505 * 120.00065 * 185.05882 * 13 11 10 15 15 C 1.53003 * 109.47029 * 179.97438 * 14 13 11 16 16 C 1.50695 * 109.47067 * 179.97438 * 15 14 13 17 17 H 1.08007 * 120.00245 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00254 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00190 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99920 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46928 * 89.99690 * 20 18 16 22 22 H 1.48500 * 109.47507 * 210.00051 * 20 18 16 23 23 H 1.48496 * 109.47140 * 330.00234 * 20 18 16 24 24 C 1.46968 * 118.80888 * 304.65264 * 10 9 8 25 25 C 1.46965 * 120.59106 * 0.03055 * 7 6 5 26 26 S 1.76765 * 109.97166 * 0.27208 * 6 5 4 27 27 H 1.08999 * 109.47129 * 296.92515 * 1 2 3 28 28 H 1.08996 * 109.46884 * 56.92907 * 1 2 3 29 29 H 1.08999 * 109.46618 * 176.92667 * 1 2 3 30 30 H 1.08998 * 109.47271 * 183.07396 * 3 2 1 31 31 H 1.09008 * 109.47154 * 303.07051 * 3 2 1 32 32 H 1.09000 * 109.47355 * 63.07026 * 3 2 1 33 33 H 1.09000 * 109.13689 * 357.97643 * 4 2 1 34 34 H 1.08996 * 109.13362 * 238.91232 * 4 2 1 35 35 H 1.09002 * 109.61319 * 244.53998 * 8 7 6 36 36 H 1.08996 * 109.61077 * 5.05462 * 8 7 6 37 37 H 1.09001 * 109.74579 * 289.85117 * 9 8 7 38 38 H 1.09001 * 109.53721 * 169.30269 * 9 8 7 39 39 H 0.96999 * 120.00218 * 5.05275 * 13 11 10 40 40 H 1.08996 * 109.47044 * 299.99894 * 14 13 11 41 41 H 1.09004 * 109.46675 * 60.00237 * 14 13 11 42 42 H 1.08996 * 109.47589 * 300.00134 * 15 14 13 43 43 H 1.08999 * 109.46683 * 60.00118 * 15 14 13 44 44 H 0.96999 * 119.99691 * 180.02562 * 19 18 16 45 45 H 1.09003 * 109.60860 * 295.47593 * 24 10 9 46 46 H 1.09004 * 109.60841 * 174.96605 * 24 10 9 47 47 H 1.08995 * 109.61371 * 354.94252 * 25 7 6 48 48 H 1.09000 * 109.60754 * 115.28897 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0713 1.4310 0.0000 4 6 2.0722 -0.7847 1.2050 5 7 2.8577 -1.9216 0.7792 6 6 3.0181 -2.1546 -0.4737 7 7 3.7412 -3.2021 -0.9955 8 6 3.8570 -3.3801 -2.4497 9 6 5.3501 -3.4325 -2.8151 10 7 6.0157 -4.3971 -1.9283 11 6 6.7241 -5.4234 -2.4395 12 8 7.3463 -6.1608 -1.6995 13 7 6.7428 -5.6323 -3.7708 14 6 7.4203 -6.8105 -4.3179 15 6 7.2936 -6.8093 -5.8427 16 6 7.9909 -8.0208 -6.4056 17 1 8.4757 -8.7218 -5.7421 18 6 8.0102 -8.2345 -7.7675 19 7 8.6184 -9.2921 -8.2587 20 14 7.1726 -7.0218 -8.9152 21 1 8.1413 -5.9704 -9.3168 22 1 6.6887 -7.7368 -10.1234 23 1 6.0218 -6.3940 -8.2175 24 6 5.8953 -4.2223 -0.4740 25 6 4.4067 -4.1667 -0.1086 26 16 2.1786 -0.9266 -1.4285 27 1 -0.3633 0.4653 0.9163 28 1 -0.3633 0.5608 -0.8612 29 1 -0.3632 -1.0262 -0.0551 30 1 3.1597 1.4078 -0.0551 31 1 1.6753 1.9693 -0.8612 32 1 1.7646 1.9355 0.9162 33 1 1.2353 -1.1348 1.8093 34 1 2.6957 -0.1258 1.8092 35 1 3.3728 -4.3113 -2.7440 36 1 3.3832 -2.5415 -2.9598 37 1 5.7961 -2.4466 -2.6838 38 1 5.4607 -3.7516 -3.8515 39 1 6.3077 -5.0027 -4.3667 40 1 8.4740 -6.7852 -4.0405 41 1 6.9602 -7.7133 -3.9162 42 1 6.2398 -6.8348 -6.1199 43 1 7.7533 -5.9065 -6.2447 44 1 8.6323 -9.4422 -9.2169 45 1 6.3801 -3.2926 -0.1760 46 1 6.3660 -5.0630 0.0357 47 1 4.2962 -3.8476 0.9277 48 1 3.9587 -5.1519 -0.2378 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784452936.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:02 Heat of formation + Delta-G solvation = 11.206019 kcal Electronic energy + Delta-G solvation = -27255.839110 eV Core-core repulsion = 23472.575308 eV Total energy + Delta-G solvation = -3783.263802 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -40.42148 -38.95082 -37.84989 -35.32940 -35.03242 -33.32007 -32.80900 -31.75388 -30.06253 -28.29351 -28.02996 -26.16346 -25.04756 -24.05887 -22.94749 -21.88922 -20.92144 -20.34827 -19.23425 -18.41568 -17.52174 -16.94416 -16.33767 -15.92398 -15.78910 -15.67003 -15.54393 -14.87106 -14.61960 -14.43423 -14.24445 -14.08250 -14.03248 -13.76910 -13.32126 -13.28125 -13.06983 -12.82111 -12.73171 -12.59891 -12.12320 -11.97169 -11.91728 -11.86958 -11.64144 -11.46949 -11.43609 -11.21590 -10.74205 -10.41187 -10.27453 -9.98488 -9.78161 -9.45595 -9.33584 -9.16491 -8.65844 -8.58675 -8.35481 -8.06149 -6.11427 -4.11548 0.81454 1.57918 1.86401 2.35646 2.84797 3.24418 3.31738 3.33025 3.39855 3.86569 4.00436 4.10515 4.28196 4.36901 4.39317 4.52685 4.69348 4.80511 4.85168 4.98330 5.04112 5.05637 5.09753 5.14326 5.20927 5.21324 5.25548 5.27684 5.33026 5.45903 5.50096 5.58781 5.61697 5.71901 6.01822 6.22942 6.25871 6.37203 6.56467 6.76226 6.80790 6.96457 7.20718 7.23499 7.52804 7.66461 8.14851 8.44279 8.80627 8.93339 9.48496 11.01567 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.019367 B = 0.002182 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.397641 B =12830.500975 C =13931.029024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.055 4.055 3 C -0.128 4.128 4 C 0.076 3.924 5 N -0.614 5.614 6 C 0.443 3.557 7 N -0.580 5.580 8 C 0.112 3.888 9 C 0.099 3.901 10 N -0.636 5.636 11 C 0.705 3.295 12 O -0.588 6.588 13 N -0.742 5.742 14 C 0.147 3.853 15 C -0.021 4.021 16 C -0.522 4.522 17 H 0.076 0.924 18 C 0.069 3.931 19 N -0.898 5.898 20 Si 0.883 3.117 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.266 1.266 24 C 0.118 3.882 25 C 0.116 3.884 26 S -0.202 6.202 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.390 0.610 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.021 0.979 43 H 0.017 0.983 44 H 0.265 0.735 45 H 0.067 0.933 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.503 23.287 17.457 33.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.167 4.167 3 C -0.187 4.187 4 C -0.058 4.058 5 N -0.345 5.345 6 C 0.057 3.943 7 N -0.301 5.301 8 C -0.012 4.012 9 C -0.026 4.026 10 N -0.375 5.375 11 C 0.406 3.594 12 O -0.466 6.466 13 N -0.397 5.397 14 C 0.024 3.976 15 C -0.059 4.059 16 C -0.560 4.560 17 H 0.094 0.906 18 C -0.133 4.133 19 N -0.536 5.536 20 Si 0.710 3.290 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.191 1.191 24 C -0.006 4.006 25 C -0.009 4.009 26 S 0.027 5.973 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.225 0.775 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.039 0.961 43 H 0.035 0.965 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.126 0.874 47 H 0.123 0.877 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.834 22.386 17.368 32.957 hybrid contribution -0.828 1.171 -0.476 1.511 sum -17.662 23.557 16.892 33.945 Atomic orbital electron populations 1.21905 0.90613 1.03265 1.02916 1.24224 0.99853 0.98866 0.93771 1.21909 1.01734 0.92163 1.02909 1.22612 0.97119 0.89754 0.96324 1.69935 1.27967 1.23085 1.13478 1.23433 0.91290 0.89917 0.89669 1.45927 1.52763 1.25427 1.05948 1.22236 0.96948 1.03334 0.78722 1.22076 0.91727 0.93938 0.94865 1.47203 1.55168 1.28604 1.06516 1.15919 0.79775 0.80635 0.83057 1.90904 1.47899 1.48997 1.58841 1.45705 1.60119 1.29192 1.04731 1.21408 0.96257 0.84673 0.95220 1.19791 0.97474 0.98266 0.90365 1.20906 1.35035 1.07341 0.92752 0.90574 1.25006 0.94881 0.95283 0.98170 1.69905 1.43225 1.27412 1.13074 0.86746 0.80342 0.81451 0.80483 1.20245 1.21291 1.19105 1.21832 0.95307 1.03369 0.80123 1.22139 0.91809 0.91880 0.95117 1.86585 1.63452 1.30568 1.16690 0.90889 0.91477 0.91476 0.91439 0.91483 0.90909 0.89246 0.89208 0.90015 0.88839 0.90612 0.88780 0.77459 0.92011 0.92128 0.96071 0.96496 0.92554 0.91450 0.87444 0.87653 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.67 8.45 37.16 0.31 -0.35 16 2 C -0.05 -0.36 1.21 -90.27 -0.11 -0.47 16 3 C -0.13 -0.66 8.43 37.15 0.31 -0.35 16 4 C 0.08 0.58 6.95 -4.71 -0.03 0.55 16 5 N -0.61 -6.45 9.86 -62.16 -0.61 -7.06 16 6 C 0.44 4.54 7.97 -89.69 -0.71 3.83 16 7 N -0.58 -5.66 3.02 -173.37 -0.52 -6.18 16 8 C 0.11 0.96 6.66 -3.37 -0.02 0.93 16 9 C 0.10 0.91 6.61 -3.37 -0.02 0.89 16 10 N -0.64 -7.87 2.95 -177.93 -0.52 -8.40 16 11 C 0.70 11.73 8.29 -86.93 -0.72 11.01 16 12 O -0.59 -12.13 15.78 5.29 0.08 -12.05 16 13 N -0.74 -12.19 5.47 -65.22 -0.36 -12.54 16 14 C 0.15 2.99 5.62 -4.04 -0.02 2.97 16 15 C -0.02 -0.48 4.16 -27.88 -0.12 -0.59 16 16 C -0.52 -14.50 9.66 -34.44 -0.33 -14.83 16 17 H 0.08 2.30 7.99 -52.48 -0.42 1.88 16 18 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 19 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 20 Si 0.88 20.81 27.47 -169.99 -4.67 16.14 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.27 -5.88 6.54 56.52 0.37 -5.51 16 24 C 0.12 1.29 6.58 -3.59 -0.02 1.27 16 25 C 0.12 1.13 6.65 -3.59 -0.02 1.10 16 26 S -0.20 -1.79 20.46 -107.50 -2.20 -3.99 16 27 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.09 0.62 7.65 -51.93 -0.40 0.23 16 34 H 0.09 0.62 7.65 -51.93 -0.40 0.23 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.72 6.46 -51.93 -0.34 0.38 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.79 5.55 -51.93 -0.29 0.50 16 39 H 0.39 5.30 5.92 -40.82 -0.24 5.06 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 43 H 0.02 0.37 7.57 -51.93 -0.39 -0.03 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.11 1.31 7.02 -51.93 -0.36 0.95 16 47 H 0.11 1.01 7.20 -51.93 -0.37 0.64 16 48 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 388.63 15.07 5.86 5.86 Total: -1.00 -33.72 388.63 -11.61 -45.32 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.82 Total: 1.52 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: -1.61 Total: 7.80 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: -1.24 Total: -60.60 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.08 Total: -12.05 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.67 Total: 16.14 kcal Atomic # 16 Polarization: -1.79 SS G_CDS: -2.20 Total: -3.99 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.72 -11.61 -45.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784452936.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.529 kcal (2) G-P(sol) polarization free energy of solvation -33.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds