Wall clock time and date at job start Tue Mar 31 2020 22:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38280 * 119.92758 * 2 1 4 4 C 1.38118 * 120.06716 * 180.02562 * 3 2 1 5 5 C 1.38870 * 119.93053 * 0.02562 * 4 3 2 6 6 N 1.39928 * 120.06803 * 180.02562 * 5 4 3 7 7 C 1.45751 * 117.94375 * 269.32708 * 6 5 4 8 8 C 1.52922 * 110.48714 * 160.92825 * 7 6 5 9 9 C 1.53342 * 108.67436 * 50.75481 * 8 7 6 10 10 C 1.53072 * 108.42134 * 292.46705 * 9 8 7 11 11 H 1.08995 * 109.40513 * 288.85955 * 10 9 8 12 12 N 1.46509 * 109.40003 * 169.02926 * 10 9 8 13 13 C 1.35311 * 125.86632 * 275.00271 * 12 10 9 14 14 C 1.35356 * 106.17374 * 179.97438 * 13 12 10 15 15 C 1.50698 * 126.75234 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47083 * 125.00089 * 15 14 13 17 17 H 1.08004 * 120.00072 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00158 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00085 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 119.99786 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47313 * 90.00175 * 20 18 16 22 22 H 1.48505 * 109.47269 * 209.99854 * 20 18 16 23 23 H 1.48493 * 109.47374 * 329.99918 * 20 18 16 24 24 N 1.33772 * 106.49198 * 359.97438 * 14 13 12 25 25 N 1.28634 * 108.88879 * 359.73810 * 24 14 13 26 26 C 1.33348 * 117.94652 * 89.33234 * 6 5 4 27 27 O 1.21286 * 118.24668 * 2.19372 * 26 6 5 28 28 C 1.38868 * 119.85769 * 0.26926 * 5 4 3 29 29 C 1.38118 * 119.93148 * 359.47388 * 28 5 4 30 30 H 1.08993 * 109.47178 * 89.99804 * 1 2 3 31 31 H 1.08999 * 109.47039 * 210.00086 * 1 2 3 32 32 H 1.09000 * 109.47175 * 329.99524 * 1 2 3 33 33 H 1.08000 * 119.96909 * 359.97438 * 3 2 1 34 34 H 1.07998 * 120.02982 * 179.97438 * 4 3 2 35 35 H 1.09004 * 109.30447 * 40.61553 * 7 6 5 36 36 H 1.09004 * 109.29829 * 281.23938 * 7 6 5 37 37 H 1.08996 * 109.60187 * 170.50995 * 8 7 6 38 38 H 1.08993 * 109.60061 * 290.83157 * 8 7 6 39 39 H 1.08999 * 109.67797 * 52.19952 * 9 8 7 40 40 H 1.08997 * 109.67366 * 172.70415 * 9 8 7 41 41 H 1.07997 * 126.91563 * 359.97438 * 13 12 10 42 42 H 1.08999 * 109.47277 * 244.99850 * 15 14 13 43 43 H 1.08996 * 109.47202 * 4.99981 * 15 14 13 44 44 H 0.97005 * 120.00308 * 179.97438 * 19 18 16 45 45 H 1.08004 * 120.03668 * 179.72868 * 28 5 4 46 46 H 1.07995 * 119.96330 * 180.25075 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5781 1.2018 -0.0005 5 6 4.2739 0.0000 -0.0016 6 7 5.6732 0.0000 -0.0016 7 6 6.3562 -0.0139 -1.2891 8 6 7.8030 0.4559 -1.1326 9 6 8.4574 -0.3397 0.0032 10 6 7.7920 0.0630 1.3217 11 1 8.0950 1.0761 1.5856 12 7 8.2093 -0.8609 2.3794 13 6 7.6398 -2.0563 2.6580 14 6 8.3340 -2.5709 3.6999 15 6 8.0880 -3.8915 4.3830 16 6 9.3564 -4.7052 4.3748 17 1 10.2511 -4.3062 3.9200 18 6 9.3748 -5.9591 4.9478 19 7 10.4816 -6.6694 4.9402 20 14 7.8273 -6.6495 5.7337 21 1 7.0470 -7.3983 4.7160 22 1 8.2008 -7.5642 6.8424 23 1 7.0037 -5.5352 6.2676 24 7 9.2819 -1.6772 4.0032 25 7 9.1850 -0.6781 3.1987 26 6 6.2981 0.0127 1.1763 27 8 5.6240 -0.0174 2.1841 28 6 3.5781 -1.2018 -0.0078 29 6 2.1969 -1.1984 -0.0019 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 1.6552 2.1327 -0.0004 34 1 4.1163 2.1381 -0.0010 35 1 5.8352 0.6483 -1.9806 36 1 6.3479 -1.0274 -1.6903 37 1 8.3465 0.2820 -2.0613 38 1 7.8183 1.5192 -0.8937 39 1 8.3169 -1.4069 -0.1678 40 1 9.5225 -0.1118 0.0446 41 1 6.8004 -2.5088 2.1512 42 1 7.7759 -3.7156 5.4124 43 1 7.3048 -4.4341 3.8535 44 1 10.4947 -7.5514 5.3437 45 1 4.1163 -2.1381 -0.0131 46 1 1.6553 -2.1327 -0.0026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881314807.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:17 Heat of formation + Delta-G solvation = 102.362060 kcal Electronic energy + Delta-G solvation = -29147.224671 eV Core-core repulsion = 25232.469740 eV Total energy + Delta-G solvation = -3914.754930 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.77760 -41.32733 -39.21728 -37.03130 -35.69576 -33.65415 -32.78036 -31.49306 -31.33314 -31.20974 -29.40933 -27.97142 -27.02398 -25.17889 -23.42821 -23.15723 -23.03443 -21.94665 -21.29355 -20.25549 -19.33027 -17.96170 -17.46740 -16.76026 -16.63555 -16.14797 -15.83113 -15.53446 -15.35072 -14.61631 -14.47568 -14.39418 -14.11634 -14.07955 -13.94367 -13.91355 -13.81536 -13.20585 -12.65005 -12.54788 -12.47397 -12.29227 -12.13972 -12.00820 -11.88123 -11.74301 -11.64113 -11.43006 -11.12929 -10.63717 -10.60300 -10.22793 -10.03840 -9.83918 -9.40919 -9.37036 -9.28951 -9.28391 -8.92695 -8.50063 -8.21327 -5.96484 -3.94055 0.84454 1.05134 1.83070 2.06890 2.39948 2.81100 3.30435 3.34793 3.42581 3.43647 3.48082 3.85396 4.11348 4.16758 4.31495 4.47307 4.50406 4.51515 4.60483 4.62617 4.74988 4.91458 4.97408 5.03524 5.08683 5.14680 5.20119 5.23458 5.30164 5.34775 5.36248 5.42588 5.54621 5.63976 5.68018 5.72512 5.88812 5.96887 6.12863 6.15625 6.18661 6.22836 6.62752 6.79969 6.89321 7.06554 7.14952 7.26182 7.65879 7.76939 8.61357 9.11018 9.23740 9.63088 11.16968 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011550 B = 0.003095 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.612665 B = 9044.053242 C =10682.068807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.081 4.081 3 C -0.114 4.114 4 C -0.103 4.103 5 C 0.126 3.874 6 N -0.558 5.558 7 C 0.110 3.890 8 C -0.130 4.130 9 C -0.136 4.136 10 C 0.147 3.853 11 H 0.139 0.861 12 N -0.293 5.293 13 C -0.061 4.061 14 C 0.041 3.959 15 C 0.060 3.940 16 C -0.505 4.505 17 H 0.077 0.923 18 C 0.068 3.932 19 N -0.901 5.901 20 Si 0.875 3.125 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.264 1.264 24 N -0.247 5.247 25 N -0.101 5.101 26 C 0.512 3.488 27 O -0.505 6.505 28 C -0.099 4.099 29 C -0.112 4.112 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.174 0.826 42 H 0.039 0.961 43 H 0.030 0.970 44 H 0.263 0.737 45 H 0.126 0.874 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.991 17.856 -20.474 32.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.081 4.081 3 C -0.133 4.133 4 C -0.122 4.122 5 C 0.037 3.963 6 N -0.290 5.290 7 C -0.012 4.012 8 C -0.168 4.168 9 C -0.175 4.175 10 C 0.040 3.960 11 H 0.156 0.844 12 N -0.088 5.088 13 C -0.209 4.209 14 C -0.096 4.096 15 C 0.021 3.979 16 C -0.543 4.543 17 H 0.095 0.905 18 C -0.133 4.133 19 N -0.540 5.540 20 Si 0.702 3.298 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.188 1.188 24 N -0.114 5.114 25 N -0.079 5.079 26 C 0.297 3.703 27 O -0.377 6.377 28 C -0.119 4.119 29 C -0.130 4.130 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.118 0.882 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.114 0.886 41 H 0.191 0.809 42 H 0.057 0.943 43 H 0.048 0.952 44 H 0.073 0.927 45 H 0.144 0.856 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.090 18.623 -19.403 31.865 hybrid contribution -1.517 -1.111 -0.088 1.883 sum -18.607 17.512 -19.491 32.137 Atomic orbital electron populations 1.20819 0.90911 1.03112 1.02416 1.20021 0.96352 0.93095 0.98593 1.20908 0.93418 0.97817 1.01125 1.21229 0.94415 0.97175 0.99425 1.17463 0.82057 0.93400 1.03397 1.44818 1.04307 1.73727 1.06167 1.21637 0.93011 1.02784 0.83764 1.21885 0.94215 1.00835 0.99911 1.22169 1.01856 1.02368 0.91131 1.21152 0.91342 0.95996 0.87524 0.84356 1.46711 1.23253 1.14353 1.24477 1.23118 1.04712 0.88768 1.04330 1.22407 0.92719 0.98572 0.95893 1.18150 0.98479 0.86137 0.95169 1.20916 0.95954 0.99752 1.37676 0.90529 1.24958 0.96016 0.96701 0.95624 1.69902 1.26716 1.11862 1.45562 0.86850 0.84041 0.79358 0.79551 1.20252 1.21206 1.18834 1.75066 1.20065 0.98850 1.17449 1.78247 1.07156 1.21615 1.00894 1.19864 0.89680 0.77414 0.83300 1.90859 1.65291 1.46462 1.35098 1.21310 0.94468 0.97453 0.98632 1.20959 0.93474 0.97930 1.00645 0.90987 0.91284 0.91393 0.85589 0.85887 0.89759 0.90680 0.88152 0.90138 0.89520 0.88589 0.80913 0.94341 0.95213 0.92722 0.85617 0.85419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 10.01 36.01 0.36 -0.29 16 2 C -0.08 -0.66 5.88 -104.59 -0.62 -1.27 16 3 C -0.11 -0.93 9.69 -39.61 -0.38 -1.32 16 4 C -0.10 -0.95 9.97 -39.39 -0.39 -1.34 16 5 C 0.13 1.29 4.01 -83.69 -0.34 0.96 16 6 N -0.56 -5.37 2.85 -114.64 -0.33 -5.70 16 7 C 0.11 0.63 6.35 -4.49 -0.03 0.60 16 8 C -0.13 -0.62 6.02 -26.59 -0.16 -0.78 16 9 C -0.14 -1.17 5.63 -26.52 -0.15 -1.32 16 10 C 0.15 1.80 3.32 -69.29 -0.23 1.57 16 11 H 0.14 1.47 8.14 -51.93 -0.42 1.05 16 12 N -0.29 -5.22 3.11 -56.10 -0.17 -5.40 16 13 C -0.06 -1.20 10.11 -17.05 -0.17 -1.38 16 14 C 0.04 0.98 6.44 -82.78 -0.53 0.44 16 15 C 0.06 1.53 4.62 -29.04 -0.13 1.40 16 16 C -0.50 -15.09 9.64 -34.44 -0.33 -15.42 16 17 H 0.08 2.53 7.98 -52.48 -0.42 2.11 16 18 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 19 N -0.90 -28.46 13.96 55.43 0.77 -27.68 16 20 Si 0.87 21.92 27.47 -169.99 -4.67 17.26 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 24 N -0.25 -6.13 12.40 33.29 0.41 -5.71 16 25 N -0.10 -2.14 13.16 60.35 0.79 -1.35 16 26 C 0.51 6.60 6.40 -11.87 -0.08 6.52 16 27 O -0.50 -8.81 15.77 5.55 0.09 -8.72 16 28 C -0.10 -1.01 9.97 -39.39 -0.39 -1.40 16 29 C -0.11 -0.99 9.69 -39.61 -0.38 -1.37 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 32 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 33 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 35 H 0.08 0.34 8.08 -51.93 -0.42 -0.08 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 0.32 8.13 -51.93 -0.42 -0.10 16 39 H 0.09 0.83 8.13 -51.93 -0.42 0.41 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.17 2.99 7.92 -52.49 -0.42 2.58 16 42 H 0.04 1.00 7.20 -51.93 -0.37 0.63 16 43 H 0.03 0.71 7.55 -51.93 -0.39 0.32 16 44 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 45 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 46 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 385.11 15.07 5.80 5.80 Total: -1.00 -38.51 385.11 -8.03 -46.54 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -6.68 Total: -2.57 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -4.06 Total: -12.47 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 1.48 Total: -45.84 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.09 Total: -8.72 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -38.51 -8.03 -46.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881314807.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.901 kcal (2) G-P(sol) polarization free energy of solvation -38.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds