Wall clock time and date at job start Tue Mar 31 2020 23:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32153 * 119.99893 * 2 1 4 4 C 1.32119 * 120.00092 * 180.27996 * 3 2 1 5 5 C 1.38393 * 119.99855 * 359.72996 * 4 3 2 6 6 N 1.32129 * 119.99344 * 0.02562 * 5 4 3 7 7 C 1.32147 * 120.00189 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99834 * 179.97438 * 7 6 5 9 9 H 1.08997 * 109.47044 * 192.39452 * 8 7 6 10 10 C 1.52995 * 109.47096 * 72.39456 * 8 7 6 11 11 N 1.46503 * 109.46972 * 312.39429 * 8 7 6 12 12 C 1.34782 * 119.99478 * 205.00089 * 11 8 7 13 13 O 1.21584 * 120.00092 * 359.97438 * 12 11 8 14 14 N 1.34778 * 119.99365 * 180.02562 * 12 11 8 15 15 C 1.46500 * 119.99745 * 179.97438 * 14 12 11 16 16 C 1.50694 * 109.47210 * 180.02562 * 15 14 12 17 17 C 1.38637 * 119.74862 * 269.72860 * 16 15 14 18 18 C 1.37616 * 120.24783 * 179.71861 * 17 16 15 19 19 C 1.40714 * 119.74426 * 0.57544 * 18 17 16 20 20 C 1.41400 * 120.24385 * 179.68058 * 19 18 17 21 21 H 1.08001 * 120.00206 * 154.17094 * 20 19 18 22 22 C 1.39951 * 119.99755 * 334.17302 * 20 19 18 23 23 N 1.30819 * 120.00129 * 339.98647 * 22 20 19 24 24 Si 1.86798 * 119.99627 * 159.98877 * 22 20 19 25 25 H 1.48503 * 109.47160 * 94.94638 * 24 22 20 26 26 H 1.48501 * 109.46990 * 214.94108 * 24 22 20 27 27 H 1.48494 * 109.47255 * 334.94738 * 24 22 20 28 28 C 1.40714 * 119.51231 * 359.70005 * 19 18 17 29 29 C 1.37617 * 119.74432 * 359.97438 * 28 19 18 30 30 H 1.09004 * 109.47217 * 264.78144 * 1 2 3 31 31 H 1.08992 * 109.47346 * 24.78434 * 1 2 3 32 32 H 1.09004 * 109.47105 * 144.78462 * 1 2 3 33 33 H 1.07997 * 120.00185 * 179.71448 * 4 3 2 34 34 H 1.07994 * 120.00476 * 179.97438 * 5 4 3 35 35 H 1.08996 * 109.47513 * 180.02562 * 10 8 7 36 36 H 1.09007 * 109.47229 * 299.99919 * 10 8 7 37 37 H 1.09002 * 109.47220 * 59.99889 * 10 8 7 38 38 H 0.96998 * 120.00080 * 24.99981 * 11 8 7 39 39 H 0.96998 * 120.00193 * 359.97438 * 14 12 11 40 40 H 1.09001 * 109.46952 * 59.99541 * 15 14 12 41 41 H 1.09001 * 109.47294 * 300.00213 * 15 14 12 42 42 H 1.08006 * 119.87203 * 359.97438 * 17 16 15 43 43 H 1.08000 * 120.12572 * 180.27284 * 18 17 16 44 44 H 0.96998 * 120.00178 * 179.97438 * 23 22 20 45 45 H 1.08000 * 120.12571 * 179.97438 * 28 19 18 46 46 H 1.07997 * 119.87291 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4890 1.1445 -0.0056 5 6 4.1810 -0.0540 -0.0058 6 7 3.5202 -1.1982 -0.0009 7 6 2.1987 -1.1981 0.0047 8 6 1.4452 -2.5032 0.0097 9 1 0.3934 -2.3163 -0.2067 10 6 1.5738 -3.1611 1.3849 11 7 2.0032 -3.3931 -1.0116 12 6 1.2394 -4.3653 -1.5484 13 8 0.0875 -4.5039 -1.1848 14 7 1.7529 -5.1843 -2.4875 15 6 0.9229 -6.2414 -3.0707 16 6 1.7283 -7.0094 -4.0868 17 6 1.7292 -6.6040 -5.4126 18 6 2.4656 -7.2943 -6.3480 19 6 3.2097 -8.4227 -5.9566 20 6 3.9646 -9.1438 -6.9102 21 1 4.8282 -9.7120 -6.5976 22 6 3.5927 -9.1212 -8.2592 23 7 2.3744 -8.7844 -8.5963 24 14 4.8361 -9.5719 -9.5784 25 1 4.6892 -11.0079 -9.9273 26 1 4.5983 -8.7422 -10.7869 27 1 6.2091 -9.3240 -9.0700 28 6 3.1967 -8.8284 -4.6093 29 6 2.4585 -8.1189 -3.6897 30 1 -0.3634 -0.0935 1.0234 31 1 -0.3633 0.9329 -0.4308 32 1 -0.3633 -0.8396 -0.5926 33 1 4.0289 2.0798 -0.0103 34 1 5.2609 -0.0540 -0.0108 35 1 1.0292 -4.1052 1.3885 36 1 2.6257 -3.3481 1.6013 37 1 1.1587 -2.4989 2.1448 38 1 2.9223 -3.2827 -1.3014 39 1 2.6720 -5.0739 -2.7773 40 1 0.0549 -5.7954 -3.5562 41 1 0.5910 -6.9185 -2.2836 42 1 1.1532 -5.7407 -5.7116 43 1 2.4684 -6.9742 -7.3795 44 1 2.1167 -8.7684 -9.5313 45 1 3.7638 -9.6931 -4.2980 46 1 2.4466 -8.4286 -2.6552 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873050066.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:44 Heat of formation + Delta-G solvation = 27.345956 kcal Electronic energy + Delta-G solvation = -27755.554886 eV Core-core repulsion = 23837.547014 eV Total energy + Delta-G solvation = -3918.007873 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.68664 -39.74519 -37.76264 -36.23867 -34.85754 -34.57276 -33.45138 -32.85211 -30.70475 -29.70000 -29.33914 -28.41832 -26.74549 -25.50595 -23.77534 -23.24624 -21.94924 -21.07934 -20.54000 -20.08797 -18.60752 -17.99623 -17.38337 -16.93756 -16.30849 -15.61293 -15.51708 -15.37090 -15.16160 -14.55252 -14.35930 -14.08993 -13.83056 -13.78698 -13.32820 -13.28993 -13.22730 -12.98092 -12.73345 -12.55060 -12.26021 -12.04725 -11.97169 -11.92152 -11.59487 -11.41204 -11.27598 -11.20617 -11.09948 -10.62151 -10.55909 -10.02939 -9.68874 -9.52587 -9.49817 -9.48094 -9.21101 -9.10217 -8.48263 -7.56762 -7.45658 -6.88762 -4.45569 0.33441 0.73640 2.50100 2.89523 2.98123 3.01940 3.06302 3.16778 3.31777 3.43124 3.58862 3.74977 3.85537 4.07243 4.24375 4.42994 4.67951 4.70236 4.81028 4.92508 5.04580 5.06639 5.21288 5.32857 5.46752 5.59162 5.61413 5.70105 5.82620 5.93534 5.96139 6.09272 6.25318 6.31856 6.36698 6.48569 6.86443 6.88077 6.91861 6.98314 7.15825 7.19724 7.25715 7.39183 7.51507 7.74344 7.95174 8.01237 8.19322 8.30162 8.53209 8.78469 8.84312 8.86632 10.06930 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017259 B = 0.001966 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.989984 B =14241.545143 C =14936.604981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.095 3.905 3 N -0.438 5.438 4 C 0.053 3.947 5 C 0.045 3.955 6 N -0.425 5.425 7 C 0.073 3.927 8 C 0.215 3.785 9 H 0.111 0.889 10 C -0.158 4.158 11 N -0.742 5.742 12 C 0.701 3.299 13 O -0.601 6.601 14 N -0.733 5.733 15 C 0.203 3.797 16 C -0.244 4.244 17 C -0.079 4.079 18 C -0.170 4.170 19 C 0.119 3.881 20 C -0.462 4.462 21 H 0.079 0.921 22 C 0.078 3.922 23 N -0.785 5.785 24 Si 0.906 3.094 25 H -0.270 1.270 26 H -0.275 1.275 27 H -0.260 1.260 28 C -0.230 4.230 29 C -0.068 4.068 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.171 0.829 34 H 0.172 0.828 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.400 0.600 39 H 0.396 0.604 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.088 0.912 43 H 0.113 0.887 44 H 0.282 0.718 45 H 0.093 0.907 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.512 16.877 14.389 22.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.046 4.046 3 N -0.153 5.153 4 C -0.107 4.107 5 C -0.115 4.115 6 N -0.140 5.140 7 C -0.069 4.069 8 C 0.108 3.892 9 H 0.128 0.872 10 C -0.217 4.217 11 N -0.399 5.399 12 C 0.401 3.599 13 O -0.480 6.480 14 N -0.387 5.387 15 C 0.081 3.919 16 C -0.246 4.246 17 C -0.098 4.098 18 C -0.190 4.190 19 C 0.116 3.884 20 C -0.490 4.490 21 H 0.098 0.902 22 C -0.142 4.142 23 N -0.409 5.409 24 Si 0.730 3.270 25 H -0.195 1.195 26 H -0.199 1.199 27 H -0.183 1.183 28 C -0.249 4.249 29 C -0.087 4.087 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.188 0.812 34 H 0.189 0.811 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.235 0.765 39 H 0.230 0.770 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.131 0.869 44 H 0.093 0.907 45 H 0.111 0.889 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.254 16.733 14.496 22.141 hybrid contribution 1.629 -0.026 -0.991 1.907 sum 1.883 16.707 13.505 21.565 Atomic orbital electron populations 1.20879 0.87483 1.04637 1.03901 1.22098 0.98604 0.88684 0.95214 1.68355 1.09029 1.28875 1.09083 1.23815 0.90777 1.00023 0.96104 1.23788 1.02020 0.88611 0.97061 1.68166 1.07938 1.30084 1.07803 1.22181 0.90923 0.96223 0.97527 1.19614 0.97085 0.83397 0.89065 0.87163 1.22163 1.03001 1.01693 0.94807 1.45129 1.16130 1.34753 1.43872 1.16065 0.84663 0.79463 0.79727 1.90878 1.16780 1.74377 1.65962 1.45727 1.16702 1.34454 1.41791 1.19803 0.91582 0.86681 0.93841 1.18988 1.09882 1.02082 0.93661 1.20550 0.98380 0.98171 0.92716 1.21213 1.02326 0.96779 0.98658 1.17655 0.89313 0.89977 0.91443 1.19630 1.11459 1.26585 0.91373 0.90249 1.25942 0.95149 0.92962 1.00111 1.69834 1.16915 1.34324 1.19862 0.86336 0.81818 0.79150 0.79698 1.19485 1.19949 1.18330 1.20974 1.07137 1.02266 0.94538 1.20421 0.96398 0.94842 0.97042 0.89471 0.89815 0.89325 0.81208 0.81090 0.90694 0.91806 0.91944 0.76500 0.77025 0.92529 0.92559 0.89402 0.86913 0.90670 0.88891 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 9.52 36.01 0.34 -0.49 16 2 C 0.09 0.92 6.79 -82.41 -0.56 0.36 16 3 N -0.44 -4.27 10.42 -9.29 -0.10 -4.37 16 4 C 0.05 0.39 11.23 -17.37 -0.20 0.20 16 5 C 0.05 0.34 11.23 -17.37 -0.19 0.14 16 6 N -0.43 -4.24 9.83 -9.29 -0.09 -4.34 16 7 C 0.07 0.74 5.68 -82.42 -0.47 0.28 16 8 C 0.22 2.36 2.69 -69.08 -0.19 2.17 16 9 H 0.11 1.23 5.00 -51.93 -0.26 0.98 16 10 C -0.16 -1.60 9.47 37.15 0.35 -1.25 16 11 N -0.74 -9.28 5.06 -59.81 -0.30 -9.59 16 12 C 0.70 11.09 8.53 -86.91 -0.74 10.35 16 13 O -0.60 -11.32 16.01 5.29 0.08 -11.24 16 14 N -0.73 -11.67 5.55 -66.41 -0.37 -12.03 16 15 C 0.20 3.69 5.79 -5.20 -0.03 3.66 16 16 C -0.24 -5.03 5.27 -104.33 -0.55 -5.58 16 17 C -0.08 -1.76 9.67 -39.66 -0.38 -2.14 16 18 C -0.17 -4.24 8.69 -38.87 -0.34 -4.58 16 19 C 0.12 3.05 5.55 -106.82 -0.59 2.46 16 20 C -0.46 -11.84 9.03 -37.74 -0.34 -12.18 16 21 H 0.08 1.96 7.92 -52.49 -0.42 1.54 16 22 C 0.08 1.89 5.08 -17.34 -0.09 1.80 16 23 N -0.79 -19.76 11.19 55.55 0.62 -19.14 16 24 Si 0.91 18.04 29.60 -169.99 -5.03 13.00 16 25 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 26 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 27 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 28 C -0.23 -5.41 9.80 -38.87 -0.38 -5.79 16 29 C -0.07 -1.45 9.67 -39.66 -0.38 -1.84 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.68 6.22 -51.93 -0.32 0.35 16 33 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 34 H 0.17 0.74 8.06 -52.49 -0.42 0.31 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.40 4.60 8.15 -40.82 -0.33 4.27 16 39 H 0.40 5.82 8.48 -40.82 -0.35 5.47 16 40 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 41 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 42 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 43 H 0.11 2.91 6.35 -52.49 -0.33 2.58 16 44 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 45 H 0.09 2.08 8.06 -52.49 -0.42 1.65 16 46 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 390.22 15.07 5.88 5.88 Total: -1.00 -30.15 390.22 -10.25 -40.40 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -6.21 Total: 13.86 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -4.74 Total: -12.44 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.24 Total: -49.46 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.15 -10.25 -40.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873050066.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.748 kcal (2) G-P(sol) polarization free energy of solvation -30.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds