Wall clock time and date at job start Tue Mar 31 2020 23:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38041 * 126.29143 * 2 1 4 4 C 1.47437 * 126.41274 * 0.05672 * 3 2 1 5 5 O 1.21596 * 119.99932 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99400 * 179.97438 * 4 3 2 7 7 C 1.47023 * 125.65079 * 0.02591 * 6 4 3 8 8 C 1.54327 * 107.26799 * 178.90177 * 7 6 4 9 9 C 1.55159 * 102.94356 * 337.80814 * 8 7 6 10 10 H 1.09001 * 111.00172 * 277.42303 * 9 8 7 11 11 C 1.50702 * 111.00408 * 153.61710 * 9 8 7 12 12 C 1.38230 * 119.61449 * 323.56421 * 11 9 8 13 13 C 1.38634 * 119.15674 * 179.97438 * 12 11 9 14 14 C 1.38674 * 118.42256 * 359.97438 * 13 12 11 15 15 C 1.38184 * 119.16117 * 359.97438 * 14 13 12 16 16 N 1.31854 * 119.61902 * 143.29221 * 11 9 8 17 17 C 1.47425 * 125.64330 * 179.71349 * 6 4 3 18 18 C 1.41289 * 107.16882 * 180.02562 * 3 2 1 19 19 N 1.30440 * 108.02360 * 359.73989 * 18 3 2 20 20 N 1.34256 * 126.29084 * 180.02562 * 2 1 3 21 21 C 1.46503 * 125.75406 * 359.96393 * 20 2 1 22 22 C 1.50697 * 109.47626 * 89.99658 * 21 20 2 23 23 H 1.08001 * 119.99674 * 359.97438 * 22 21 20 24 24 C 1.37877 * 120.00225 * 179.97438 * 22 21 20 25 25 N 1.31518 * 119.99922 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99846 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47559 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47049 * 120.00659 * 26 24 22 29 29 H 1.48504 * 109.46910 * 240.00044 * 26 24 22 30 30 H 1.08998 * 109.47642 * 270.00283 * 1 2 3 31 31 H 1.09004 * 109.47227 * 30.00588 * 1 2 3 32 32 H 1.09005 * 109.46833 * 149.99786 * 1 2 3 33 33 H 1.08998 * 109.88236 * 298.31735 * 7 6 4 34 34 H 1.08990 * 109.88266 * 59.48723 * 7 6 4 35 35 H 1.09007 * 110.72059 * 96.16942 * 8 7 6 36 36 H 1.08999 * 110.71980 * 219.43973 * 8 7 6 37 37 H 1.07998 * 120.42178 * 0.02562 * 12 11 9 38 38 H 1.08002 * 120.78416 * 179.97438 * 13 12 11 39 39 H 1.07995 * 120.41608 * 180.02562 * 14 13 12 40 40 H 1.07999 * 119.61743 * 180.02562 * 15 14 13 41 41 H 1.08994 * 110.37070 * 323.00475 * 17 6 4 42 42 H 1.09003 * 110.36778 * 85.32552 * 17 6 4 43 43 H 1.08000 * 125.98163 * 180.02562 * 18 3 2 44 44 H 1.08999 * 109.46809 * 329.99236 * 21 20 2 45 45 H 1.08998 * 109.47146 * 210.00124 * 21 20 2 46 46 H 0.96993 * 119.99855 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 0.0012 5 8 0.6996 2.7877 0.0018 6 7 2.7999 3.5107 0.0015 7 6 4.2590 3.3300 0.0003 8 6 4.8947 4.7360 -0.0269 9 6 3.7603 5.6190 -0.6106 10 1 3.7414 5.5619 -1.6989 11 6 3.8964 7.0475 -0.1500 12 6 4.3433 7.3125 1.1310 13 6 4.4655 8.6300 1.5446 14 6 4.1327 9.6362 0.6502 15 6 3.6940 9.2946 -0.6148 16 7 3.5931 8.0300 -0.9753 17 6 2.5023 4.9545 -0.0033 18 6 3.6590 0.6498 -0.0006 19 7 3.6340 -0.6544 0.0047 20 7 2.3017 -1.0821 -0.0005 21 6 1.8500 -2.4758 -0.0004 22 6 1.6944 -2.9537 -1.4211 23 1 1.9098 -2.2858 -2.2420 24 6 1.2768 -4.2433 -1.6728 25 7 1.0140 -5.0564 -0.6731 26 14 1.0846 -4.8358 -3.4339 27 1 1.4394 -3.7368 -4.3674 28 1 1.9839 -5.9942 -3.6674 29 1 -0.3232 -5.2473 -3.6668 30 1 -0.3634 0.0001 1.0276 31 1 -0.3634 0.8900 -0.5139 32 1 -0.3633 -0.8900 -0.5139 33 1 4.5678 2.8010 0.9019 34 1 4.5623 2.7689 -0.8834 35 1 5.1565 5.0605 0.9803 36 1 5.7690 4.7513 -0.6776 37 1 4.5948 6.5035 1.8007 38 1 4.8116 8.8671 2.5398 39 1 4.2162 10.6736 0.9385 40 1 3.4332 10.0723 -1.3174 41 1 1.6285 5.1597 -0.6216 42 1 2.3408 5.3120 1.0137 43 1 4.5448 1.2676 -0.0004 44 1 0.8917 -2.5471 0.5141 45 1 2.5849 -3.0958 0.5131 46 1 0.7199 -5.9636 -0.8502 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890398329.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:48 Heat of formation + Delta-G solvation = 79.251005 kcal Electronic energy + Delta-G solvation = -28425.438996 eV Core-core repulsion = 24509.681895 eV Total energy + Delta-G solvation = -3915.757101 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.02177 -40.64310 -39.24361 -37.19651 -33.97958 -33.29134 -32.79159 -32.02363 -31.13586 -30.30383 -29.15646 -27.21916 -26.66128 -24.52327 -24.09433 -23.39047 -23.05982 -21.06925 -20.82559 -19.86868 -18.40570 -17.49897 -17.08060 -16.79440 -16.55924 -15.92151 -15.52931 -15.41096 -15.07920 -14.62946 -14.54220 -14.28114 -13.96029 -13.72769 -13.57172 -13.43838 -13.25372 -12.76515 -12.66870 -12.52012 -12.36563 -12.06905 -12.03632 -11.83203 -11.61053 -11.47215 -11.32281 -11.10164 -11.01042 -10.90565 -10.36335 -10.24494 -10.16355 -9.90383 -9.77656 -9.43487 -9.28578 -8.71333 -8.64966 -8.50513 -7.89366 -6.33413 -4.41161 0.70724 0.91100 2.19223 2.81603 3.00705 3.17416 3.25446 3.30022 3.38283 3.44134 3.81894 3.92596 4.17876 4.24884 4.41147 4.47755 4.52951 4.68227 4.75099 4.76072 5.00756 5.07202 5.08687 5.18459 5.23395 5.25431 5.37887 5.45507 5.50018 5.56143 5.64557 5.68584 5.77167 5.81215 5.82110 5.90717 5.97661 6.11409 6.29831 6.36308 6.54403 6.61465 6.80841 6.90972 7.18182 7.57199 7.64597 7.69727 7.77720 7.80063 8.38821 8.57786 8.65458 9.25907 10.74793 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027593 B = 0.002056 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.518029 B =13617.012584 C =13663.274794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.166 3.834 3 C -0.328 4.328 4 C 0.620 3.380 5 O -0.553 6.553 6 N -0.621 5.621 7 C 0.097 3.903 8 C -0.128 4.128 9 C -0.056 4.056 10 H 0.105 0.895 11 C 0.146 3.854 12 C -0.168 4.168 13 C -0.073 4.073 14 C -0.179 4.179 15 C 0.102 3.898 16 N -0.480 5.480 17 C 0.125 3.875 18 C 0.045 3.955 19 N -0.297 5.297 20 N -0.314 5.314 21 C 0.250 3.750 22 C -0.539 4.539 23 H 0.066 0.934 24 C 0.067 3.933 25 N -0.889 5.889 26 Si 0.908 3.092 27 H -0.271 1.271 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.156 0.844 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.185 0.815 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.925 26.084 4.737 27.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.029 3.971 3 C -0.344 4.344 4 C 0.413 3.587 5 O -0.432 6.432 6 N -0.356 5.356 7 C -0.026 4.026 8 C -0.166 4.166 9 C -0.076 4.076 10 H 0.124 0.876 11 C 0.008 3.992 12 C -0.187 4.187 13 C -0.099 4.099 14 C -0.199 4.199 15 C -0.055 4.055 16 N -0.189 5.189 17 C 0.002 3.998 18 C -0.142 4.142 19 N -0.117 5.117 20 N -0.090 5.090 21 C 0.133 3.867 22 C -0.578 4.578 23 H 0.084 0.916 24 C -0.137 4.137 25 N -0.527 5.527 26 Si 0.735 3.265 27 H -0.195 1.195 28 H -0.206 1.206 29 H -0.205 1.205 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.156 0.844 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.173 0.827 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.202 0.798 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.565 24.482 3.954 25.927 hybrid contribution -0.054 0.581 -0.009 0.584 sum 7.511 25.063 3.945 26.460 Atomic orbital electron populations 1.20616 0.86842 1.04860 1.03267 1.21455 0.94946 0.86474 0.94263 1.19574 0.93231 0.92129 1.29440 1.16981 0.84010 0.83218 0.74459 1.90700 1.16191 1.84084 1.52204 1.48099 1.06222 1.05434 1.75828 1.22335 0.80759 0.97095 1.02442 1.22899 0.97713 0.93697 1.02308 1.21214 0.95900 0.88300 1.02173 0.87642 1.20869 0.93920 0.94319 0.90127 1.22031 1.01614 0.97719 0.97367 1.21614 0.95914 0.92623 0.99752 1.22164 1.01637 1.00667 0.95436 1.22771 0.94857 0.93114 0.94766 1.67491 1.14683 1.00335 1.36402 1.21995 0.96969 0.80169 1.00666 1.24357 0.96909 0.92617 1.00273 1.77143 0.98624 1.12383 1.23542 1.49382 1.02537 1.08266 1.48850 1.19855 0.96421 0.70948 0.99446 1.21297 1.47317 0.98123 0.91043 0.91584 1.24931 0.94469 0.96005 0.98309 1.69924 1.44565 1.07141 1.31052 0.86270 0.77963 0.78843 0.83461 1.19505 1.20574 1.20549 0.90513 0.88644 0.89869 0.90479 0.90438 0.89915 0.89361 0.84354 0.84753 0.84812 0.82686 0.89957 0.91685 0.79831 0.92577 0.92489 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.81 9.34 36.01 0.34 -1.47 16 2 C 0.17 3.45 7.01 -81.60 -0.57 2.88 16 3 C -0.33 -6.19 6.09 -105.06 -0.64 -6.83 16 4 C 0.62 10.88 7.85 -12.51 -0.10 10.78 16 5 O -0.55 -11.05 15.10 5.28 0.08 -10.98 16 6 N -0.62 -8.27 3.33 -171.93 -0.57 -8.85 16 7 C 0.10 0.94 4.98 -3.06 -0.02 0.92 16 8 C -0.13 -0.91 6.27 -24.89 -0.16 -1.07 16 9 C -0.06 -0.51 3.39 -89.74 -0.30 -0.81 16 10 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 11 C 0.15 1.33 5.89 -82.58 -0.49 0.84 16 12 C -0.17 -1.22 8.99 -39.44 -0.35 -1.57 16 13 C -0.07 -0.45 10.18 -39.27 -0.40 -0.85 16 14 C -0.18 -1.09 10.11 -39.44 -0.40 -1.49 16 15 C 0.10 0.78 11.18 -17.55 -0.20 0.58 16 16 N -0.48 -4.88 10.27 -9.47 -0.10 -4.97 16 17 C 0.13 1.43 6.35 -2.65 -0.02 1.42 16 18 C 0.04 0.79 10.45 -16.98 -0.18 0.62 16 19 N -0.30 -6.43 12.50 30.86 0.39 -6.04 16 20 N -0.31 -7.16 3.56 -57.77 -0.21 -7.37 16 21 C 0.25 6.26 5.78 -5.19 -0.03 6.23 16 22 C -0.54 -14.59 9.39 -34.44 -0.32 -14.91 16 23 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 24 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 25 N -0.89 -24.63 13.29 55.43 0.74 -23.90 16 26 Si 0.91 20.91 29.54 -169.99 -5.02 15.88 16 27 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 30 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.09 1.75 6.50 -51.93 -0.34 1.41 16 32 H 0.08 1.59 7.70 -51.93 -0.40 1.19 16 33 H 0.08 0.69 7.00 -51.93 -0.36 0.33 16 34 H 0.08 0.75 6.83 -51.93 -0.35 0.40 16 35 H 0.08 0.47 5.82 -51.93 -0.30 0.17 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.14 0.78 6.27 -52.49 -0.33 0.45 16 38 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 39 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 40 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.08 1.07 8.04 -51.93 -0.42 0.65 16 42 H 0.06 0.71 7.89 -51.93 -0.41 0.30 16 43 H 0.19 2.41 4.47 -52.49 -0.23 2.17 16 44 H 0.06 1.39 7.62 -51.93 -0.40 1.00 16 45 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 46 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 378.60 15.07 5.71 5.71 Total: -1.00 -32.99 378.60 -8.97 -41.96 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -6.05 Total: 1.58 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -3.93 Total: -3.03 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: 0.25 Total: -51.12 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.99 -8.97 -41.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890398329.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.209 kcal (2) G-P(sol) polarization free energy of solvation -32.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds