Wall clock time and date at job start Tue Mar 31 2020 23:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38064 * 126.29154 * 2 1 4 4 C 1.47400 * 126.41908 * 0.02562 * 3 2 1 5 5 O 1.21620 * 119.99995 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00186 * 179.97438 * 4 3 2 7 7 C 1.39867 * 120.00071 * 174.72618 * 6 4 3 8 8 C 1.38965 * 119.94518 * 146.61873 * 7 6 4 9 9 C 1.38166 * 119.81229 * 180.12579 * 8 7 6 10 10 C 1.37993 * 120.17202 * 359.94956 * 9 8 7 11 11 C 1.39033 * 120.59872 * 359.83486 * 10 9 8 12 12 C 1.38554 * 119.94397 * 326.34561 * 7 6 4 13 13 N 1.40053 * 110.95615 * 180.48493 * 11 10 9 14 14 C 1.46904 * 110.99987 * 103.48372 * 13 11 10 15 15 C 1.47898 * 107.88684 * 341.66434 * 13 11 10 16 16 C 1.51602 * 131.47416 * 179.57898 * 10 9 8 17 17 C 1.41296 * 107.16615 * 179.97438 * 3 2 1 18 18 N 1.30446 * 108.02302 * 359.71777 * 17 3 2 19 19 N 1.34264 * 126.29125 * 179.97438 * 2 1 3 20 20 C 1.46497 * 125.75672 * 0.02562 * 19 2 1 21 21 C 1.50695 * 109.47124 * 89.99700 * 20 19 2 22 22 H 1.08001 * 120.00243 * 0.02562 * 21 20 19 23 23 C 1.37876 * 120.00144 * 179.72223 * 21 20 19 24 24 N 1.31513 * 119.99874 * 0.28325 * 23 21 20 25 25 Si 1.86803 * 120.00274 * 180.27873 * 23 21 20 26 26 H 1.48503 * 109.46874 * 0.02562 * 25 23 21 27 27 H 1.48490 * 109.47012 * 120.00427 * 25 23 21 28 28 H 1.48501 * 109.47032 * 240.00675 * 25 23 21 29 29 H 1.09001 * 109.46962 * 270.03051 * 1 2 3 30 30 H 1.09003 * 109.47207 * 30.02636 * 1 2 3 31 31 H 1.08996 * 109.47086 * 150.02307 * 1 2 3 32 32 H 0.96998 * 120.00081 * 354.72877 * 6 4 3 33 33 H 1.07998 * 120.09124 * 0.10176 * 8 7 6 34 34 H 1.07996 * 119.91415 * 179.97438 * 9 8 7 35 35 H 1.07996 * 119.92855 * 0.02562 * 12 7 6 36 36 H 1.09003 * 109.47301 * 299.88959 * 14 13 11 37 37 H 1.09000 * 109.46921 * 59.88488 * 14 13 11 38 38 H 1.09001 * 109.46815 * 179.89112 * 14 13 11 39 39 H 1.08999 * 110.77358 * 268.99196 * 15 13 11 40 40 H 1.09005 * 110.77544 * 145.57169 * 15 13 11 41 41 H 1.08994 * 110.74596 * 314.60155 * 16 10 9 42 42 H 1.09002 * 110.73909 * 77.75323 * 16 10 9 43 43 H 1.08000 * 125.99154 * 180.02562 * 17 3 2 44 44 H 1.09003 * 109.46798 * 330.00144 * 20 19 2 45 45 H 1.08999 * 109.47025 * 210.00544 * 20 19 2 46 46 H 0.96996 * 120.00214 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1128 0.0000 4 6 1.8861 2.5202 0.0005 5 8 0.6997 2.7878 0.0015 6 7 2.8003 3.5106 0.0010 7 6 2.3883 4.8426 -0.1098 8 6 3.0977 5.8445 0.5413 9 6 2.6868 7.1592 0.4321 10 6 1.5760 7.4782 -0.3219 11 6 0.8600 6.4861 -0.9821 12 6 1.2770 5.1616 -0.8733 13 7 -0.2163 7.0332 -1.6918 14 6 0.0782 7.0950 -3.1297 15 6 -0.4812 8.3822 -1.1466 16 6 0.9038 8.8069 -0.6069 17 6 3.6591 0.6499 0.0006 18 7 3.6341 -0.6543 0.0071 19 7 2.3017 -1.0822 0.0005 20 6 1.8501 -2.4758 0.0006 21 6 1.6958 -2.9539 -1.4202 22 1 1.9127 -2.2866 -2.2411 23 6 1.2835 -4.2453 -1.6720 24 7 1.0197 -5.0581 -0.6724 25 14 1.0997 -4.8404 -3.4332 26 1 1.4553 -3.7415 -4.3666 27 1 2.0037 -5.9959 -3.6621 28 1 -0.3058 -5.2568 -3.6707 29 1 -0.3633 0.0005 1.0277 30 1 -0.3634 0.8898 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 3.7439 3.2996 0.0781 33 1 3.9675 5.5962 1.1314 34 1 3.2367 7.9391 0.9378 35 1 0.7302 4.3810 -1.3814 36 1 0.9566 7.7191 -3.2942 37 1 0.2714 6.0899 -3.5045 38 1 -0.7748 7.5219 -3.6572 39 1 -1.2131 8.3364 -0.3401 40 1 -0.8137 9.0590 -1.9338 41 1 0.7993 9.3906 0.3076 42 1 1.4591 9.3669 -1.3593 43 1 4.5451 1.2675 0.0012 44 1 0.8913 -2.5470 0.5141 45 1 2.5846 -3.0957 0.5149 46 1 0.7294 -5.9665 -0.8496 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889873063.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:58 Heat of formation + Delta-G solvation = 58.125867 kcal Electronic energy + Delta-G solvation = -28447.414570 eV Core-core repulsion = 24530.741414 eV Total energy + Delta-G solvation = -3916.673156 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.44669 -41.78616 -40.46457 -37.86171 -35.86700 -35.27045 -33.84886 -33.01903 -32.59116 -30.88098 -29.84318 -28.75997 -28.02254 -26.77514 -25.47669 -24.52260 -23.38419 -22.21878 -21.97293 -21.15933 -20.57223 -18.89522 -18.69998 -18.11140 -17.19729 -16.83678 -16.69256 -16.46070 -16.29644 -16.18397 -15.61535 -15.55293 -15.17547 -14.81606 -14.70577 -14.38815 -14.27442 -14.11610 -13.99299 -13.67205 -13.62691 -13.59166 -13.16527 -13.10687 -12.98285 -12.97395 -12.74021 -12.63789 -12.35624 -12.22314 -12.05804 -11.85504 -11.75432 -11.20739 -10.78695 -10.77744 -10.30335 -10.28860 -9.61916 -9.22345 -8.69795 -8.39783 -6.56188 0.19302 0.42813 0.70568 1.29451 1.35105 1.37489 1.48053 1.60217 2.15376 2.31210 2.39608 2.69742 2.90903 2.92652 3.68007 3.69248 3.70171 3.88716 4.02680 4.11018 4.15972 4.17886 4.26112 4.36773 4.46186 4.50191 4.53086 4.62137 4.68699 4.74530 4.77208 4.79113 4.87539 4.89027 4.96437 5.04779 5.10337 5.13358 5.32125 5.39030 5.45702 5.47856 5.55957 5.63577 5.72765 5.84246 5.99687 6.00397 6.29714 6.49330 6.52984 6.80060 7.15139 7.21942 8.68333 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018753 B = 0.002306 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.708549 B =12139.497785 C =12974.715711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.151 3.849 3 C -0.331 4.331 4 C 0.605 3.395 5 O -0.560 6.560 6 N -0.657 5.657 7 C 0.158 3.842 8 C -0.154 4.154 9 C -0.067 4.067 10 C -0.168 4.168 11 C 0.090 3.910 12 C -0.141 4.141 13 N -0.522 5.522 14 C 0.030 3.970 15 C 0.046 3.954 16 C -0.099 4.099 17 C 0.083 3.917 18 N -0.333 5.333 19 N -0.337 5.337 20 C 0.267 3.733 21 C -0.556 4.556 22 H 0.051 0.949 23 C 0.024 3.976 24 N -0.916 5.916 25 Si 0.971 3.029 26 H -0.273 1.273 27 H -0.272 1.272 28 H -0.269 1.269 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.426 0.574 33 H 0.158 0.842 34 H 0.156 0.844 35 H 0.105 0.895 36 H 0.041 0.959 37 H 0.054 0.946 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.231 0.769 44 H 0.051 0.949 45 H 0.034 0.966 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.979 28.974 0.442 29.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.015 3.985 3 C -0.347 4.347 4 C 0.396 3.604 5 O -0.439 6.439 6 N -0.303 5.303 7 C 0.063 3.937 8 C -0.174 4.174 9 C -0.086 4.086 10 C -0.172 4.172 11 C -0.007 4.007 12 C -0.163 4.163 13 N -0.239 5.239 14 C -0.115 4.115 15 C -0.080 4.080 16 C -0.137 4.137 17 C -0.104 4.104 18 N -0.153 5.153 19 N -0.114 5.114 20 C 0.148 3.852 21 C -0.594 4.594 22 H 0.069 0.931 23 C -0.177 4.177 24 N -0.554 5.554 25 Si 0.795 3.205 26 H -0.198 1.198 27 H -0.198 1.198 28 H -0.194 1.194 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.090 0.910 32 H 0.265 0.735 33 H 0.176 0.824 34 H 0.174 0.826 35 H 0.123 0.877 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.126 0.874 41 H 0.120 0.880 42 H 0.111 0.889 43 H 0.247 0.753 44 H 0.068 0.932 45 H 0.052 0.948 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.287 27.330 0.486 27.430 hybrid contribution 0.337 -0.252 -0.815 0.918 sum 2.624 27.078 -0.329 27.207 Atomic orbital electron populations 1.20595 0.85952 1.04268 1.04132 1.21942 0.95900 0.86710 0.93970 1.19770 0.93589 0.92270 1.29052 1.17256 0.84989 0.83930 0.74195 1.90737 1.17845 1.84332 1.51033 1.43057 1.11079 1.03159 1.73002 1.17531 0.95945 0.83874 0.96311 1.21113 1.02950 0.91776 1.01594 1.20517 0.94906 0.96190 0.97005 1.21359 0.97100 0.96135 1.02561 1.19460 0.91073 0.92927 0.97243 1.20333 0.99229 0.94730 1.02025 1.60078 1.36846 1.22425 1.04585 1.22470 1.01497 1.01907 0.85646 1.23307 0.97146 0.86770 1.00769 1.21658 0.95165 0.93684 1.03143 1.24559 0.97513 0.91635 0.96735 1.77106 0.98240 1.14373 1.25559 1.49129 1.03392 1.07757 1.51084 1.19389 0.95364 0.72264 0.98170 1.21414 1.48036 0.98380 0.91533 0.93060 1.25725 0.93816 0.95949 1.02254 1.69996 1.44861 1.07558 1.32965 0.85303 0.78469 0.78204 0.78505 1.19764 1.19769 1.19361 0.88961 0.88462 0.91011 0.73471 0.82408 0.82605 0.87732 0.94008 0.92658 0.88890 0.89650 0.87431 0.87952 0.88896 0.75315 0.93151 0.94839 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.41 9.34 71.24 0.67 -2.75 16 2 C 0.15 6.21 7.01 42.15 0.30 6.51 16 3 C -0.33 -11.73 6.13 -20.15 -0.12 -11.86 16 4 C 0.61 19.79 7.54 86.66 0.65 20.44 16 5 O -0.56 -21.74 12.54 -4.09 -0.05 -21.79 16 6 N -0.66 -15.86 5.32 -306.64 -1.63 -17.49 16 7 C 0.16 3.90 6.26 38.11 0.24 4.14 16 8 C -0.15 -2.73 9.97 22.43 0.22 -2.51 16 9 C -0.07 -1.08 10.02 22.19 0.22 -0.86 16 10 C -0.17 -3.20 6.23 -19.44 -0.12 -3.32 16 11 C 0.09 2.23 5.58 38.27 0.21 2.45 16 12 C -0.14 -4.12 8.68 22.60 0.20 -3.92 16 13 N -0.52 -11.48 5.33 -713.46 -3.80 -15.28 16 14 C 0.03 0.54 9.28 127.69 1.19 1.72 16 15 C 0.05 0.67 7.00 86.65 0.61 1.27 16 16 C -0.10 -1.23 6.97 30.68 0.21 -1.02 16 17 C 0.08 2.66 11.51 85.65 0.99 3.65 16 18 N -0.33 -14.10 12.50 -56.27 -0.70 -14.81 16 19 N -0.34 -15.49 3.56 -336.69 -1.20 -16.69 16 20 C 0.27 13.76 5.78 85.63 0.50 14.25 16 21 C -0.56 -30.65 9.39 25.60 0.24 -30.41 16 22 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 23 C 0.02 1.30 5.46 84.65 0.46 1.76 16 24 N -0.92 -51.24 13.29 21.45 0.28 -50.95 16 25 Si 0.97 42.81 29.54 68.60 2.03 44.84 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 28 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 29 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 30 H 0.10 3.58 6.50 -2.39 -0.02 3.57 16 31 H 0.07 2.82 7.70 -2.39 -0.02 2.80 16 32 H 0.43 6.99 7.79 -92.71 -0.72 6.27 16 33 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 34 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 35 H 0.10 3.71 6.41 -2.91 -0.02 3.69 16 36 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.09 1.23 8.11 -2.39 -0.02 1.22 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.11 0.99 7.76 -2.38 -0.02 0.97 16 41 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.23 4.48 7.51 -2.91 -0.02 4.46 16 44 H 0.05 2.61 7.62 -2.39 -0.02 2.59 16 45 H 0.03 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -72.43 384.17 1.87 -70.56 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.29 Total: 22.06 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 6.65 Total: -0.45 kcal Atomic # 7 Polarization: -108.17 SS G_CDS: -7.05 Total: -115.22 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.05 Total: -21.79 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -72.43 1.87 -70.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889873063.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.686 kcal (2) G-P(sol) polarization free energy of solvation -72.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds