Wall clock time and date at job start Tue Mar 31 2020 22:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38281 * 119.92768 * 2 1 4 4 C 1.38122 * 120.06910 * 179.97438 * 3 2 1 5 5 C 1.38868 * 119.92889 * 0.02562 * 4 3 2 6 6 N 1.39920 * 120.07366 * 179.97438 * 5 4 3 7 7 C 1.45750 * 117.94879 * 269.42894 * 6 5 4 8 8 C 1.52922 * 110.49143 * 160.92015 * 7 6 5 9 9 C 1.53348 * 108.67158 * 50.75227 * 8 7 6 10 10 C 1.53069 * 108.42705 * 292.47175 * 9 8 7 11 11 H 1.08999 * 109.39971 * 168.94767 * 10 9 8 12 12 N 1.46507 * 109.39906 * 288.76877 * 10 9 8 13 13 C 1.35315 * 125.86445 * 85.00311 * 12 10 9 14 14 C 1.35349 * 106.17386 * 179.97438 * 13 12 10 15 15 C 1.50699 * 126.75197 * 179.74015 * 14 13 12 16 16 C 1.50704 * 109.47081 * 124.99660 * 15 14 13 17 17 H 1.07999 * 120.00089 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99731 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99878 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99677 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47017 * 60.00709 * 20 18 16 22 22 H 1.48503 * 109.46672 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47219 * 299.99886 * 20 18 16 24 24 N 1.33775 * 106.49319 * 359.97438 * 14 13 12 25 25 N 1.28626 * 108.88829 * 0.02562 * 24 14 13 26 26 C 1.33360 * 117.94850 * 89.42658 * 6 5 4 27 27 O 1.21286 * 118.24377 * 2.22484 * 26 6 5 28 28 C 1.38874 * 119.85799 * 0.25321 * 5 4 3 29 29 C 1.38118 * 119.93070 * 359.47370 * 28 5 4 30 30 H 1.09001 * 109.46949 * 89.99753 * 1 2 3 31 31 H 1.08994 * 109.47027 * 210.00231 * 1 2 3 32 32 H 1.09002 * 109.47415 * 330.00564 * 1 2 3 33 33 H 1.07996 * 119.97147 * 359.97438 * 3 2 1 34 34 H 1.07999 * 120.03283 * 180.02562 * 4 3 2 35 35 H 1.09000 * 109.29674 * 40.61320 * 7 6 5 36 36 H 1.08993 * 109.30440 * 281.23348 * 7 6 5 37 37 H 1.09000 * 109.60280 * 290.99903 * 8 7 6 38 38 H 1.08992 * 109.74190 * 170.58931 * 8 7 6 39 39 H 1.08996 * 109.67277 * 172.73442 * 9 8 7 40 40 H 1.09002 * 109.70062 * 52.21986 * 9 8 7 41 41 H 1.07999 * 126.91408 * 359.93779 * 13 12 10 42 42 H 1.08996 * 109.46987 * 244.99541 * 15 14 13 43 43 H 1.09002 * 109.47187 * 4.99589 * 15 14 13 44 44 H 0.97009 * 119.99740 * 179.97438 * 19 18 16 45 45 H 1.08002 * 120.03747 * 179.74613 * 28 5 4 46 46 H 1.07994 * 119.96629 * 180.27345 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5781 1.2018 0.0005 5 6 4.2739 0.0001 0.0005 6 7 5.6731 0.0000 0.0005 7 6 6.3562 -0.0129 -1.2869 8 6 7.8030 0.4569 -1.1300 9 6 8.4574 -0.3397 0.0053 10 6 7.7919 0.0618 1.3240 11 1 8.1012 -0.6271 2.1101 12 7 8.2009 1.4226 1.6810 13 6 7.6228 2.5648 1.2427 14 6 8.3106 3.5796 1.8163 15 6 8.0572 5.0545 1.6385 16 6 7.8609 5.6967 2.9876 17 1 7.9139 5.0968 3.8841 18 6 7.6136 7.0502 3.0774 19 7 7.5496 7.7807 1.9857 20 14 7.3696 7.8460 4.7497 21 1 8.5886 7.6486 5.5744 22 1 7.1212 9.2996 4.5744 23 1 6.2056 7.2229 5.4293 24 7 9.2628 3.0159 2.5680 25 7 9.1711 1.7370 2.4661 26 6 6.2981 0.0117 1.1785 27 8 5.6240 -0.0196 2.1863 28 6 3.5780 -1.2018 -0.0053 29 6 2.1969 -1.1984 -0.0001 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 1.6552 2.1327 -0.0004 34 1 4.1163 2.1382 0.0010 35 1 5.8352 0.6500 -1.9778 36 1 6.3480 -1.0259 -1.6890 37 1 7.8182 1.5194 -0.8873 38 1 8.3483 0.2860 -2.0581 39 1 9.5223 -0.1114 0.0472 40 1 8.3173 -1.4069 -0.1664 41 1 6.7822 2.6496 0.5700 42 1 8.9110 5.5122 1.1390 43 1 7.1620 5.1990 1.0335 44 1 7.3753 8.7329 2.0489 45 1 4.1163 -2.1381 -0.0095 46 1 1.6552 -2.1327 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881314808.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:21 Heat of formation + Delta-G solvation = 97.579700 kcal Electronic energy + Delta-G solvation = -29506.362735 eV Core-core repulsion = 25591.400426 eV Total energy + Delta-G solvation = -3914.962309 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.83363 -41.22693 -39.12142 -36.99053 -35.62031 -33.61013 -32.68607 -31.39015 -31.22262 -31.02738 -29.49482 -27.49728 -26.93391 -25.11069 -23.64330 -23.08825 -23.00476 -22.07857 -21.24134 -20.43134 -19.13930 -17.91321 -17.33578 -16.45166 -16.25520 -16.16371 -15.74925 -15.72243 -15.05190 -14.77426 -14.48226 -14.39101 -14.09021 -13.99836 -13.86560 -13.72663 -13.69225 -13.17146 -12.56512 -12.52629 -12.31325 -12.19015 -11.92418 -11.84405 -11.67396 -11.61612 -11.53089 -11.32166 -11.04884 -10.71764 -10.66695 -10.30359 -10.10630 -9.69690 -9.45203 -9.33654 -9.26482 -9.17806 -8.82221 -8.43470 -8.15757 -5.98004 -3.98351 0.95100 1.16288 1.75450 2.09321 2.47892 2.97224 3.40359 3.41131 3.41350 3.43431 3.51766 3.89283 4.16157 4.26499 4.32965 4.53352 4.57445 4.62711 4.73392 4.78965 4.88681 4.97852 5.06917 5.07387 5.13992 5.16759 5.28715 5.32371 5.38702 5.40751 5.45915 5.52990 5.63967 5.70210 5.77790 5.79187 5.99422 6.01733 6.21078 6.22395 6.27257 6.33879 6.73431 6.89706 7.03552 7.08839 7.50374 7.60223 7.71746 8.00004 8.37363 9.04654 9.23329 9.64531 11.13055 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010024 B = 0.003495 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.658196 B = 8009.504736 C = 9888.676532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.081 4.081 3 C -0.110 4.110 4 C -0.099 4.099 5 C 0.124 3.876 6 N -0.557 5.557 7 C 0.113 3.887 8 C -0.147 4.147 9 C -0.135 4.135 10 C 0.145 3.855 11 H 0.139 0.861 12 N -0.292 5.292 13 C -0.080 4.080 14 C 0.042 3.958 15 C 0.093 3.907 16 C -0.504 4.504 17 H 0.059 0.941 18 C 0.058 3.942 19 N -0.899 5.899 20 Si 0.896 3.104 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.277 1.277 24 N -0.254 5.254 25 N -0.099 5.099 26 C 0.516 3.484 27 O -0.507 6.507 28 C -0.103 4.103 29 C -0.116 4.116 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.174 0.826 42 H 0.040 0.960 43 H 0.035 0.965 44 H 0.262 0.738 45 H 0.122 0.878 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.667 -21.748 -13.465 27.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.081 4.081 3 C -0.129 4.129 4 C -0.118 4.118 5 C 0.035 3.965 6 N -0.289 5.289 7 C -0.009 4.009 8 C -0.185 4.185 9 C -0.174 4.174 10 C 0.039 3.961 11 H 0.157 0.843 12 N -0.089 5.089 13 C -0.227 4.227 14 C -0.095 4.095 15 C 0.055 3.945 16 C -0.543 4.543 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.538 5.538 20 Si 0.724 3.276 21 H -0.200 1.200 22 H -0.213 1.213 23 H -0.203 1.203 24 N -0.121 5.121 25 N -0.077 5.077 26 C 0.301 3.699 27 O -0.379 6.379 28 C -0.122 4.122 29 C -0.134 4.134 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.191 0.809 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.071 0.929 45 H 0.140 0.860 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.878 -22.127 -12.066 26.721 hybrid contribution -1.008 0.734 0.161 1.257 sum -9.886 -21.393 -11.905 26.403 Atomic orbital electron populations 1.20814 0.90948 1.03062 1.02396 1.20017 0.96326 0.93096 0.98658 1.20981 0.93479 0.97982 1.00411 1.21365 0.94572 0.97564 0.98295 1.17474 0.82035 0.93428 1.03547 1.44824 1.04382 1.73348 1.06305 1.21604 0.93062 1.02442 0.83775 1.22054 0.94244 1.02051 1.00154 1.22160 1.01863 1.01488 0.91851 1.21358 0.91137 0.82525 1.01096 0.84298 1.46846 1.23444 1.05857 1.32790 1.23182 1.05315 0.85257 1.08989 1.23012 0.92513 0.99557 0.94393 1.17731 0.97740 0.80708 0.98345 1.21004 1.48137 0.93034 0.92122 0.92304 1.24951 0.95387 0.97163 0.96765 1.69935 1.49913 1.06622 1.27362 0.86576 0.78860 0.77881 0.84284 1.20041 1.21288 1.20293 1.75079 1.21278 0.97217 1.18555 1.78250 1.07399 1.11133 1.10912 1.19778 0.89532 0.77392 0.83203 1.90829 1.65416 1.46354 1.35295 1.21199 0.94376 0.97085 0.99537 1.20888 0.93416 0.97751 1.01365 0.91008 0.91463 0.91263 0.85301 0.85410 0.89654 0.90807 0.89690 0.88427 0.88788 0.88618 0.80925 0.94165 0.94674 0.92875 0.85954 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 10.01 36.00 0.36 -0.41 16 2 C -0.08 -0.75 5.88 -104.59 -0.62 -1.37 16 3 C -0.11 -1.15 9.69 -39.61 -0.38 -1.54 16 4 C -0.10 -1.18 9.97 -39.39 -0.39 -1.57 16 5 C 0.12 1.44 4.01 -83.70 -0.34 1.10 16 6 N -0.56 -6.04 2.85 -114.65 -0.33 -6.37 16 7 C 0.11 0.81 6.35 -4.49 -0.03 0.78 16 8 C -0.15 -1.11 5.96 -26.59 -0.16 -1.27 16 9 C -0.14 -1.12 5.67 -26.52 -0.15 -1.27 16 10 C 0.15 1.84 3.42 -69.30 -0.24 1.61 16 11 H 0.14 1.64 8.14 -51.93 -0.42 1.22 16 12 N -0.29 -5.10 3.20 -56.10 -0.18 -5.28 16 13 C -0.08 -1.52 8.79 -17.05 -0.15 -1.67 16 14 C 0.04 0.98 6.44 -82.78 -0.53 0.45 16 15 C 0.09 2.47 5.55 -29.03 -0.16 2.31 16 16 C -0.50 -14.85 9.09 -34.44 -0.31 -15.17 16 17 H 0.06 1.78 7.74 -52.49 -0.41 1.38 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 20 Si 0.90 22.54 29.54 -169.99 -5.02 17.52 16 21 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 N -0.25 -6.14 12.40 33.29 0.41 -5.73 16 25 N -0.10 -2.06 13.16 60.35 0.79 -1.26 16 26 C 0.52 7.15 5.98 -11.87 -0.07 7.08 16 27 O -0.51 -9.33 16.71 5.55 0.09 -9.23 16 28 C -0.10 -1.04 9.97 -39.39 -0.39 -1.43 16 29 C -0.12 -1.05 9.69 -39.61 -0.38 -1.43 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 33 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.09 0.55 8.08 -51.93 -0.42 0.13 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.86 5.69 -51.93 -0.30 0.57 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.10 0.52 8.13 -51.93 -0.42 0.10 16 41 H 0.17 2.86 7.53 -52.49 -0.40 2.47 16 42 H 0.04 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.04 0.92 8.12 -51.93 -0.42 0.50 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 46 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 385.24 15.07 5.81 5.81 Total: -1.00 -36.72 385.24 -8.29 -45.01 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -6.56 Total: -2.21 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -4.04 Total: -12.20 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 1.44 Total: -44.69 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.72 -8.29 -45.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881314808.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.592 kcal (2) G-P(sol) polarization free energy of solvation -36.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds