Wall clock time and date at job start Tue Mar 31 2020 22:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38280 * 119.92758 * 2 1 4 4 C 1.38118 * 120.06716 * 180.02562 * 3 2 1 5 5 C 1.38870 * 119.93053 * 0.02562 * 4 3 2 6 6 N 1.39928 * 120.06803 * 180.02562 * 5 4 3 7 7 C 1.45751 * 117.94375 * 269.32708 * 6 5 4 8 8 C 1.52922 * 110.48714 * 160.92825 * 7 6 5 9 9 C 1.53342 * 108.67436 * 50.75481 * 8 7 6 10 10 C 1.53072 * 108.42134 * 292.46705 * 9 8 7 11 11 H 1.08995 * 109.40513 * 288.85955 * 10 9 8 12 12 N 1.46509 * 109.40003 * 169.02926 * 10 9 8 13 13 C 1.35311 * 125.86632 * 275.00271 * 12 10 9 14 14 C 1.35356 * 106.17374 * 179.97438 * 13 12 10 15 15 C 1.50698 * 126.75234 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47083 * 125.00089 * 15 14 13 17 17 H 1.08004 * 120.00072 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00158 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00085 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 119.99786 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47313 * 90.00175 * 20 18 16 22 22 H 1.48505 * 109.47269 * 209.99854 * 20 18 16 23 23 H 1.48493 * 109.47374 * 329.99918 * 20 18 16 24 24 N 1.33772 * 106.49198 * 359.97438 * 14 13 12 25 25 N 1.28634 * 108.88879 * 359.73810 * 24 14 13 26 26 C 1.33348 * 117.94652 * 89.33234 * 6 5 4 27 27 O 1.21286 * 118.24668 * 2.19372 * 26 6 5 28 28 C 1.38868 * 119.85769 * 0.26926 * 5 4 3 29 29 C 1.38118 * 119.93148 * 359.47388 * 28 5 4 30 30 H 1.08993 * 109.47178 * 89.99804 * 1 2 3 31 31 H 1.08999 * 109.47039 * 210.00086 * 1 2 3 32 32 H 1.09000 * 109.47175 * 329.99524 * 1 2 3 33 33 H 1.08000 * 119.96909 * 359.97438 * 3 2 1 34 34 H 1.07998 * 120.02982 * 179.97438 * 4 3 2 35 35 H 1.09004 * 109.30447 * 40.61553 * 7 6 5 36 36 H 1.09004 * 109.29829 * 281.23938 * 7 6 5 37 37 H 1.08996 * 109.60187 * 170.50995 * 8 7 6 38 38 H 1.08993 * 109.60061 * 290.83157 * 8 7 6 39 39 H 1.08999 * 109.67797 * 52.19952 * 9 8 7 40 40 H 1.08997 * 109.67366 * 172.70415 * 9 8 7 41 41 H 1.07997 * 126.91563 * 359.97438 * 13 12 10 42 42 H 1.08999 * 109.47277 * 244.99850 * 15 14 13 43 43 H 1.08996 * 109.47202 * 4.99981 * 15 14 13 44 44 H 0.97005 * 120.00308 * 179.97438 * 19 18 16 45 45 H 1.08004 * 120.03668 * 179.72868 * 28 5 4 46 46 H 1.07995 * 119.96330 * 180.25075 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5781 1.2018 -0.0005 5 6 4.2739 0.0000 -0.0016 6 7 5.6732 0.0000 -0.0016 7 6 6.3562 -0.0139 -1.2891 8 6 7.8030 0.4559 -1.1326 9 6 8.4574 -0.3397 0.0032 10 6 7.7920 0.0630 1.3217 11 1 8.0950 1.0761 1.5856 12 7 8.2093 -0.8609 2.3794 13 6 7.6398 -2.0563 2.6580 14 6 8.3340 -2.5709 3.6999 15 6 8.0880 -3.8915 4.3830 16 6 9.3564 -4.7052 4.3748 17 1 10.2511 -4.3062 3.9200 18 6 9.3748 -5.9591 4.9478 19 7 10.4816 -6.6694 4.9402 20 14 7.8273 -6.6495 5.7337 21 1 7.0470 -7.3983 4.7160 22 1 8.2008 -7.5642 6.8424 23 1 7.0037 -5.5352 6.2676 24 7 9.2819 -1.6772 4.0032 25 7 9.1850 -0.6781 3.1987 26 6 6.2981 0.0127 1.1763 27 8 5.6240 -0.0174 2.1841 28 6 3.5781 -1.2018 -0.0078 29 6 2.1969 -1.1984 -0.0019 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 1.6552 2.1327 -0.0004 34 1 4.1163 2.1381 -0.0010 35 1 5.8352 0.6483 -1.9806 36 1 6.3479 -1.0274 -1.6903 37 1 8.3465 0.2820 -2.0613 38 1 7.8183 1.5192 -0.8937 39 1 8.3169 -1.4069 -0.1678 40 1 9.5225 -0.1118 0.0446 41 1 6.8004 -2.5088 2.1512 42 1 7.7759 -3.7156 5.4124 43 1 7.3048 -4.4341 3.8535 44 1 10.4947 -7.5514 5.3437 45 1 4.1163 -2.1381 -0.0131 46 1 1.6553 -2.1327 -0.0026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881314807.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:16 Heat of formation + Delta-G solvation = 77.063114 kcal Electronic energy + Delta-G solvation = -29148.321715 eV Core-core repulsion = 25232.469740 eV Total energy + Delta-G solvation = -3915.851975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.33724 -42.23049 -39.94611 -37.89075 -36.76573 -35.46351 -34.11692 -33.17692 -32.15519 -31.97490 -30.48654 -29.84220 -27.62172 -26.07142 -25.19731 -24.16392 -23.77775 -23.05442 -22.27517 -21.93330 -20.13109 -18.95930 -18.88827 -18.55149 -17.70234 -17.01379 -16.89250 -16.52995 -16.34025 -16.06266 -15.77678 -15.42243 -15.24554 -15.01639 -14.79149 -14.59981 -14.56632 -14.44171 -14.21932 -14.10581 -13.42663 -13.12043 -13.04560 -12.92233 -12.83356 -12.58742 -12.55209 -12.45773 -12.38867 -12.23994 -12.00138 -11.94667 -11.75464 -11.55688 -11.22735 -10.90204 -10.76091 -10.13653 -9.97906 -9.94970 -9.56387 -8.26538 -6.31602 0.16720 0.39185 0.54372 0.77745 1.37854 1.42067 1.45846 1.54033 1.62920 1.69927 2.38522 2.65428 2.95359 3.06700 3.32654 3.46493 3.53101 3.75942 3.84522 3.89824 3.97311 4.00174 4.04652 4.19875 4.25789 4.39987 4.42841 4.44416 4.48968 4.59916 4.69135 4.77669 4.85132 4.85387 4.94577 4.95430 5.06197 5.08568 5.13621 5.21685 5.26546 5.31335 5.44694 5.46278 5.55151 5.59999 5.62051 5.96003 6.05198 6.29562 6.72219 6.75759 7.29886 7.53962 8.90882 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011550 B = 0.003095 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.612665 B = 9044.053242 C =10682.068807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.118 4.118 4 C -0.112 4.112 5 C 0.105 3.895 6 N -0.543 5.543 7 C 0.100 3.900 8 C -0.117 4.117 9 C -0.131 4.131 10 C 0.135 3.865 11 H 0.156 0.844 12 N -0.274 5.274 13 C -0.039 4.039 14 C 0.002 3.998 15 C 0.067 3.933 16 C -0.516 4.516 17 H 0.024 0.976 18 C 0.007 3.993 19 N -0.950 5.950 20 Si 0.953 3.047 21 H -0.255 1.255 22 H -0.282 1.282 23 H -0.249 1.249 24 N -0.298 5.298 25 N -0.106 5.106 26 C 0.514 3.486 27 O -0.560 6.560 28 C -0.117 4.117 29 C -0.121 4.121 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.148 0.852 34 H 0.133 0.867 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.132 0.868 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.199 0.801 42 H 0.033 0.967 43 H 0.053 0.947 44 H 0.268 0.732 45 H 0.122 0.878 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.964 18.985 -22.747 36.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.085 4.085 3 C -0.137 4.137 4 C -0.131 4.131 5 C 0.016 3.984 6 N -0.272 5.272 7 C -0.020 4.020 8 C -0.155 4.155 9 C -0.170 4.170 10 C 0.030 3.970 11 H 0.173 0.827 12 N -0.070 5.070 13 C -0.189 4.189 14 C -0.135 4.135 15 C 0.028 3.972 16 C -0.554 4.554 17 H 0.042 0.958 18 C -0.189 4.189 19 N -0.591 5.591 20 Si 0.775 3.225 21 H -0.180 1.180 22 H -0.208 1.208 23 H -0.173 1.173 24 N -0.164 5.164 25 N -0.084 5.084 26 C 0.300 3.700 27 O -0.437 6.437 28 C -0.136 4.136 29 C -0.140 4.140 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.166 0.834 34 H 0.151 0.849 35 H 0.128 0.872 36 H 0.102 0.898 37 H 0.150 0.850 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.118 0.882 41 H 0.216 0.784 42 H 0.051 0.949 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.140 0.860 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -20.054 19.800 -21.757 35.603 hybrid contribution -0.589 -1.337 0.449 1.528 sum -20.643 18.463 -21.309 34.944 Atomic orbital electron populations 1.20869 0.89082 1.03688 1.03481 1.20369 0.97790 0.92813 0.97533 1.21232 0.93249 0.98868 1.00302 1.21415 0.95075 0.97176 0.99437 1.17663 0.82240 0.93965 1.04551 1.44869 1.04434 1.71475 1.06449 1.22005 0.93552 1.04199 0.82217 1.21928 0.93259 1.00886 0.99431 1.22225 1.02115 1.02469 0.90187 1.21781 0.91801 0.95824 0.87582 0.82678 1.47092 1.21450 1.14278 1.24142 1.23279 1.04130 0.88883 1.02634 1.22309 0.94431 0.98688 0.98113 1.17974 0.96803 0.86873 0.95559 1.21042 0.96091 1.00694 1.37622 0.95787 1.25979 1.00154 0.96815 0.95985 1.70065 1.29611 1.12586 1.46811 0.85620 0.79130 0.78880 0.78828 1.17970 1.20763 1.17272 1.74989 1.21703 1.00145 1.19597 1.78096 1.08296 1.20768 1.01248 1.19873 0.89426 0.77037 0.83631 1.90838 1.66205 1.49579 1.37049 1.21413 0.95224 0.97367 0.99631 1.21208 0.93221 0.99031 1.00517 0.89575 0.91001 0.90560 0.83412 0.84921 0.87250 0.89774 0.85013 0.88608 0.90500 0.88218 0.78416 0.94857 0.92862 0.92301 0.86024 0.84108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.01 71.24 0.71 -0.29 16 2 C -0.09 -1.22 5.88 -19.84 -0.12 -1.33 16 3 C -0.12 -1.68 9.69 22.25 0.22 -1.46 16 4 C -0.11 -1.86 9.97 22.39 0.22 -1.64 16 5 C 0.10 2.00 4.01 38.15 0.15 2.16 16 6 N -0.54 -9.38 2.85 -635.81 -1.81 -11.19 16 7 C 0.10 0.82 6.35 86.49 0.55 1.37 16 8 C -0.12 -0.68 6.02 30.68 0.18 -0.49 16 9 C -0.13 -1.96 5.63 30.73 0.17 -1.79 16 10 C 0.13 3.13 3.32 44.10 0.15 3.27 16 11 H 0.16 3.07 8.14 -2.39 -0.02 3.05 16 12 N -0.27 -9.76 3.11 -331.39 -1.03 -10.79 16 13 C -0.04 -1.55 10.11 83.49 0.84 -0.70 16 14 C 0.00 0.12 6.44 41.60 0.27 0.39 16 15 C 0.07 3.49 4.62 29.10 0.13 3.62 16 16 C -0.52 -32.10 9.64 25.60 0.25 -31.85 16 17 H 0.02 1.69 7.98 -2.91 -0.02 1.66 16 18 C 0.01 0.45 5.47 84.65 0.46 0.91 16 19 N -0.95 -61.86 13.96 21.45 0.30 -61.56 16 20 Si 0.95 45.29 27.47 68.60 1.88 47.17 16 21 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.25 -11.18 6.54 99.48 0.65 -10.52 16 24 N -0.30 -15.39 12.40 -48.60 -0.60 -16.00 16 25 N -0.11 -4.59 13.16 37.02 0.49 -4.11 16 26 C 0.51 12.63 6.40 87.72 0.56 13.19 16 27 O -0.56 -19.39 15.77 -3.05 -0.05 -19.44 16 28 C -0.12 -2.26 9.97 22.39 0.22 -2.03 16 29 C -0.12 -1.99 9.69 22.25 0.22 -1.77 16 30 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.60 8.08 -2.39 -0.02 0.58 16 32 H 0.08 0.55 8.08 -2.39 -0.02 0.53 16 33 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 34 H 0.13 1.84 8.06 -2.91 -0.02 1.81 16 35 H 0.11 0.45 8.08 -2.38 -0.02 0.43 16 36 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 37 H 0.13 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.10 0.35 8.13 -2.39 -0.02 0.33 16 39 H 0.08 1.34 8.13 -2.39 -0.02 1.32 16 40 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.20 6.66 7.92 -2.91 -0.02 6.64 16 42 H 0.03 1.75 7.20 -2.39 -0.02 1.73 16 43 H 0.05 2.49 7.55 -2.39 -0.02 2.47 16 44 H 0.27 16.11 8.31 -92.70 -0.77 15.34 16 45 H 0.12 2.31 8.06 -2.91 -0.02 2.29 16 46 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -89.26 385.11 5.30 -83.95 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 0.92 Total: 10.42 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: 5.20 Total: -18.46 kcal Atomic # 7 Polarization: -100.99 SS G_CDS: -2.66 Total: -103.64 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.05 Total: -19.44 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.88 Total: 47.17 kcal Total: -89.26 5.30 -83.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881314807.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.014 kcal (2) G-P(sol) polarization free energy of solvation -89.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds