Wall clock time and date at job start Tue Mar 31 2020 22:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38281 * 119.92768 * 2 1 4 4 C 1.38122 * 120.06910 * 179.97438 * 3 2 1 5 5 C 1.38868 * 119.92889 * 0.02562 * 4 3 2 6 6 N 1.39920 * 120.07366 * 179.97438 * 5 4 3 7 7 C 1.45750 * 117.94879 * 269.42894 * 6 5 4 8 8 C 1.52922 * 110.49143 * 160.92015 * 7 6 5 9 9 C 1.53348 * 108.67158 * 50.75227 * 8 7 6 10 10 C 1.53069 * 108.42705 * 292.47175 * 9 8 7 11 11 H 1.08999 * 109.39971 * 168.94767 * 10 9 8 12 12 N 1.46507 * 109.39906 * 288.76877 * 10 9 8 13 13 C 1.35315 * 125.86445 * 85.00311 * 12 10 9 14 14 C 1.35349 * 106.17386 * 179.97438 * 13 12 10 15 15 C 1.50699 * 126.75197 * 179.74015 * 14 13 12 16 16 C 1.50704 * 109.47081 * 124.99660 * 15 14 13 17 17 H 1.07999 * 120.00089 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99731 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99878 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99677 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47017 * 60.00709 * 20 18 16 22 22 H 1.48503 * 109.46672 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47219 * 299.99886 * 20 18 16 24 24 N 1.33775 * 106.49319 * 359.97438 * 14 13 12 25 25 N 1.28626 * 108.88829 * 0.02562 * 24 14 13 26 26 C 1.33360 * 117.94850 * 89.42658 * 6 5 4 27 27 O 1.21286 * 118.24377 * 2.22484 * 26 6 5 28 28 C 1.38874 * 119.85799 * 0.25321 * 5 4 3 29 29 C 1.38118 * 119.93070 * 359.47370 * 28 5 4 30 30 H 1.09001 * 109.46949 * 89.99753 * 1 2 3 31 31 H 1.08994 * 109.47027 * 210.00231 * 1 2 3 32 32 H 1.09002 * 109.47415 * 330.00564 * 1 2 3 33 33 H 1.07996 * 119.97147 * 359.97438 * 3 2 1 34 34 H 1.07999 * 120.03283 * 180.02562 * 4 3 2 35 35 H 1.09000 * 109.29674 * 40.61320 * 7 6 5 36 36 H 1.08993 * 109.30440 * 281.23348 * 7 6 5 37 37 H 1.09000 * 109.60280 * 290.99903 * 8 7 6 38 38 H 1.08992 * 109.74190 * 170.58931 * 8 7 6 39 39 H 1.08996 * 109.67277 * 172.73442 * 9 8 7 40 40 H 1.09002 * 109.70062 * 52.21986 * 9 8 7 41 41 H 1.07999 * 126.91408 * 359.93779 * 13 12 10 42 42 H 1.08996 * 109.46987 * 244.99541 * 15 14 13 43 43 H 1.09002 * 109.47187 * 4.99589 * 15 14 13 44 44 H 0.97009 * 119.99740 * 179.97438 * 19 18 16 45 45 H 1.08002 * 120.03747 * 179.74613 * 28 5 4 46 46 H 1.07994 * 119.96629 * 180.27345 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5781 1.2018 0.0005 5 6 4.2739 0.0001 0.0005 6 7 5.6731 0.0000 0.0005 7 6 6.3562 -0.0129 -1.2869 8 6 7.8030 0.4569 -1.1300 9 6 8.4574 -0.3397 0.0053 10 6 7.7919 0.0618 1.3240 11 1 8.1012 -0.6271 2.1101 12 7 8.2009 1.4226 1.6810 13 6 7.6228 2.5648 1.2427 14 6 8.3106 3.5796 1.8163 15 6 8.0572 5.0545 1.6385 16 6 7.8609 5.6967 2.9876 17 1 7.9139 5.0968 3.8841 18 6 7.6136 7.0502 3.0774 19 7 7.5496 7.7807 1.9857 20 14 7.3696 7.8460 4.7497 21 1 8.5886 7.6486 5.5744 22 1 7.1212 9.2996 4.5744 23 1 6.2056 7.2229 5.4293 24 7 9.2628 3.0159 2.5680 25 7 9.1711 1.7370 2.4661 26 6 6.2981 0.0117 1.1785 27 8 5.6240 -0.0196 2.1863 28 6 3.5780 -1.2018 -0.0053 29 6 2.1969 -1.1984 -0.0001 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 1.6552 2.1327 -0.0004 34 1 4.1163 2.1382 0.0010 35 1 5.8352 0.6500 -1.9778 36 1 6.3480 -1.0259 -1.6890 37 1 7.8182 1.5194 -0.8873 38 1 8.3483 0.2860 -2.0581 39 1 9.5223 -0.1114 0.0472 40 1 8.3173 -1.4069 -0.1664 41 1 6.7822 2.6496 0.5700 42 1 8.9110 5.5122 1.1390 43 1 7.1620 5.1990 1.0335 44 1 7.3753 8.7329 2.0489 45 1 4.1163 -2.1381 -0.0095 46 1 1.6552 -2.1327 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881314808.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:20 Heat of formation + Delta-G solvation = 74.579332 kcal Electronic energy + Delta-G solvation = -29507.360105 eV Core-core repulsion = 25591.400426 eV Total energy + Delta-G solvation = -3915.959680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.38613 -42.23242 -39.95380 -37.97390 -36.71897 -35.52188 -33.99164 -32.93517 -32.14766 -31.98233 -30.59742 -29.43316 -27.62649 -26.04097 -25.57364 -24.13129 -23.78563 -23.28506 -22.42330 -21.88533 -20.24207 -18.86695 -18.52774 -18.27256 -17.51399 -17.27694 -16.93941 -16.60897 -16.47252 -16.03277 -15.75563 -15.65164 -15.12183 -14.74626 -14.61734 -14.58464 -14.51780 -14.45106 -14.23409 -13.90796 -13.76763 -13.11178 -12.98598 -12.94199 -12.70696 -12.66413 -12.58405 -12.49552 -12.39015 -12.28446 -12.03143 -11.97716 -11.78808 -11.57037 -11.27120 -10.87192 -10.62263 -10.14139 -9.98324 -9.95959 -9.57089 -8.22394 -6.31160 0.16165 0.38138 0.48233 0.66262 1.37444 1.40984 1.48294 1.55593 1.62609 1.77011 2.41653 2.64495 2.92077 3.10175 3.33072 3.47157 3.51475 3.69999 3.85945 3.94896 3.96742 3.99835 4.09538 4.20734 4.28824 4.39772 4.41537 4.43243 4.53539 4.58988 4.67568 4.77570 4.85071 4.87601 4.90032 5.05224 5.07501 5.12460 5.18185 5.30932 5.33485 5.43165 5.46212 5.46666 5.57041 5.61331 5.72193 5.93969 6.03922 6.16925 6.72911 6.75645 7.35300 7.54342 8.88370 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010024 B = 0.003495 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.658196 B = 8009.504736 C = 9888.676532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.084 4.084 3 C -0.123 4.123 4 C -0.123 4.123 5 C 0.104 3.896 6 N -0.543 5.543 7 C 0.107 3.893 8 C -0.145 4.145 9 C -0.126 4.126 10 C 0.134 3.866 11 H 0.148 0.852 12 N -0.273 5.273 13 C -0.051 4.051 14 C 0.006 3.994 15 C 0.105 3.895 16 C -0.530 4.530 17 H 0.041 0.959 18 C 0.013 3.987 19 N -0.923 5.923 20 Si 0.959 3.041 21 H -0.274 1.274 22 H -0.271 1.271 23 H -0.273 1.273 24 N -0.296 5.296 25 N -0.102 5.102 26 C 0.515 3.485 27 O -0.563 6.563 28 C -0.107 4.107 29 C -0.116 4.116 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.136 0.864 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.054 0.946 38 H 0.132 0.868 39 H 0.093 0.907 40 H 0.138 0.862 41 H 0.196 0.804 42 H 0.016 0.984 43 H 0.029 0.971 44 H 0.268 0.732 45 H 0.139 0.861 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.870 -24.192 -14.835 30.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.084 4.084 3 C -0.142 4.142 4 C -0.142 4.142 5 C 0.015 3.985 6 N -0.272 5.272 7 C -0.013 4.013 8 C -0.183 4.183 9 C -0.164 4.164 10 C 0.029 3.971 11 H 0.166 0.834 12 N -0.070 5.070 13 C -0.200 4.200 14 C -0.131 4.131 15 C 0.067 3.933 16 C -0.568 4.568 17 H 0.060 0.940 18 C -0.186 4.186 19 N -0.563 5.563 20 Si 0.784 3.216 21 H -0.199 1.199 22 H -0.196 1.196 23 H -0.198 1.198 24 N -0.163 5.163 25 N -0.081 5.081 26 C 0.301 3.699 27 O -0.440 6.440 28 C -0.126 4.126 29 C -0.134 4.134 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.154 0.846 34 H 0.130 0.870 35 H 0.112 0.888 36 H 0.128 0.872 37 H 0.073 0.927 38 H 0.150 0.850 39 H 0.111 0.889 40 H 0.156 0.844 41 H 0.213 0.787 42 H 0.035 0.965 43 H 0.048 0.952 44 H 0.077 0.923 45 H 0.157 0.843 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.066 -24.601 -13.492 29.809 hybrid contribution -0.722 1.366 0.477 1.617 sum -10.789 -23.234 -13.016 28.734 Atomic orbital electron populations 1.20869 0.88964 1.03706 1.03529 1.20368 0.97848 0.92698 0.97482 1.21181 0.93135 0.99149 1.00706 1.21401 0.95439 0.97339 1.00066 1.17663 0.82310 0.93911 1.04603 1.44906 1.04470 1.71132 1.06707 1.21946 0.92448 1.04862 0.82028 1.22090 0.94851 0.99979 1.01354 1.22262 1.01154 1.03943 0.89011 1.21920 0.91190 0.79778 1.04183 0.83410 1.47161 1.21721 1.07445 1.30626 1.23242 1.04478 0.84783 1.07542 1.22634 0.94581 0.99018 0.96909 1.17381 0.96327 0.82850 0.96791 1.21222 1.49092 0.93751 0.92739 0.94050 1.25741 0.94747 0.97498 1.00587 1.70018 1.49938 1.07096 1.29216 0.85595 0.78744 0.77581 0.79697 1.19894 1.19585 1.19837 1.74993 1.22651 0.98644 1.20008 1.78115 1.08529 1.09824 1.11612 1.19905 0.89614 0.76985 0.83387 1.90805 1.66484 1.49410 1.37278 1.21427 0.95023 0.97057 0.99074 1.21264 0.93262 0.98804 1.00076 0.89518 0.90204 0.91269 0.84607 0.86970 0.88790 0.87177 0.92738 0.85010 0.88879 0.84432 0.78738 0.96548 0.95237 0.92342 0.84290 0.82913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 71.24 0.71 -0.55 16 2 C -0.08 -1.43 5.88 -19.85 -0.12 -1.54 16 3 C -0.12 -2.56 9.69 22.25 0.22 -2.34 16 4 C -0.12 -2.98 9.97 22.39 0.22 -2.76 16 5 C 0.10 2.31 4.01 38.15 0.15 2.46 16 6 N -0.54 -10.89 2.85 -635.83 -1.81 -12.70 16 7 C 0.11 1.19 6.35 86.49 0.55 1.74 16 8 C -0.15 -1.74 5.96 30.68 0.18 -1.55 16 9 C -0.13 -1.67 5.67 30.73 0.17 -1.50 16 10 C 0.13 3.21 3.42 44.10 0.15 3.36 16 11 H 0.15 3.30 8.14 -2.39 -0.02 3.28 16 12 N -0.27 -9.51 3.20 -331.41 -1.06 -10.57 16 13 C -0.05 -1.98 8.79 83.49 0.73 -1.25 16 14 C 0.01 0.30 6.44 41.60 0.27 0.57 16 15 C 0.11 5.86 5.55 29.10 0.16 6.02 16 16 C -0.53 -32.44 9.09 25.60 0.23 -32.21 16 17 H 0.04 2.62 7.74 -2.91 -0.02 2.60 16 18 C 0.01 0.77 5.46 84.66 0.46 1.24 16 19 N -0.92 -55.98 13.29 21.45 0.28 -55.69 16 20 Si 0.96 46.87 29.54 68.60 2.03 48.89 16 21 H -0.27 -13.24 7.11 99.48 0.71 -12.54 16 22 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 23 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 24 N -0.30 -14.90 12.40 -48.60 -0.60 -15.51 16 25 N -0.10 -4.34 13.16 37.02 0.49 -3.85 16 26 C 0.52 13.82 5.98 87.71 0.52 14.35 16 27 O -0.56 -20.92 16.71 -3.05 -0.05 -20.98 16 28 C -0.11 -1.94 9.97 22.39 0.22 -1.72 16 29 C -0.12 -1.83 9.69 22.25 0.22 -1.61 16 30 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.70 8.08 -2.39 -0.02 0.68 16 32 H 0.07 0.77 8.08 -2.39 -0.02 0.75 16 33 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 34 H 0.11 2.92 8.06 -2.91 -0.02 2.90 16 35 H 0.09 0.96 8.08 -2.39 -0.02 0.94 16 36 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.05 1.02 5.69 -2.39 -0.01 1.01 16 38 H 0.13 0.76 8.14 -2.39 -0.02 0.75 16 39 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.14 0.79 8.13 -2.39 -0.02 0.77 16 41 H 0.20 6.56 7.53 -2.91 -0.02 6.54 16 42 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.03 1.63 8.12 -2.39 -0.02 1.61 16 44 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 45 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 46 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -84.08 385.24 5.33 -78.75 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 0.99 Total: 8.95 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: 5.07 Total: -17.30 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -2.70 Total: -98.32 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.05 Total: -20.98 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.89 kcal Total: -84.08 5.33 -78.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881314808.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.330 kcal (2) G-P(sol) polarization free energy of solvation -84.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds