Wall clock time and date at job start Tue Mar 31 2020 23:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38395 * 120.45108 * 2 1 4 4 C 1.38792 * 118.49969 * 180.02562 * 3 2 1 5 5 C 1.38120 * 119.30737 * 0.02562 * 4 3 2 6 6 N 1.31902 * 120.84379 * 359.71857 * 5 4 3 7 7 C 1.32373 * 121.63778 * 0.57170 * 6 5 4 8 8 N 1.39415 * 119.69424 * 179.70929 * 7 6 5 9 9 C 1.34769 * 119.99974 * 359.72479 * 8 7 6 10 10 O 1.21283 * 120.00403 * 0.02562 * 9 8 7 11 11 C 1.50706 * 119.99889 * 180.02562 * 9 8 7 12 12 N 1.46901 * 109.47005 * 174.33035 * 11 9 8 13 13 C 1.46904 * 111.00169 * 287.76991 * 12 11 9 14 14 C 1.50692 * 109.47286 * 294.41892 * 13 12 11 15 15 H 1.08000 * 119.99818 * 5.33217 * 14 13 12 16 16 C 1.37876 * 119.99949 * 185.33120 * 14 13 12 17 17 N 1.31519 * 119.99675 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 120.00128 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47485 * 90.00039 * 18 16 14 20 20 H 1.48503 * 109.47253 * 210.00122 * 18 16 14 21 21 H 1.48507 * 109.47162 * 329.99869 * 18 16 14 22 22 C 1.46897 * 110.99755 * 163.81811 * 12 11 9 23 23 C 1.50701 * 109.47032 * 189.99880 * 22 12 11 24 24 C 1.38234 * 119.61634 * 95.02166 * 23 22 12 25 25 C 1.38634 * 119.15842 * 179.74355 * 24 23 22 26 26 C 1.38667 * 118.42075 * 0.47814 * 25 24 23 27 27 C 1.38190 * 119.16425 * 359.50250 * 26 25 24 28 28 N 1.31858 * 119.62058 * 274.99826 * 23 22 12 29 29 H 1.09001 * 109.47262 * 269.97580 * 1 2 3 30 30 H 1.09002 * 109.47304 * 29.98085 * 1 2 3 31 31 H 1.09004 * 109.47183 * 149.97568 * 1 2 3 32 32 H 1.08002 * 120.74941 * 0.04334 * 3 2 1 33 33 H 1.08002 * 120.34832 * 179.97438 * 4 3 2 34 34 H 1.07998 * 119.57441 * 180.02562 * 5 4 3 35 35 H 0.96995 * 119.99640 * 179.72601 * 8 7 6 36 36 H 1.09004 * 109.47046 * 54.33165 * 11 9 8 37 37 H 1.08992 * 109.47200 * 294.33196 * 11 9 8 38 38 H 1.09002 * 109.46486 * 54.41890 * 13 12 11 39 39 H 1.08999 * 109.47098 * 174.41572 * 13 12 11 40 40 H 0.97005 * 119.99436 * 179.97438 * 17 16 14 41 41 H 1.09006 * 109.47253 * 70.00297 * 22 12 11 42 42 H 1.09002 * 109.47546 * 309.99837 * 22 12 11 43 43 H 1.07996 * 120.41913 * 359.95869 * 24 23 22 44 44 H 1.08004 * 120.78533 * 180.23006 * 25 24 23 45 45 H 1.08005 * 120.41830 * 179.78121 * 26 25 24 46 46 H 1.07999 * 119.61652 * 180.25520 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2083 1.1931 0.0000 4 6 3.5954 1.1458 -0.0005 5 6 4.2301 -0.0809 -0.0016 6 7 3.5351 -1.2020 0.0035 7 6 2.2114 -1.1983 -0.0015 8 7 1.5173 -2.4074 -0.0020 9 6 2.1941 -3.5728 -0.0030 10 8 3.4070 -3.5698 -0.0030 11 6 1.4439 -4.8799 -0.0041 12 7 2.3955 -5.9905 -0.1419 13 6 2.9414 -6.0501 -1.5044 14 6 1.8380 -6.3881 -2.4734 15 1 0.8176 -6.4584 -2.1266 16 6 2.1311 -6.6077 -3.8026 17 7 1.1681 -6.9032 -4.6482 18 14 3.8961 -6.4867 -4.4022 19 1 4.5474 -7.8170 -4.2957 20 1 3.9082 -6.0417 -5.8190 21 1 4.6359 -5.5052 -3.5688 22 6 1.7721 -7.2671 0.2317 23 6 2.8300 -8.3371 0.3158 24 6 3.4038 -8.6359 1.5374 25 6 4.3723 -9.6255 1.6048 26 6 4.7362 -10.2736 0.4341 27 6 4.1184 -9.9212 -0.7507 28 7 3.1973 -8.9777 -0.7766 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6880 2.1395 0.0007 33 1 4.1725 2.0587 -0.0010 34 1 5.3093 -0.1227 -0.0016 35 1 0.5474 -2.4098 -0.0016 36 1 0.7433 -4.8959 -0.8390 37 1 0.8959 -4.9850 0.9321 38 1 3.3712 -5.0832 -1.7661 39 1 3.7149 -6.8166 -1.5527 40 1 1.3743 -7.0573 -5.5835 41 1 1.0336 -7.5448 -0.5204 42 1 1.2829 -7.1630 1.2002 43 1 3.0990 -8.1075 2.4286 44 1 4.8352 -9.8828 2.5461 45 1 5.4898 -11.0472 0.4489 46 1 4.3933 -10.4241 -1.6661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878168394.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:58 Heat of formation + Delta-G solvation = 73.276234 kcal Electronic energy + Delta-G solvation = -29231.534544 eV Core-core repulsion = 25315.518358 eV Total energy + Delta-G solvation = -3916.016186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.71182 -39.77212 -38.79281 -36.38189 -34.74781 -33.43245 -32.34808 -32.02010 -31.39687 -30.68898 -28.25737 -27.44142 -26.93963 -24.56612 -23.35286 -23.00230 -22.16145 -21.89201 -20.43131 -19.55416 -18.02531 -17.23511 -16.60317 -16.30524 -15.74385 -15.58555 -15.50678 -15.29023 -15.03478 -14.68785 -14.45198 -14.09967 -13.98072 -13.64372 -13.37786 -13.01434 -12.94585 -12.92413 -12.72993 -12.65294 -12.38011 -12.26179 -11.68092 -11.55397 -11.34255 -11.13970 -11.04869 -10.72628 -10.52913 -10.24632 -9.84309 -9.73750 -9.57689 -9.48361 -9.38025 -8.80567 -8.68642 -8.58866 -8.41528 -8.04907 -7.23342 -5.98170 -3.94217 1.14973 1.37536 1.53573 1.73519 3.03906 3.18824 3.41549 3.46653 3.57377 4.00148 4.20115 4.47845 4.56098 4.70010 4.78369 4.85681 4.96767 5.03945 5.11054 5.18899 5.25577 5.34175 5.37740 5.39928 5.42813 5.43982 5.54792 5.62155 5.67113 5.86570 5.87455 6.02003 6.02591 6.11460 6.17699 6.19298 6.40095 6.41630 6.52984 6.70238 6.86076 7.00518 7.13642 7.34642 7.39926 7.62259 7.98224 8.03160 8.25533 8.51731 8.63466 8.71432 8.99376 9.68336 11.14851 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011240 B = 0.003472 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.421287 B = 8062.405489 C = 9141.232716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.184 4.184 3 C -0.052 4.052 4 C -0.214 4.214 5 C 0.128 3.872 6 N -0.473 5.473 7 C 0.374 3.626 8 N -0.667 5.667 9 C 0.507 3.493 10 O -0.447 6.447 11 C 0.042 3.958 12 N -0.511 5.511 13 C 0.155 3.845 14 C -0.534 4.534 15 H 0.072 0.928 16 C 0.082 3.918 17 N -0.903 5.903 18 Si 0.871 3.129 19 H -0.275 1.275 20 H -0.291 1.291 21 H -0.266 1.266 22 C 0.103 3.897 23 C 0.156 3.844 24 C -0.162 4.162 25 C -0.085 4.085 26 C -0.187 4.187 27 C 0.095 3.905 28 N -0.444 5.444 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.155 0.845 35 H 0.413 0.587 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.032 0.968 39 H 0.036 0.964 40 H 0.260 0.740 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.126 0.874 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.467 8.850 13.860 16.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.189 4.189 3 C -0.078 4.078 4 C -0.235 4.235 5 C -0.030 4.030 6 N -0.187 5.187 7 C 0.142 3.858 8 N -0.316 5.316 9 C 0.292 3.708 10 O -0.313 6.313 11 C -0.090 4.090 12 N -0.235 5.235 13 C 0.029 3.971 14 C -0.572 4.572 15 H 0.090 0.910 16 C -0.120 4.120 17 N -0.542 5.542 18 Si 0.699 3.301 19 H -0.200 1.200 20 H -0.218 1.218 21 H -0.190 1.190 22 C -0.025 4.025 23 C 0.018 3.982 24 C -0.183 4.183 25 C -0.111 4.111 26 C -0.208 4.208 27 C -0.062 4.062 28 N -0.153 5.153 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.172 0.828 35 H 0.251 0.749 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.147 0.853 44 H 0.144 0.856 45 H 0.144 0.856 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.826 8.138 13.207 15.535 hybrid contribution -0.113 0.446 -0.377 0.595 sum 0.713 8.584 12.831 15.454 Atomic orbital electron populations 1.20652 0.90273 1.03154 1.02378 1.20276 0.97202 0.92454 1.09010 1.21191 0.93989 0.97185 0.95387 1.21977 0.95158 0.99459 1.06941 1.22675 1.00193 0.86893 0.93287 1.67757 1.05583 1.30712 1.14615 1.18405 0.88807 0.85303 0.93247 1.43948 1.10483 1.03835 1.73310 1.21103 0.88957 0.84538 0.76202 1.90776 1.13276 1.86034 1.41164 1.21812 0.95043 0.89338 1.02792 1.62208 1.31622 1.00196 1.29479 1.20273 0.95988 0.97597 0.83249 1.21441 0.94696 1.48084 0.93017 0.91035 1.24746 0.96487 0.94001 0.96767 1.69918 1.31994 1.48539 1.03708 0.86903 0.86494 0.79102 0.77613 1.20033 1.21777 1.19029 1.20896 0.93643 0.87553 1.00429 1.21149 0.95016 0.94051 0.87987 1.21929 0.98298 0.98764 0.99283 1.21440 0.96222 0.95191 0.98283 1.22051 1.02240 1.02264 0.94203 1.22821 0.92344 0.93650 0.97422 1.67778 1.11937 1.05095 1.30488 0.91021 0.91001 0.91525 0.84944 0.85134 0.82790 0.74928 0.89785 0.89304 0.94983 0.94614 0.92996 0.90630 0.91166 0.85301 0.85608 0.85629 0.83446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 9.59 36.00 0.35 -0.55 16 2 C -0.18 -2.18 5.91 -104.29 -0.62 -2.80 16 3 C -0.05 -0.54 9.85 -39.32 -0.39 -0.92 16 4 C -0.21 -2.32 10.11 -39.42 -0.40 -2.72 16 5 C 0.13 1.78 11.18 -17.56 -0.20 1.58 16 6 N -0.47 -8.44 7.87 -12.37 -0.10 -8.53 16 7 C 0.37 5.87 7.41 -154.69 -1.15 4.72 16 8 N -0.67 -10.08 5.30 -11.43 -0.06 -10.14 16 9 C 0.51 9.58 7.37 -10.99 -0.08 9.50 16 10 O -0.45 -10.39 13.41 5.55 0.07 -10.31 16 11 C 0.04 0.74 5.32 -4.97 -0.03 0.72 16 12 N -0.51 -10.75 4.29 -238.96 -1.03 -11.78 16 13 C 0.16 3.96 3.55 -4.98 -0.02 3.94 16 14 C -0.53 -14.80 7.88 -34.44 -0.27 -15.07 16 15 H 0.07 2.07 6.21 -52.49 -0.33 1.74 16 16 C 0.08 2.41 5.47 -17.82 -0.10 2.31 16 17 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 18 Si 0.87 23.23 27.37 -169.99 -4.65 18.58 16 19 H -0.27 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 21 H -0.27 -7.20 6.70 56.52 0.38 -6.82 16 22 C 0.10 1.94 5.04 -4.98 -0.03 1.92 16 23 C 0.16 2.99 5.69 -82.58 -0.47 2.52 16 24 C -0.16 -2.54 9.72 -39.44 -0.38 -2.92 16 25 C -0.09 -1.18 10.18 -39.28 -0.40 -1.58 16 26 C -0.19 -2.68 10.11 -39.44 -0.40 -3.08 16 27 C 0.10 1.67 11.18 -17.55 -0.20 1.48 16 28 N -0.44 -9.38 8.89 -9.47 -0.08 -9.46 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 31 H 0.07 0.54 6.56 -51.93 -0.34 0.20 16 32 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 33 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.15 1.80 8.06 -52.49 -0.42 1.37 16 35 H 0.41 4.61 6.68 -40.82 -0.27 4.33 16 36 H 0.08 1.58 6.48 -51.93 -0.34 1.24 16 37 H 0.09 1.21 7.80 -51.93 -0.41 0.80 16 38 H 0.03 0.90 6.00 -51.93 -0.31 0.59 16 39 H 0.04 0.97 5.58 -51.93 -0.29 0.68 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 41 H 0.08 1.62 6.29 -51.93 -0.33 1.30 16 42 H 0.07 1.05 7.76 -51.93 -0.40 0.65 16 43 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 44 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 45 H 0.13 1.39 8.06 -52.48 -0.42 0.96 16 46 H 0.15 2.32 8.06 -52.49 -0.42 1.89 16 LS Contribution 377.88 15.07 5.69 5.69 Total: -1.00 -38.16 377.88 -10.12 -48.28 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -5.97 Total: 5.62 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -4.77 Total: -0.96 kcal Atomic # 7 Polarization: -66.40 SS G_CDS: -0.49 Total: -66.90 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.07 Total: -10.31 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -4.65 Total: 18.58 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.16 -10.12 -48.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878168394.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.556 kcal (2) G-P(sol) polarization free energy of solvation -38.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds