Wall clock time and date at job start Tue Mar 31 2020 23:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52993 * 110.71792 * 2 1 4 4 C 1.53677 * 110.65595 * 123.07137 * 2 1 3 5 5 N 1.44595 * 111.23537 * 118.44821 * 4 2 1 6 6 C 1.28447 * 119.84942 * 359.97438 * 5 4 2 7 7 N 1.37566 * 125.01552 * 180.02562 * 6 5 4 8 8 C 1.46962 * 120.59628 * 179.75076 * 7 6 5 9 9 C 1.53808 * 108.40182 * 124.75671 * 8 7 6 10 10 N 1.46970 * 108.58069 * 49.63751 * 9 8 7 11 11 C 1.34775 * 120.59528 * 124.66359 * 10 9 8 12 12 O 1.21591 * 119.99517 * 174.91412 * 11 10 9 13 13 N 1.34768 * 120.00169 * 354.92406 * 11 10 9 14 14 C 1.46505 * 120.00065 * 185.05882 * 13 11 10 15 15 C 1.53003 * 109.47029 * 179.97438 * 14 13 11 16 16 C 1.50695 * 109.47067 * 179.97438 * 15 14 13 17 17 H 1.08007 * 120.00245 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00254 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00190 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99920 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46928 * 89.99690 * 20 18 16 22 22 H 1.48500 * 109.47507 * 210.00051 * 20 18 16 23 23 H 1.48496 * 109.47140 * 330.00234 * 20 18 16 24 24 C 1.46968 * 118.80888 * 304.65264 * 10 9 8 25 25 C 1.46965 * 120.59106 * 0.03055 * 7 6 5 26 26 S 1.76765 * 109.97166 * 0.27208 * 6 5 4 27 27 H 1.08999 * 109.47129 * 296.92515 * 1 2 3 28 28 H 1.08996 * 109.46884 * 56.92907 * 1 2 3 29 29 H 1.08999 * 109.46618 * 176.92667 * 1 2 3 30 30 H 1.08998 * 109.47271 * 183.07396 * 3 2 1 31 31 H 1.09008 * 109.47154 * 303.07051 * 3 2 1 32 32 H 1.09000 * 109.47355 * 63.07026 * 3 2 1 33 33 H 1.09000 * 109.13689 * 357.97643 * 4 2 1 34 34 H 1.08996 * 109.13362 * 238.91232 * 4 2 1 35 35 H 1.09002 * 109.61319 * 244.53998 * 8 7 6 36 36 H 1.08996 * 109.61077 * 5.05462 * 8 7 6 37 37 H 1.09001 * 109.74579 * 289.85117 * 9 8 7 38 38 H 1.09001 * 109.53721 * 169.30269 * 9 8 7 39 39 H 0.96999 * 120.00218 * 5.05275 * 13 11 10 40 40 H 1.08996 * 109.47044 * 299.99894 * 14 13 11 41 41 H 1.09004 * 109.46675 * 60.00237 * 14 13 11 42 42 H 1.08996 * 109.47589 * 300.00134 * 15 14 13 43 43 H 1.08999 * 109.46683 * 60.00118 * 15 14 13 44 44 H 0.96999 * 119.99691 * 180.02562 * 19 18 16 45 45 H 1.09003 * 109.60860 * 295.47593 * 24 10 9 46 46 H 1.09004 * 109.60841 * 174.96605 * 24 10 9 47 47 H 1.08995 * 109.61371 * 354.94252 * 25 7 6 48 48 H 1.09000 * 109.60754 * 115.28897 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0713 1.4310 0.0000 4 6 2.0722 -0.7847 1.2050 5 7 2.8577 -1.9216 0.7792 6 6 3.0181 -2.1546 -0.4737 7 7 3.7412 -3.2021 -0.9955 8 6 3.8570 -3.3801 -2.4497 9 6 5.3501 -3.4325 -2.8151 10 7 6.0157 -4.3971 -1.9283 11 6 6.7241 -5.4234 -2.4395 12 8 7.3463 -6.1608 -1.6995 13 7 6.7428 -5.6323 -3.7708 14 6 7.4203 -6.8105 -4.3179 15 6 7.2936 -6.8093 -5.8427 16 6 7.9909 -8.0208 -6.4056 17 1 8.4757 -8.7218 -5.7421 18 6 8.0102 -8.2345 -7.7675 19 7 8.6184 -9.2921 -8.2587 20 14 7.1726 -7.0218 -8.9152 21 1 8.1413 -5.9704 -9.3168 22 1 6.6887 -7.7368 -10.1234 23 1 6.0218 -6.3940 -8.2175 24 6 5.8953 -4.2223 -0.4740 25 6 4.4067 -4.1667 -0.1086 26 16 2.1786 -0.9266 -1.4285 27 1 -0.3633 0.4653 0.9163 28 1 -0.3633 0.5608 -0.8612 29 1 -0.3632 -1.0262 -0.0551 30 1 3.1597 1.4078 -0.0551 31 1 1.6753 1.9693 -0.8612 32 1 1.7646 1.9355 0.9162 33 1 1.2353 -1.1348 1.8093 34 1 2.6957 -0.1258 1.8092 35 1 3.3728 -4.3113 -2.7440 36 1 3.3832 -2.5415 -2.9598 37 1 5.7961 -2.4466 -2.6838 38 1 5.4607 -3.7516 -3.8515 39 1 6.3077 -5.0027 -4.3667 40 1 8.4740 -6.7852 -4.0405 41 1 6.9602 -7.7133 -3.9162 42 1 6.2398 -6.8348 -6.1199 43 1 7.7533 -5.9065 -6.2447 44 1 8.6323 -9.4422 -9.2169 45 1 6.3801 -3.2926 -0.1760 46 1 6.3660 -5.0630 0.0357 47 1 4.2962 -3.8476 0.9277 48 1 3.9587 -5.1519 -0.2378 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784452936.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:00 Heat of formation + Delta-G solvation = -11.383650 kcal Electronic energy + Delta-G solvation = -27256.818671 eV Core-core repulsion = 23472.575308 eV Total energy + Delta-G solvation = -3784.243363 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.54474 -39.79995 -38.62855 -36.72507 -36.10862 -34.82931 -33.98303 -32.76359 -31.69763 -29.18799 -28.41550 -27.07688 -26.48850 -25.06240 -23.75142 -22.82105 -22.50199 -21.29428 -20.29426 -19.32861 -18.95825 -18.32814 -17.38965 -16.91968 -16.83618 -16.41987 -16.26488 -16.23224 -15.64713 -15.48974 -15.43041 -15.30923 -15.02684 -14.70506 -14.57670 -14.40680 -13.81755 -13.70623 -13.58031 -13.30707 -13.28875 -13.02697 -12.76057 -12.65495 -12.59447 -12.44756 -12.30252 -12.19356 -12.14957 -12.11565 -11.73812 -11.50051 -11.32374 -11.20225 -10.76856 -10.32141 -10.14447 -9.83213 -9.18292 -8.80157 -8.27805 -6.35136 0.17415 0.97238 1.14300 1.41025 1.43714 1.44285 1.55019 1.91905 2.09002 2.38959 2.88100 3.07222 3.33221 3.56141 3.65406 3.75483 3.91021 3.94095 4.05271 4.11157 4.25560 4.36729 4.41246 4.46800 4.49262 4.58096 4.61647 4.67685 4.69702 4.72836 4.77326 4.79424 4.84064 4.87644 4.89248 5.13398 5.14127 5.22622 5.38206 5.43066 5.44905 5.55584 5.67250 5.81645 6.12208 6.24887 6.71934 6.84450 6.93670 7.29145 7.51159 8.88898 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.019367 B = 0.002182 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.397641 B =12830.500975 C =13931.029024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.048 4.048 3 C -0.125 4.125 4 C 0.071 3.929 5 N -0.636 5.636 6 C 0.433 3.567 7 N -0.585 5.585 8 C 0.116 3.884 9 C 0.097 3.903 10 N -0.626 5.626 11 C 0.703 3.297 12 O -0.634 6.634 13 N -0.731 5.731 14 C 0.164 3.836 15 C -0.011 4.011 16 C -0.538 4.538 17 H 0.028 0.972 18 C 0.002 3.998 19 N -0.951 5.951 20 Si 0.960 3.040 21 H -0.266 1.266 22 H -0.288 1.288 23 H -0.233 1.233 24 C 0.121 3.879 25 C 0.128 3.872 26 S -0.217 6.217 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.407 0.593 40 H 0.040 0.960 41 H 0.042 0.958 42 H 0.039 0.961 43 H 0.035 0.965 44 H 0.267 0.733 45 H 0.077 0.923 46 H 0.091 0.909 47 H 0.107 0.893 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.983 26.931 17.166 37.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.160 4.160 3 C -0.184 4.184 4 C -0.062 4.062 5 N -0.367 5.367 6 C 0.047 3.953 7 N -0.305 5.305 8 C -0.008 4.008 9 C -0.027 4.027 10 N -0.364 5.364 11 C 0.404 3.596 12 O -0.516 6.516 13 N -0.388 5.388 14 C 0.040 3.960 15 C -0.049 4.049 16 C -0.576 4.576 17 H 0.046 0.954 18 C -0.195 4.195 19 N -0.591 5.591 20 Si 0.782 3.218 21 H -0.191 1.191 22 H -0.214 1.214 23 H -0.156 1.156 24 C -0.003 4.003 25 C 0.002 3.998 26 S 0.012 5.988 27 H 0.112 0.888 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.100 0.900 36 H 0.125 0.875 37 H 0.107 0.893 38 H 0.125 0.875 39 H 0.246 0.754 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.076 0.924 45 H 0.095 0.905 46 H 0.109 0.891 47 H 0.125 0.875 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.365 26.103 17.101 36.726 hybrid contribution -0.051 0.037 -0.251 0.259 sum -19.416 26.140 16.850 36.664 Atomic orbital electron populations 1.21902 0.89412 1.02895 1.04181 1.24367 1.00682 0.99042 0.91894 1.21903 1.01030 0.91282 1.04157 1.22702 0.97311 0.89413 0.96795 1.69921 1.28512 1.24303 1.13979 1.23577 0.91499 0.90191 0.90000 1.45989 1.52844 1.25392 1.06317 1.22249 0.96326 1.03944 0.78238 1.22318 0.91956 0.93564 0.94822 1.47200 1.53970 1.27721 1.07525 1.16023 0.79806 0.81106 0.82623 1.90878 1.49914 1.50954 1.59831 1.45296 1.59995 1.28418 1.05128 1.20899 0.95300 0.85659 0.94189 1.19637 0.97702 0.96333 0.91189 1.21241 1.35177 1.08513 0.92703 0.95368 1.26107 0.95620 0.97527 1.00244 1.70084 1.45270 1.30062 1.13690 0.85528 0.80145 0.78576 0.77557 1.19080 1.21431 1.15604 1.21870 0.96239 1.03079 0.79133 1.21948 0.90730 0.91831 0.95310 1.86577 1.63455 1.30550 1.18261 0.88817 0.91072 0.92560 0.92448 0.91086 0.88860 0.88552 0.88447 0.89972 0.87530 0.89281 0.87459 0.75382 0.94134 0.93941 0.94290 0.94631 0.92389 0.90483 0.89063 0.87510 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.99 8.45 71.99 0.61 -0.38 16 2 C -0.05 -0.53 1.21 -10.57 -0.01 -0.54 16 3 C -0.12 -0.97 8.43 71.98 0.61 -0.37 16 4 C 0.07 0.96 6.95 86.96 0.60 1.56 16 5 N -0.64 -12.46 9.86 -350.58 -3.46 -15.92 16 6 C 0.43 8.20 7.97 180.02 1.43 9.64 16 7 N -0.58 -10.47 3.02 -702.41 -2.12 -12.59 16 8 C 0.12 1.72 6.66 86.56 0.58 2.29 16 9 C 0.10 1.53 6.61 86.56 0.57 2.11 16 10 N -0.63 -14.67 2.95 -835.12 -2.46 -17.13 16 11 C 0.70 22.99 8.29 179.06 1.49 24.47 16 12 O -0.63 -26.69 15.78 -4.00 -0.06 -26.75 16 13 N -0.73 -23.00 5.47 -478.53 -2.62 -25.61 16 14 C 0.16 6.69 5.62 86.38 0.49 7.17 16 15 C -0.01 -0.47 4.16 29.85 0.12 -0.35 16 16 C -0.54 -30.51 9.66 25.60 0.25 -30.26 16 17 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 18 C 0.00 0.11 5.47 84.65 0.46 0.58 16 19 N -0.95 -59.15 13.96 21.45 0.30 -58.85 16 20 Si 0.96 41.67 27.47 68.60 1.88 43.56 16 21 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 22 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 23 H -0.23 -8.83 6.54 99.48 0.65 -8.18 16 24 C 0.12 2.56 6.58 86.42 0.57 3.13 16 25 C 0.13 2.37 6.65 86.42 0.58 2.95 16 26 S -0.22 -3.44 20.46 -56.49 -1.16 -4.60 16 27 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.51 8.14 -2.38 -0.02 0.50 16 32 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.10 1.15 7.65 -2.39 -0.02 1.13 16 34 H 0.10 1.15 7.65 -2.39 -0.02 1.13 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.11 1.35 6.46 -2.39 -0.02 1.34 16 37 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.11 1.41 5.55 -2.39 -0.01 1.40 16 39 H 0.41 9.84 5.92 -92.71 -0.55 9.29 16 40 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 42 H 0.04 1.58 7.20 -2.39 -0.02 1.57 16 43 H 0.04 1.44 7.57 -2.39 -0.02 1.42 16 44 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 45 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 46 H 0.09 2.27 7.02 -2.39 -0.02 2.25 16 47 H 0.11 1.98 7.20 -2.39 -0.02 1.96 16 48 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -75.58 388.63 -1.00 -76.58 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.35 Total: 19.32 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: 8.34 Total: 22.00 kcal Atomic # 7 Polarization: -119.75 SS G_CDS: -10.35 Total: -130.11 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.06 Total: -26.75 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 1.88 Total: 43.56 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -1.16 Total: -4.60 kcal Total: -75.58 -1.00 -76.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784452936.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.199 kcal (2) G-P(sol) polarization free energy of solvation -75.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds