Wall clock time and date at job start Tue Mar 31 2020 23:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38064 * 126.29154 * 2 1 4 4 C 1.47400 * 126.41908 * 0.02562 * 3 2 1 5 5 O 1.21620 * 119.99995 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00186 * 179.97438 * 4 3 2 7 7 C 1.39867 * 120.00071 * 174.72618 * 6 4 3 8 8 C 1.38965 * 119.94518 * 146.61873 * 7 6 4 9 9 C 1.38166 * 119.81229 * 180.12579 * 8 7 6 10 10 C 1.37993 * 120.17202 * 359.94956 * 9 8 7 11 11 C 1.39033 * 120.59872 * 359.83486 * 10 9 8 12 12 C 1.38554 * 119.94397 * 326.34561 * 7 6 4 13 13 N 1.40053 * 110.95615 * 180.48493 * 11 10 9 14 14 C 1.46904 * 110.99987 * 103.48372 * 13 11 10 15 15 C 1.47898 * 107.88684 * 341.66434 * 13 11 10 16 16 C 1.51602 * 131.47416 * 179.57898 * 10 9 8 17 17 C 1.41296 * 107.16615 * 179.97438 * 3 2 1 18 18 N 1.30446 * 108.02302 * 359.71777 * 17 3 2 19 19 N 1.34264 * 126.29125 * 179.97438 * 2 1 3 20 20 C 1.46497 * 125.75672 * 0.02562 * 19 2 1 21 21 C 1.50695 * 109.47124 * 89.99700 * 20 19 2 22 22 H 1.08001 * 120.00243 * 0.02562 * 21 20 19 23 23 C 1.37876 * 120.00144 * 179.72223 * 21 20 19 24 24 N 1.31513 * 119.99874 * 0.28325 * 23 21 20 25 25 Si 1.86803 * 120.00274 * 180.27873 * 23 21 20 26 26 H 1.48503 * 109.46874 * 0.02562 * 25 23 21 27 27 H 1.48490 * 109.47012 * 120.00427 * 25 23 21 28 28 H 1.48501 * 109.47032 * 240.00675 * 25 23 21 29 29 H 1.09001 * 109.46962 * 270.03051 * 1 2 3 30 30 H 1.09003 * 109.47207 * 30.02636 * 1 2 3 31 31 H 1.08996 * 109.47086 * 150.02307 * 1 2 3 32 32 H 0.96998 * 120.00081 * 354.72877 * 6 4 3 33 33 H 1.07998 * 120.09124 * 0.10176 * 8 7 6 34 34 H 1.07996 * 119.91415 * 179.97438 * 9 8 7 35 35 H 1.07996 * 119.92855 * 0.02562 * 12 7 6 36 36 H 1.09003 * 109.47301 * 299.88959 * 14 13 11 37 37 H 1.09000 * 109.46921 * 59.88488 * 14 13 11 38 38 H 1.09001 * 109.46815 * 179.89112 * 14 13 11 39 39 H 1.08999 * 110.77358 * 268.99196 * 15 13 11 40 40 H 1.09005 * 110.77544 * 145.57169 * 15 13 11 41 41 H 1.08994 * 110.74596 * 314.60155 * 16 10 9 42 42 H 1.09002 * 110.73909 * 77.75323 * 16 10 9 43 43 H 1.08000 * 125.99154 * 180.02562 * 17 3 2 44 44 H 1.09003 * 109.46798 * 330.00144 * 20 19 2 45 45 H 1.08999 * 109.47025 * 210.00544 * 20 19 2 46 46 H 0.96996 * 120.00214 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1128 0.0000 4 6 1.8861 2.5202 0.0005 5 8 0.6997 2.7878 0.0015 6 7 2.8003 3.5106 0.0010 7 6 2.3883 4.8426 -0.1098 8 6 3.0977 5.8445 0.5413 9 6 2.6868 7.1592 0.4321 10 6 1.5760 7.4782 -0.3219 11 6 0.8600 6.4861 -0.9821 12 6 1.2770 5.1616 -0.8733 13 7 -0.2163 7.0332 -1.6918 14 6 0.0782 7.0950 -3.1297 15 6 -0.4812 8.3822 -1.1466 16 6 0.9038 8.8069 -0.6069 17 6 3.6591 0.6499 0.0006 18 7 3.6341 -0.6543 0.0071 19 7 2.3017 -1.0822 0.0005 20 6 1.8501 -2.4758 0.0006 21 6 1.6958 -2.9539 -1.4202 22 1 1.9127 -2.2866 -2.2411 23 6 1.2835 -4.2453 -1.6720 24 7 1.0197 -5.0581 -0.6724 25 14 1.0997 -4.8404 -3.4332 26 1 1.4553 -3.7415 -4.3666 27 1 2.0037 -5.9959 -3.6621 28 1 -0.3058 -5.2568 -3.6707 29 1 -0.3633 0.0005 1.0277 30 1 -0.3634 0.8898 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 3.7439 3.2996 0.0781 33 1 3.9675 5.5962 1.1314 34 1 3.2367 7.9391 0.9378 35 1 0.7302 4.3810 -1.3814 36 1 0.9566 7.7191 -3.2942 37 1 0.2714 6.0899 -3.5045 38 1 -0.7748 7.5219 -3.6572 39 1 -1.2131 8.3364 -0.3401 40 1 -0.8137 9.0590 -1.9338 41 1 0.7993 9.3906 0.3076 42 1 1.4591 9.3669 -1.3593 43 1 4.5451 1.2675 0.0012 44 1 0.8913 -2.5470 0.5141 45 1 2.5846 -3.0957 0.5149 46 1 0.7294 -5.9665 -0.8496 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889873063.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:59 Heat of formation + Delta-G solvation = 78.143074 kcal Electronic energy + Delta-G solvation = -28446.546558 eV Core-core repulsion = 24530.741414 eV Total energy + Delta-G solvation = -3915.805144 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.15051 -40.74975 -39.30073 -36.87709 -34.31149 -33.86881 -32.24316 -31.97818 -31.15198 -30.06224 -28.66025 -27.16836 -26.62890 -26.02245 -23.86550 -23.29474 -22.23872 -21.26581 -21.09701 -19.85639 -19.10216 -17.54127 -17.03240 -16.76562 -16.24296 -15.95088 -15.57813 -15.16982 -14.96517 -14.54401 -14.50096 -14.28222 -14.05627 -13.77576 -13.56149 -13.29888 -13.19496 -12.83991 -12.63737 -12.53146 -12.42058 -12.21504 -12.10410 -11.89940 -11.82271 -11.52343 -11.43889 -11.33820 -11.12728 -10.93899 -10.40032 -10.27743 -10.15890 -9.94643 -9.59685 -9.38464 -8.74242 -8.64502 -8.35911 -8.06247 -7.81068 -6.36368 -4.44487 1.12475 1.31388 2.11695 2.71679 3.00372 3.15546 3.23708 3.28050 3.37863 3.47937 3.63742 3.91592 4.22278 4.36727 4.55287 4.71425 4.90169 4.91410 4.98042 5.04237 5.13907 5.16733 5.18840 5.24574 5.32619 5.42225 5.49288 5.55890 5.62875 5.67755 5.70627 5.77441 5.87918 6.06511 6.14620 6.21643 6.31206 6.37053 6.47049 6.54172 6.73166 6.73836 6.77272 6.86447 7.09247 7.16095 7.52181 7.55069 7.72904 7.74345 8.30189 8.43451 8.61501 9.22861 10.71866 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018753 B = 0.002306 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.708549 B =12139.497785 C =12974.715711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.171 3.829 3 C -0.335 4.335 4 C 0.603 3.397 5 O -0.531 6.531 6 N -0.676 5.676 7 C 0.180 3.820 8 C -0.163 4.163 9 C -0.069 4.069 10 C -0.166 4.166 11 C 0.108 3.892 12 C -0.113 4.113 13 N -0.496 5.496 14 C 0.028 3.972 15 C 0.049 3.951 16 C -0.105 4.105 17 C 0.059 3.941 18 N -0.293 5.293 19 N -0.312 5.312 20 C 0.250 3.750 21 C -0.541 4.541 22 H 0.066 0.934 23 C 0.067 3.933 24 N -0.889 5.889 25 Si 0.908 3.092 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.279 1.279 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.410 0.590 33 H 0.128 0.872 34 H 0.122 0.878 35 H 0.139 0.861 36 H 0.032 0.968 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.177 0.823 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.686 25.748 0.543 25.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.034 3.966 3 C -0.351 4.351 4 C 0.395 3.605 5 O -0.408 6.408 6 N -0.321 5.321 7 C 0.084 3.916 8 C -0.184 4.184 9 C -0.088 4.088 10 C -0.170 4.170 11 C 0.011 3.989 12 C -0.135 4.135 13 N -0.213 5.213 14 C -0.118 4.118 15 C -0.078 4.078 16 C -0.143 4.143 17 C -0.128 4.128 18 N -0.113 5.113 19 N -0.089 5.089 20 C 0.133 3.867 21 C -0.579 4.579 22 H 0.084 0.916 23 C -0.137 4.137 24 N -0.526 5.526 25 Si 0.735 3.265 26 H -0.195 1.195 27 H -0.206 1.206 28 H -0.205 1.205 29 H 0.097 0.903 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.246 0.754 33 H 0.146 0.854 34 H 0.140 0.860 35 H 0.157 0.843 36 H 0.051 0.949 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.193 0.807 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.968 24.064 0.582 24.091 hybrid contribution 0.737 0.551 -0.870 1.266 sum 1.705 24.615 -0.288 24.676 Atomic orbital electron populations 1.20642 0.86696 1.04988 1.03429 1.21490 0.95019 0.86421 0.93692 1.19543 0.93334 0.91958 1.30240 1.17437 0.84950 0.83907 0.74186 1.90743 1.16431 1.84016 1.49624 1.43354 1.10869 1.03618 1.74237 1.17362 0.95399 0.83696 0.95103 1.20784 1.02828 0.92211 1.02574 1.20078 0.95298 0.95631 0.97821 1.20898 0.97268 0.95257 1.03557 1.19273 0.90139 0.93038 0.96408 1.20416 0.98099 0.94525 1.00500 1.60095 1.36873 1.20598 1.03733 1.22475 1.00297 1.02669 0.86387 1.23176 0.96683 0.87812 1.00080 1.21605 0.95932 0.94934 1.01869 1.23737 0.96238 0.92695 1.00174 1.77152 0.98659 1.12191 1.23283 1.49410 1.02449 1.08362 1.48670 1.19887 0.96487 0.70792 0.99530 1.21285 1.47593 0.98083 0.90971 0.91570 1.24929 0.94411 0.95983 0.98339 1.69919 1.44489 1.07110 1.31091 0.86267 0.77994 0.78868 0.83398 1.19500 1.20554 1.20506 0.90341 0.88559 0.89748 0.75405 0.85380 0.85983 0.84290 0.94910 0.90787 0.90742 0.89258 0.89818 0.89841 0.90500 0.80651 0.92473 0.92413 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.78 9.34 36.01 0.34 -1.44 16 2 C 0.17 3.43 7.01 -81.59 -0.57 2.85 16 3 C -0.34 -5.97 6.13 -105.07 -0.64 -6.61 16 4 C 0.60 9.90 7.54 -12.53 -0.09 9.81 16 5 O -0.53 -10.00 12.54 5.26 0.07 -9.94 16 6 N -0.68 -8.63 5.32 -10.90 -0.06 -8.69 16 7 C 0.18 2.32 6.26 -83.81 -0.52 1.80 16 8 C -0.16 -1.70 9.97 -39.34 -0.39 -2.09 16 9 C -0.07 -0.68 10.02 -39.70 -0.40 -1.08 16 10 C -0.17 -1.79 6.23 -103.97 -0.65 -2.44 16 11 C 0.11 1.37 5.58 -83.42 -0.47 0.91 16 12 C -0.11 -1.62 8.68 -39.08 -0.34 -1.96 16 13 N -0.50 -5.60 5.33 -176.86 -0.94 -6.54 16 14 C 0.03 0.25 9.28 60.07 0.56 0.81 16 15 C 0.05 0.41 7.00 -2.44 -0.02 0.39 16 16 C -0.11 -0.83 6.97 -26.60 -0.19 -1.02 16 17 C 0.06 0.99 11.51 -16.98 -0.20 0.79 16 18 N -0.29 -6.16 12.50 30.86 0.39 -5.78 16 19 N -0.31 -6.94 3.56 -57.77 -0.21 -7.14 16 20 C 0.25 6.14 5.78 -5.20 -0.03 6.11 16 21 C -0.54 -14.41 9.39 -34.44 -0.32 -14.73 16 22 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 23 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 24 N -0.89 -24.38 13.29 55.43 0.74 -23.64 16 25 Si 0.91 20.66 29.54 -169.99 -5.02 15.64 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.10 1.69 6.50 -51.93 -0.34 1.35 16 31 H 0.08 1.56 7.70 -51.93 -0.40 1.16 16 32 H 0.41 3.94 7.79 -40.82 -0.32 3.62 16 33 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.14 2.28 6.41 -52.49 -0.34 1.94 16 36 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.51 7.76 -51.93 -0.40 0.10 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.18 2.04 7.51 -52.49 -0.39 1.65 16 44 H 0.06 1.39 7.62 -51.93 -0.40 1.00 16 45 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 46 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 384.17 15.07 5.79 5.79 Total: -1.00 -31.72 384.17 -9.64 -41.36 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -6.36 Total: 5.14 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -4.03 Total: -6.20 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.08 Total: -51.79 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.07 Total: -9.94 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.72 -9.64 -41.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889873063.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.502 kcal (2) G-P(sol) polarization free energy of solvation -31.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds