Wall clock time and date at job start Tue Mar 31 2020 23:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32153 * 119.99893 * 2 1 4 4 C 1.32119 * 120.00092 * 180.27996 * 3 2 1 5 5 C 1.38393 * 119.99855 * 359.72996 * 4 3 2 6 6 N 1.32129 * 119.99344 * 0.02562 * 5 4 3 7 7 C 1.32147 * 120.00189 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99834 * 179.97438 * 7 6 5 9 9 H 1.08997 * 109.47044 * 192.39452 * 8 7 6 10 10 C 1.52995 * 109.47096 * 72.39456 * 8 7 6 11 11 N 1.46503 * 109.46972 * 312.39429 * 8 7 6 12 12 C 1.34782 * 119.99478 * 205.00089 * 11 8 7 13 13 O 1.21584 * 120.00092 * 359.97438 * 12 11 8 14 14 N 1.34778 * 119.99365 * 180.02562 * 12 11 8 15 15 C 1.46500 * 119.99745 * 179.97438 * 14 12 11 16 16 C 1.50694 * 109.47210 * 180.02562 * 15 14 12 17 17 C 1.38637 * 119.74862 * 269.72860 * 16 15 14 18 18 C 1.37616 * 120.24783 * 179.71861 * 17 16 15 19 19 C 1.40714 * 119.74426 * 0.57544 * 18 17 16 20 20 C 1.41400 * 120.24385 * 179.68058 * 19 18 17 21 21 H 1.08001 * 120.00206 * 154.17094 * 20 19 18 22 22 C 1.39951 * 119.99755 * 334.17302 * 20 19 18 23 23 N 1.30819 * 120.00129 * 339.98647 * 22 20 19 24 24 Si 1.86798 * 119.99627 * 159.98877 * 22 20 19 25 25 H 1.48503 * 109.47160 * 94.94638 * 24 22 20 26 26 H 1.48501 * 109.46990 * 214.94108 * 24 22 20 27 27 H 1.48494 * 109.47255 * 334.94738 * 24 22 20 28 28 C 1.40714 * 119.51231 * 359.70005 * 19 18 17 29 29 C 1.37617 * 119.74432 * 359.97438 * 28 19 18 30 30 H 1.09004 * 109.47217 * 264.78144 * 1 2 3 31 31 H 1.08992 * 109.47346 * 24.78434 * 1 2 3 32 32 H 1.09004 * 109.47105 * 144.78462 * 1 2 3 33 33 H 1.07997 * 120.00185 * 179.71448 * 4 3 2 34 34 H 1.07994 * 120.00476 * 179.97438 * 5 4 3 35 35 H 1.08996 * 109.47513 * 180.02562 * 10 8 7 36 36 H 1.09007 * 109.47229 * 299.99919 * 10 8 7 37 37 H 1.09002 * 109.47220 * 59.99889 * 10 8 7 38 38 H 0.96998 * 120.00080 * 24.99981 * 11 8 7 39 39 H 0.96998 * 120.00193 * 359.97438 * 14 12 11 40 40 H 1.09001 * 109.46952 * 59.99541 * 15 14 12 41 41 H 1.09001 * 109.47294 * 300.00213 * 15 14 12 42 42 H 1.08006 * 119.87203 * 359.97438 * 17 16 15 43 43 H 1.08000 * 120.12572 * 180.27284 * 18 17 16 44 44 H 0.96998 * 120.00178 * 179.97438 * 23 22 20 45 45 H 1.08000 * 120.12571 * 179.97438 * 28 19 18 46 46 H 1.07997 * 119.87291 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4890 1.1445 -0.0056 5 6 4.1810 -0.0540 -0.0058 6 7 3.5202 -1.1982 -0.0009 7 6 2.1987 -1.1981 0.0047 8 6 1.4452 -2.5032 0.0097 9 1 0.3934 -2.3163 -0.2067 10 6 1.5738 -3.1611 1.3849 11 7 2.0032 -3.3931 -1.0116 12 6 1.2394 -4.3653 -1.5484 13 8 0.0875 -4.5039 -1.1848 14 7 1.7529 -5.1843 -2.4875 15 6 0.9229 -6.2414 -3.0707 16 6 1.7283 -7.0094 -4.0868 17 6 1.7292 -6.6040 -5.4126 18 6 2.4656 -7.2943 -6.3480 19 6 3.2097 -8.4227 -5.9566 20 6 3.9646 -9.1438 -6.9102 21 1 4.8282 -9.7120 -6.5976 22 6 3.5927 -9.1212 -8.2592 23 7 2.3744 -8.7844 -8.5963 24 14 4.8361 -9.5719 -9.5784 25 1 4.6892 -11.0079 -9.9273 26 1 4.5983 -8.7422 -10.7869 27 1 6.2091 -9.3240 -9.0700 28 6 3.1967 -8.8284 -4.6093 29 6 2.4585 -8.1189 -3.6897 30 1 -0.3634 -0.0935 1.0234 31 1 -0.3633 0.9329 -0.4308 32 1 -0.3633 -0.8396 -0.5926 33 1 4.0289 2.0798 -0.0103 34 1 5.2609 -0.0540 -0.0108 35 1 1.0292 -4.1052 1.3885 36 1 2.6257 -3.3481 1.6013 37 1 1.1587 -2.4989 2.1448 38 1 2.9223 -3.2827 -1.3014 39 1 2.6720 -5.0739 -2.7773 40 1 0.0549 -5.7954 -3.5562 41 1 0.5910 -6.9185 -2.2836 42 1 1.1532 -5.7407 -5.7116 43 1 2.4684 -6.9742 -7.3795 44 1 2.1167 -8.7684 -9.5313 45 1 3.7638 -9.6931 -4.2980 46 1 2.4466 -8.4286 -2.6552 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873050066.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:43 Heat of formation + Delta-G solvation = 8.318186 kcal Electronic energy + Delta-G solvation = -27756.379992 eV Core-core repulsion = 23837.547014 eV Total energy + Delta-G solvation = -3918.832979 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.36153 -40.98200 -39.49773 -37.25188 -36.17298 -35.47742 -35.05846 -33.76876 -32.12557 -31.21100 -30.82237 -29.01505 -28.38200 -26.28423 -25.34894 -23.93034 -22.95247 -22.85418 -21.80367 -21.67455 -19.73577 -19.23219 -18.77621 -17.83416 -17.19142 -17.03227 -16.57595 -16.41057 -16.20860 -15.97541 -15.61261 -15.49651 -15.30941 -14.99684 -14.62559 -14.24411 -14.15193 -13.84111 -13.82683 -13.76069 -13.47245 -13.38551 -13.29131 -13.07749 -12.93845 -12.74222 -12.60131 -12.38848 -12.17108 -12.14040 -12.03236 -11.49400 -11.37245 -11.28729 -11.00826 -10.43850 -10.13882 -10.05156 -9.72039 -9.39343 -9.29207 -8.69200 -6.36309 -0.29717 0.08614 0.82769 1.13245 1.38153 1.43857 1.53379 1.85689 2.17294 2.19681 2.63587 2.70839 2.90786 3.14858 3.35002 3.52710 3.58211 3.75069 4.04971 4.16512 4.20905 4.27058 4.33870 4.34097 4.42940 4.52696 4.62500 4.68545 4.70442 4.72436 4.80496 4.89625 5.04030 5.07523 5.15170 5.17190 5.33868 5.41681 5.43140 5.46706 5.56697 5.68798 5.87910 6.05042 6.07962 6.20271 6.26876 6.36219 6.67217 6.75802 6.91359 6.99950 7.10116 7.59173 8.29174 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017259 B = 0.001966 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.989984 B =14241.545143 C =14936.604981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.084 3.916 3 N -0.460 5.460 4 C 0.058 3.942 5 C 0.045 3.955 6 N -0.444 5.444 7 C 0.058 3.942 8 C 0.214 3.786 9 H 0.107 0.893 10 C -0.150 4.150 11 N -0.729 5.729 12 C 0.702 3.298 13 O -0.630 6.630 14 N -0.729 5.729 15 C 0.214 3.786 16 C -0.226 4.226 17 C -0.080 4.080 18 C -0.192 4.192 19 C 0.088 3.912 20 C -0.499 4.499 21 H 0.077 0.923 22 C 0.037 3.963 23 N -0.820 5.820 24 Si 0.979 3.021 25 H -0.263 1.263 26 H -0.266 1.266 27 H -0.258 1.258 28 C -0.243 4.243 29 C -0.066 4.066 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.205 0.795 34 H 0.204 0.796 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.407 0.593 39 H 0.404 0.596 40 H 0.054 0.946 41 H 0.059 0.941 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.289 0.711 45 H 0.098 0.902 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.525 18.356 15.391 24.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.056 4.056 3 N -0.176 5.176 4 C -0.102 4.102 5 C -0.116 4.116 6 N -0.159 5.159 7 C -0.082 4.082 8 C 0.108 3.892 9 H 0.124 0.876 10 C -0.209 4.209 11 N -0.385 5.385 12 C 0.402 3.598 13 O -0.512 6.512 14 N -0.384 5.384 15 C 0.091 3.909 16 C -0.227 4.227 17 C -0.099 4.099 18 C -0.212 4.212 19 C 0.086 3.914 20 C -0.528 4.528 21 H 0.095 0.905 22 C -0.179 4.179 23 N -0.445 5.445 24 Si 0.800 3.200 25 H -0.188 1.188 26 H -0.191 1.191 27 H -0.182 1.182 28 C -0.263 4.263 29 C -0.085 4.085 30 H 0.120 0.880 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.222 0.778 34 H 0.221 0.779 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.242 0.758 39 H 0.239 0.761 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.122 0.878 43 H 0.113 0.887 44 H 0.100 0.900 45 H 0.117 0.883 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.271 18.228 15.523 23.976 hybrid contribution 1.309 -0.335 -1.138 1.766 sum 2.579 17.893 14.385 23.103 Atomic orbital electron populations 1.20907 0.86579 1.04518 1.04745 1.22308 0.99426 0.88611 0.95239 1.68413 1.10309 1.28880 1.09976 1.24439 0.90192 1.01515 0.94068 1.24362 1.03480 0.87931 0.95808 1.68136 1.07904 1.31520 1.08365 1.21961 0.91242 0.95722 0.99265 1.19692 0.97056 0.83712 0.88764 0.87585 1.22078 1.02673 1.01178 0.94954 1.45044 1.16065 1.33825 1.43567 1.16077 0.84399 0.79774 0.79516 1.90861 1.18196 1.75270 1.66898 1.45424 1.16805 1.34175 1.41962 1.19567 0.91171 0.87000 0.93203 1.19196 1.08487 1.01502 0.93542 1.20743 0.97823 0.98327 0.93037 1.21166 1.03937 0.97599 0.98468 1.17990 0.90193 0.90627 0.92611 1.19867 1.12174 1.28065 0.92726 0.90455 1.26764 0.96777 0.92501 1.01815 1.69879 1.18500 1.35412 1.20730 0.85238 0.78990 0.79081 0.76718 1.18750 1.19078 1.18150 1.21167 1.07850 1.02925 0.94327 1.20695 0.95358 0.94423 0.98006 0.88040 0.89530 0.89836 0.77805 0.77923 0.92381 0.91995 0.90099 0.75754 0.76145 0.92816 0.92265 0.87810 0.88677 0.89998 0.88350 0.86594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 9.52 71.24 0.68 -0.87 16 2 C 0.08 1.52 6.79 42.54 0.29 1.81 16 3 N -0.46 -8.14 10.42 -183.29 -1.91 -10.05 16 4 C 0.06 0.70 11.23 84.69 0.95 1.65 16 5 C 0.04 0.55 11.23 84.68 0.95 1.50 16 6 N -0.44 -8.06 9.83 -183.29 -1.80 -9.87 16 7 C 0.06 1.12 5.68 42.54 0.24 1.36 16 8 C 0.21 4.50 2.69 44.24 0.12 4.62 16 9 H 0.11 2.33 5.00 -2.39 -0.01 2.32 16 10 C -0.15 -2.90 9.47 71.98 0.68 -2.22 16 11 N -0.73 -17.47 5.06 -461.40 -2.34 -19.81 16 12 C 0.70 21.48 8.53 179.05 1.53 23.01 16 13 O -0.63 -23.30 16.01 -3.98 -0.06 -23.37 16 14 N -0.73 -22.14 5.55 -482.30 -2.68 -24.82 16 15 C 0.21 7.43 5.79 85.63 0.50 7.93 16 16 C -0.23 -9.04 5.27 -19.68 -0.10 -9.15 16 17 C -0.08 -3.56 9.67 22.22 0.21 -3.35 16 18 C -0.19 -9.81 8.69 22.73 0.20 -9.62 16 19 C 0.09 4.65 5.55 -21.29 -0.12 4.53 16 20 C -0.50 -26.39 9.03 23.46 0.21 -26.17 16 21 H 0.08 3.94 7.92 -2.91 -0.02 3.92 16 22 C 0.04 1.85 5.08 85.26 0.43 2.29 16 23 N -0.82 -42.35 11.19 21.83 0.24 -42.10 16 24 Si 0.98 37.37 29.60 68.60 2.03 39.40 16 25 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 26 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 27 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 28 C -0.24 -11.52 9.80 22.73 0.22 -11.30 16 29 C -0.07 -2.74 9.67 22.22 0.21 -2.53 16 30 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.25 6.22 -2.38 -0.01 1.23 16 33 H 0.21 0.85 8.06 -2.91 -0.02 0.83 16 34 H 0.20 1.02 8.06 -2.91 -0.02 1.00 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.41 8.81 8.15 -92.71 -0.76 8.05 16 39 H 0.40 11.19 8.48 -92.71 -0.79 10.40 16 40 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 41 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 42 H 0.10 4.19 8.06 -2.91 -0.02 4.17 16 43 H 0.10 5.12 6.35 -2.91 -0.02 5.10 16 44 H 0.29 13.48 8.30 -92.71 -0.77 12.71 16 45 H 0.10 4.43 8.06 -2.91 -0.02 4.41 16 46 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -66.10 390.22 0.18 -65.92 By element: Atomic # 1 Polarization: 41.73 SS G_CDS: -0.51 Total: 41.22 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 7.21 Total: -16.53 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -8.48 Total: -106.65 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.06 Total: -23.37 kcal Atomic # 14 Polarization: 37.37 SS G_CDS: 2.03 Total: 39.40 kcal Total: -66.10 0.18 -65.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873050066.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.236 kcal (2) G-P(sol) polarization free energy of solvation -66.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds