Wall clock time and date at job start Tue Mar 31 2020 23:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38395 * 120.45108 * 2 1 4 4 C 1.38792 * 118.49969 * 180.02562 * 3 2 1 5 5 C 1.38120 * 119.30737 * 0.02562 * 4 3 2 6 6 N 1.31902 * 120.84379 * 359.71857 * 5 4 3 7 7 C 1.32373 * 121.63778 * 0.57170 * 6 5 4 8 8 N 1.39415 * 119.69424 * 179.70929 * 7 6 5 9 9 C 1.34769 * 119.99974 * 359.72479 * 8 7 6 10 10 O 1.21283 * 120.00403 * 0.02562 * 9 8 7 11 11 C 1.50706 * 119.99889 * 180.02562 * 9 8 7 12 12 N 1.46901 * 109.47005 * 174.33035 * 11 9 8 13 13 C 1.46904 * 111.00169 * 287.76991 * 12 11 9 14 14 C 1.50692 * 109.47286 * 294.41892 * 13 12 11 15 15 H 1.08000 * 119.99818 * 5.33217 * 14 13 12 16 16 C 1.37876 * 119.99949 * 185.33120 * 14 13 12 17 17 N 1.31519 * 119.99675 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 120.00128 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47485 * 90.00039 * 18 16 14 20 20 H 1.48503 * 109.47253 * 210.00122 * 18 16 14 21 21 H 1.48507 * 109.47162 * 329.99869 * 18 16 14 22 22 C 1.46897 * 110.99755 * 163.81811 * 12 11 9 23 23 C 1.50701 * 109.47032 * 189.99880 * 22 12 11 24 24 C 1.38234 * 119.61634 * 95.02166 * 23 22 12 25 25 C 1.38634 * 119.15842 * 179.74355 * 24 23 22 26 26 C 1.38667 * 118.42075 * 0.47814 * 25 24 23 27 27 C 1.38190 * 119.16425 * 359.50250 * 26 25 24 28 28 N 1.31858 * 119.62058 * 274.99826 * 23 22 12 29 29 H 1.09001 * 109.47262 * 269.97580 * 1 2 3 30 30 H 1.09002 * 109.47304 * 29.98085 * 1 2 3 31 31 H 1.09004 * 109.47183 * 149.97568 * 1 2 3 32 32 H 1.08002 * 120.74941 * 0.04334 * 3 2 1 33 33 H 1.08002 * 120.34832 * 179.97438 * 4 3 2 34 34 H 1.07998 * 119.57441 * 180.02562 * 5 4 3 35 35 H 0.96995 * 119.99640 * 179.72601 * 8 7 6 36 36 H 1.09004 * 109.47046 * 54.33165 * 11 9 8 37 37 H 1.08992 * 109.47200 * 294.33196 * 11 9 8 38 38 H 1.09002 * 109.46486 * 54.41890 * 13 12 11 39 39 H 1.08999 * 109.47098 * 174.41572 * 13 12 11 40 40 H 0.97005 * 119.99436 * 179.97438 * 17 16 14 41 41 H 1.09006 * 109.47253 * 70.00297 * 22 12 11 42 42 H 1.09002 * 109.47546 * 309.99837 * 22 12 11 43 43 H 1.07996 * 120.41913 * 359.95869 * 24 23 22 44 44 H 1.08004 * 120.78533 * 180.23006 * 25 24 23 45 45 H 1.08005 * 120.41830 * 179.78121 * 26 25 24 46 46 H 1.07999 * 119.61652 * 180.25520 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2083 1.1931 0.0000 4 6 3.5954 1.1458 -0.0005 5 6 4.2301 -0.0809 -0.0016 6 7 3.5351 -1.2020 0.0035 7 6 2.2114 -1.1983 -0.0015 8 7 1.5173 -2.4074 -0.0020 9 6 2.1941 -3.5728 -0.0030 10 8 3.4070 -3.5698 -0.0030 11 6 1.4439 -4.8799 -0.0041 12 7 2.3955 -5.9905 -0.1419 13 6 2.9414 -6.0501 -1.5044 14 6 1.8380 -6.3881 -2.4734 15 1 0.8176 -6.4584 -2.1266 16 6 2.1311 -6.6077 -3.8026 17 7 1.1681 -6.9032 -4.6482 18 14 3.8961 -6.4867 -4.4022 19 1 4.5474 -7.8170 -4.2957 20 1 3.9082 -6.0417 -5.8190 21 1 4.6359 -5.5052 -3.5688 22 6 1.7721 -7.2671 0.2317 23 6 2.8300 -8.3371 0.3158 24 6 3.4038 -8.6359 1.5374 25 6 4.3723 -9.6255 1.6048 26 6 4.7362 -10.2736 0.4341 27 6 4.1184 -9.9212 -0.7507 28 7 3.1973 -8.9777 -0.7766 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6880 2.1395 0.0007 33 1 4.1725 2.0587 -0.0010 34 1 5.3093 -0.1227 -0.0016 35 1 0.5474 -2.4098 -0.0016 36 1 0.7433 -4.8959 -0.8390 37 1 0.8959 -4.9850 0.9321 38 1 3.3712 -5.0832 -1.7661 39 1 3.7149 -6.8166 -1.5527 40 1 1.3743 -7.0573 -5.5835 41 1 1.0336 -7.5448 -0.5204 42 1 1.2829 -7.1630 1.2002 43 1 3.0990 -8.1075 2.4286 44 1 4.8352 -9.8828 2.5461 45 1 5.4898 -11.0472 0.4489 46 1 4.3933 -10.4241 -1.6661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878168394.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:57 Heat of formation + Delta-G solvation = 45.748092 kcal Electronic energy + Delta-G solvation = -29232.728254 eV Core-core repulsion = 25315.518358 eV Total energy + Delta-G solvation = -3917.209896 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.83449 -41.06056 -40.10304 -37.96610 -35.98962 -34.53781 -34.38546 -33.26477 -32.73257 -31.79442 -30.06083 -28.78323 -27.94073 -26.16270 -24.67722 -24.23793 -23.55036 -22.92446 -21.82214 -21.09904 -19.39693 -18.94861 -18.09166 -17.54255 -17.05087 -16.93573 -16.67699 -16.49366 -16.30044 -16.11696 -15.96929 -15.75221 -15.12121 -14.95574 -14.81952 -14.53015 -14.18803 -14.13811 -13.84996 -13.64094 -13.59955 -13.37337 -13.35138 -12.94602 -12.87392 -12.75975 -12.46367 -12.37045 -12.23416 -11.92693 -11.73052 -11.64396 -11.08982 -10.75320 -10.63515 -10.52704 -10.08810 -9.92106 -9.85069 -9.10425 -8.96336 -8.29226 -6.25464 0.16013 0.29335 0.44661 0.55060 1.24174 1.25328 1.38625 1.77964 1.92594 2.32394 2.89578 2.97993 3.09695 3.38553 3.51907 3.68674 3.86583 3.92913 3.93428 4.10366 4.10834 4.19892 4.31541 4.33387 4.35991 4.38779 4.55248 4.63515 4.64662 4.78529 4.81477 4.84884 4.91941 5.02657 5.09929 5.14776 5.18178 5.21985 5.31211 5.35398 5.37899 5.42063 5.51907 5.89884 5.94085 6.03939 6.18667 6.28786 6.40032 6.73474 7.12086 7.35017 7.39235 7.46071 8.86548 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011240 B = 0.003472 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.421287 B = 8062.405489 C = 9141.232716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.174 4.174 3 C -0.053 4.053 4 C -0.195 4.195 5 C 0.095 3.905 6 N -0.528 5.528 7 C 0.332 3.668 8 N -0.656 5.656 9 C 0.505 3.495 10 O -0.501 6.501 11 C 0.043 3.957 12 N -0.515 5.515 13 C 0.179 3.821 14 C -0.512 4.512 15 H 0.054 0.946 16 C 0.033 3.967 17 N -0.939 5.939 18 Si 0.920 3.080 19 H -0.269 1.269 20 H -0.282 1.282 21 H -0.278 1.278 22 C 0.107 3.893 23 C 0.121 3.879 24 C -0.159 4.159 25 C -0.079 4.079 26 C -0.172 4.172 27 C 0.066 3.934 28 N -0.502 5.502 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.175 0.825 33 H 0.167 0.833 34 H 0.161 0.839 35 H 0.429 0.571 36 H 0.071 0.929 37 H 0.138 0.862 38 H 0.001 0.999 39 H 0.019 0.981 40 H 0.262 0.738 41 H 0.040 0.960 42 H 0.114 0.886 43 H 0.156 0.844 44 H 0.170 0.830 45 H 0.164 0.836 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.522 10.296 16.419 19.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.179 4.179 3 C -0.078 4.078 4 C -0.216 4.216 5 C -0.062 4.062 6 N -0.242 5.242 7 C 0.101 3.899 8 N -0.306 5.306 9 C 0.291 3.709 10 O -0.371 6.371 11 C -0.088 4.088 12 N -0.238 5.238 13 C 0.052 3.948 14 C -0.551 4.551 15 H 0.072 0.928 16 C -0.165 4.165 17 N -0.580 5.580 18 Si 0.747 3.253 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.203 1.203 22 C -0.021 4.021 23 C -0.017 4.017 24 C -0.179 4.179 25 C -0.105 4.105 26 C -0.192 4.192 27 C -0.092 4.092 28 N -0.212 5.212 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.192 0.808 33 H 0.184 0.816 34 H 0.178 0.822 35 H 0.270 0.730 36 H 0.089 0.911 37 H 0.155 0.845 38 H 0.020 0.980 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.132 0.868 43 H 0.174 0.826 44 H 0.188 0.812 45 H 0.181 0.819 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.735 9.620 15.778 18.494 hybrid contribution -0.115 0.085 -1.055 1.065 sum 0.620 9.705 14.723 17.645 Atomic orbital electron populations 1.20773 0.87633 1.04171 1.03892 1.20700 0.99084 0.91476 1.06673 1.21746 0.93917 0.98259 0.93906 1.22367 0.95926 0.99412 1.03859 1.22974 1.00788 0.87473 0.94931 1.67567 1.07351 1.33220 1.16102 1.18746 0.88811 0.86304 0.96014 1.43669 1.11172 1.03135 1.72623 1.21278 0.88447 0.85749 0.75398 1.90746 1.15312 1.86933 1.44097 1.21937 0.94158 0.88080 1.04652 1.62095 1.33373 1.02196 1.26110 1.19778 0.94726 0.94901 0.85426 1.21603 0.94600 1.45765 0.93154 0.92821 1.25365 0.99226 0.94587 0.97369 1.70007 1.33403 1.50597 1.04040 0.86128 0.83070 0.78864 0.77244 1.19391 1.20772 1.20320 1.20972 0.93195 0.86555 1.01342 1.21267 0.96447 0.94845 0.89150 1.22214 0.97989 0.99010 0.98676 1.21967 0.95037 0.93695 0.99807 1.22417 1.01614 1.02158 0.93032 1.23075 0.92884 0.93910 0.99284 1.67611 1.14024 1.07029 1.32492 0.89104 0.88847 0.91668 0.80774 0.81579 0.82176 0.72999 0.91125 0.84467 0.98044 0.96327 0.92904 0.94194 0.86783 0.82615 0.81240 0.81877 0.83187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 9.59 71.23 0.68 -0.78 16 2 C -0.17 -3.80 5.91 -19.65 -0.12 -3.91 16 3 C -0.05 -0.92 9.85 22.44 0.22 -0.70 16 4 C -0.19 -3.79 10.11 22.37 0.23 -3.56 16 5 C 0.10 2.68 11.18 84.65 0.95 3.63 16 6 N -0.53 -19.53 7.87 -193.04 -1.52 -21.05 16 7 C 0.33 10.47 7.41 132.90 0.98 11.45 16 8 N -0.66 -20.08 5.30 -308.46 -1.63 -21.72 16 9 C 0.50 19.72 7.37 87.66 0.65 20.36 16 10 O -0.50 -24.48 13.41 -3.04 -0.04 -24.52 16 11 C 0.04 1.54 5.32 85.56 0.46 1.99 16 12 N -0.51 -22.14 4.29 -909.93 -3.90 -26.04 16 13 C 0.18 9.57 3.55 85.55 0.30 9.87 16 14 C -0.51 -29.75 7.88 25.60 0.20 -29.55 16 15 H 0.05 3.26 6.21 -2.91 -0.02 3.25 16 16 C 0.03 2.00 5.47 84.65 0.46 2.46 16 17 N -0.94 -59.74 13.96 21.45 0.30 -59.44 16 18 Si 0.92 49.86 27.37 68.60 1.88 51.74 16 19 H -0.27 -14.15 7.11 99.48 0.71 -13.45 16 20 H -0.28 -14.70 7.11 99.48 0.71 -13.99 16 21 H -0.28 -15.51 6.70 99.48 0.67 -14.84 16 22 C 0.11 4.09 5.04 85.56 0.43 4.52 16 23 C 0.12 4.62 5.69 42.55 0.24 4.87 16 24 C -0.16 -4.63 9.72 22.36 0.22 -4.41 16 25 C -0.08 -1.92 10.18 22.47 0.23 -1.69 16 26 C -0.17 -4.52 10.11 22.36 0.23 -4.30 16 27 C 0.07 2.32 11.18 84.67 0.95 3.26 16 28 N -0.50 -21.83 8.89 -183.88 -1.63 -23.46 16 29 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.09 0.91 8.10 -2.39 -0.02 0.89 16 31 H 0.06 0.92 6.56 -2.39 -0.02 0.90 16 32 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 33 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 34 H 0.16 3.91 8.06 -2.91 -0.02 3.89 16 35 H 0.43 9.41 6.68 -92.71 -0.62 8.79 16 36 H 0.07 2.74 6.48 -2.39 -0.02 2.73 16 37 H 0.14 3.49 7.80 -2.39 -0.02 3.47 16 38 H 0.00 0.09 6.00 -2.39 -0.01 0.07 16 39 H 0.02 1.06 5.58 -2.39 -0.01 1.05 16 40 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 41 H 0.04 1.79 6.29 -2.38 -0.01 1.78 16 42 H 0.11 3.22 7.76 -2.39 -0.02 3.20 16 43 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 44 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 45 H 0.16 2.97 8.06 -2.91 -0.02 2.94 16 46 H 0.15 4.88 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -90.91 377.88 1.11 -89.80 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.36 Total: 21.18 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 7.31 Total: 13.51 kcal Atomic # 7 Polarization: -143.32 SS G_CDS: -8.39 Total: -151.71 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.04 Total: -24.52 kcal Atomic # 14 Polarization: 49.86 SS G_CDS: 1.88 Total: 51.74 kcal Total: -90.91 1.11 -89.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878168394.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.552 kcal (2) G-P(sol) polarization free energy of solvation -90.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds